Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04795 and HMPREF1078_RS04800 are separated by 9 nucleotides HMPREF1078_RS04800 and HMPREF1078_RS04805 are separated by 72 nucleotides HMPREF1078_RS04805 and HMPREF1078_RS04810 are separated by 4 nucleotides HMPREF1078_RS04810 and HMPREF1078_RS04815 are separated by 199 nucleotides
HMPREF1078_RS04795: HMPREF1078_RS04795 - CDP-alcohol phosphatidyltransferase family protein, at 207,338 to 208,042
_RS04795
HMPREF1078_RS04800: HMPREF1078_RS04800 - phosphatidylserine decarboxylase family protein, at 208,052 to 208,714
_RS04800
HMPREF1078_RS04805: HMPREF1078_RS04805 - UvrD-helicase domain-containing protein, at 208,787 to 212,014
_RS04805
HMPREF1078_RS04810: HMPREF1078_RS04810 - translation initiation factor, at 212,019 to 212,363
_RS04810
HMPREF1078_RS04815: HMPREF1078_RS04815 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 212,563 to 213,039
_RS04815
Position (kb) 208
209
210
211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.733 kb on - strand at 208.805 kb on + strand at 208.814 kb on + strand at 208.814 kb on + strand at 208.824 kb on + strand at 208.825 kb on - strand at 208.825 kb on - strand at 208.887 kb on - strand at 208.894 kb on + strand at 208.895 kb on - strand at 208.895 kb on - strand at 208.895 kb on - strand at 208.895 kb on - strand at 208.927 kb on + strand at 208.928 kb on - strand at 209.171 kb on + strand, within HMPREF1078_RS04805 at 209.252 kb on + strand, within HMPREF1078_RS04805 at 209.253 kb on - strand, within HMPREF1078_RS04805 at 209.284 kb on + strand, within HMPREF1078_RS04805 at 209.422 kb on + strand, within HMPREF1078_RS04805 at 209.554 kb on + strand, within HMPREF1078_RS04805 at 209.566 kb on - strand, within HMPREF1078_RS04805 at 209.566 kb on - strand, within HMPREF1078_RS04805 at 209.568 kb on - strand, within HMPREF1078_RS04805 at 209.766 kb on - strand, within HMPREF1078_RS04805 at 209.911 kb on + strand, within HMPREF1078_RS04805 at 210.003 kb on - strand, within HMPREF1078_RS04805 at 210.108 kb on + strand, within HMPREF1078_RS04805 at 210.108 kb on + strand, within HMPREF1078_RS04805 at 210.109 kb on - strand, within HMPREF1078_RS04805 at 210.110 kb on + strand, within HMPREF1078_RS04805 at 210.153 kb on + strand, within HMPREF1078_RS04805 at 210.220 kb on + strand, within HMPREF1078_RS04805 at 210.260 kb on - strand, within HMPREF1078_RS04805 at 210.261 kb on + strand, within HMPREF1078_RS04805 at 210.269 kb on + strand, within HMPREF1078_RS04805 at 210.336 kb on + strand, within HMPREF1078_RS04805 at 210.410 kb on - strand, within HMPREF1078_RS04805 at 210.434 kb on + strand, within HMPREF1078_RS04805 at 210.485 kb on - strand, within HMPREF1078_RS04805 at 210.489 kb on + strand, within HMPREF1078_RS04805 at 210.506 kb on - strand, within HMPREF1078_RS04805 at 210.565 kb on - strand, within HMPREF1078_RS04805 at 210.595 kb on + strand, within HMPREF1078_RS04805 at 210.725 kb on - strand, within HMPREF1078_RS04805 at 210.725 kb on - strand, within HMPREF1078_RS04805 at 210.857 kb on - strand, within HMPREF1078_RS04805 at 210.859 kb on - strand, within HMPREF1078_RS04805 at 210.859 kb on - strand, within HMPREF1078_RS04805 at 210.859 kb on - strand, within HMPREF1078_RS04805 at 210.859 kb on - strand, within HMPREF1078_RS04805 at 211.024 kb on - strand, within HMPREF1078_RS04805 at 211.288 kb on + strand, within HMPREF1078_RS04805 at 211.296 kb on + strand, within HMPREF1078_RS04805 at 211.301 kb on - strand, within HMPREF1078_RS04805 at 211.410 kb on - strand, within HMPREF1078_RS04805 at 211.410 kb on - strand, within HMPREF1078_RS04805 at 211.442 kb on - strand, within HMPREF1078_RS04805 at 211.443 kb on + strand, within HMPREF1078_RS04805 at 211.443 kb on + strand, within HMPREF1078_RS04805 at 211.444 kb on - strand, within HMPREF1078_RS04805 at 211.444 kb on - strand, within HMPREF1078_RS04805 at 211.480 kb on + strand, within HMPREF1078_RS04805 at 211.481 kb on - strand, within HMPREF1078_RS04805 at 211.520 kb on - strand, within HMPREF1078_RS04805 at 211.861 kb on + strand at 211.861 kb on + strand at 211.862 kb on - strand at 212.015 kb on - strand at 212.015 kb on - strand at 212.015 kb on - strand at 212.015 kb on - strand at 212.015 kb on - strand at 212.042 kb on - strand at 212.042 kb on - strand at 212.355 kb on - strand at 212.364 kb on - strand at 212.420 kb on + strand at 212.420 kb on + strand at 212.420 kb on + strand at 212.420 kb on + strand at 212.421 kb on - strand at 212.421 kb on - strand at 212.421 kb on - strand at 212.421 kb on - strand at 212.429 kb on - strand at 212.429 kb on - strand at 212.468 kb on + strand at 212.468 kb on + strand at 212.469 kb on - strand at 212.469 kb on - strand at 212.470 kb on + strand at 212.493 kb on - strand at 212.527 kb on + strand at 212.538 kb on + strand at 212.560 kb on - strand at 212.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 208,733 - -0.9 208,805 + -1.6 208,814 + -2.5 208,814 + -2.2 208,824 + -0.5 208,825 - -2.7 208,825 - -0.5 208,887 - -0.5 208,894 + -3.3 208,895 - +1.1 208,895 - -1.7 208,895 - -1.5 208,895 - -1.5 208,927 + +0.1 208,928 - -0.5 209,171 + HMPREF1078_RS04805 0.12 -1.9 209,252 + HMPREF1078_RS04805 0.14 -0.9 209,253 - HMPREF1078_RS04805 0.14 -2.6 209,284 + HMPREF1078_RS04805 0.15 -1.7 209,422 + HMPREF1078_RS04805 0.20 +1.1 209,554 + HMPREF1078_RS04805 0.24 -0.5 209,566 - HMPREF1078_RS04805 0.24 -0.9 209,566 - HMPREF1078_RS04805 0.24 +0.1 209,568 - HMPREF1078_RS04805 0.24 +0.1 209,766 - HMPREF1078_RS04805 0.30 +1.1 209,911 + HMPREF1078_RS04805 0.35 -1.2 210,003 - HMPREF1078_RS04805 0.38 +0.1 210,108 + HMPREF1078_RS04805 0.41 -1.2 210,108 + HMPREF1078_RS04805 0.41 -0.5 210,109 - HMPREF1078_RS04805 0.41 +1.1 210,110 + HMPREF1078_RS04805 0.41 -0.5 210,153 + HMPREF1078_RS04805 0.42 -1.7 210,220 + HMPREF1078_RS04805 0.44 -3.1 210,260 - HMPREF1078_RS04805 0.46 +0.1 210,261 + HMPREF1078_RS04805 0.46 -0.5 210,269 + HMPREF1078_RS04805 0.46 -0.9 210,336 + HMPREF1078_RS04805 0.48 +1.1 210,410 - HMPREF1078_RS04805 0.50 -1.7 210,434 + HMPREF1078_RS04805 0.51 -1.5 210,485 - HMPREF1078_RS04805 0.53 -0.9 210,489 + HMPREF1078_RS04805 0.53 -0.5 210,506 - HMPREF1078_RS04805 0.53 -0.9 210,565 - HMPREF1078_RS04805 0.55 +1.1 210,595 + HMPREF1078_RS04805 0.56 -0.9 210,725 - HMPREF1078_RS04805 0.60 +0.1 210,725 - HMPREF1078_RS04805 0.60 +1.1 210,857 - HMPREF1078_RS04805 0.64 -0.5 210,859 - HMPREF1078_RS04805 0.64 -0.9 210,859 - HMPREF1078_RS04805 0.64 +1.1 210,859 - HMPREF1078_RS04805 0.64 +1.1 210,859 - HMPREF1078_RS04805 0.64 -0.5 211,024 - HMPREF1078_RS04805 0.69 -0.5 211,288 + HMPREF1078_RS04805 0.77 -2.2 211,296 + HMPREF1078_RS04805 0.78 -1.2 211,301 - HMPREF1078_RS04805 0.78 -0.9 211,410 - HMPREF1078_RS04805 0.81 -1.9 211,410 - HMPREF1078_RS04805 0.81 +0.1 211,442 - HMPREF1078_RS04805 0.82 +0.1 211,443 + HMPREF1078_RS04805 0.82 +0.1 211,443 + HMPREF1078_RS04805 0.82 +0.1 211,444 - HMPREF1078_RS04805 0.82 -0.5 211,444 - HMPREF1078_RS04805 0.82 +1.1 211,480 + HMPREF1078_RS04805 0.83 -2.0 211,481 - HMPREF1078_RS04805 0.83 -0.5 211,520 - HMPREF1078_RS04805 0.85 -0.5 211,861 + +1.1 211,861 + -1.2 211,862 - -1.2 212,015 - -2.2 212,015 - -0.7 212,015 - -0.5 212,015 - -0.9 212,015 - -1.0 212,042 - +1.1 212,042 - +1.3 212,355 - -0.9 212,364 - -0.4 212,420 + +1.4 212,420 + -1.0 212,420 + +2.1 212,420 + -1.1 212,421 - +0.9 212,421 - -0.1 212,421 - -1.3 212,421 - +1.4 212,429 - +0.7 212,429 - +2.1 212,468 + -0.9 212,468 + -0.0 212,469 - -2.3 212,469 - -0.7 212,470 + +0.1 212,493 - +0.6 212,527 + +0.8 212,538 + -0.8 212,560 - +0.1 212,565 - +0.8
Or see this region's nucleotide sequence