Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04705 and HMPREF1078_RS04710 overlap by 4 nucleotides HMPREF1078_RS04710 and HMPREF1078_RS04715 overlap by 4 nucleotides
HMPREF1078_RS04705: HMPREF1078_RS04705 - site-specific tyrosine recombinase XerD, at 185,075 to 185,980
_RS04705
HMPREF1078_RS04710: HMPREF1078_RS04710 - DUF4954 family protein, at 185,977 to 187,971
_RS04710
HMPREF1078_RS04715: HMPREF1078_RS04715 - GTPase HflX, at 187,968 to 189,179
_RS04715
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 184.990 kb on + strand at 184.991 kb on - strand at 185.051 kb on - strand at 185.057 kb on + strand at 185.097 kb on + strand at 185.106 kb on - strand at 185.106 kb on - strand at 185.114 kb on + strand at 185.149 kb on + strand at 185.228 kb on + strand, within HMPREF1078_RS04705 at 185.228 kb on + strand, within HMPREF1078_RS04705 at 185.229 kb on - strand, within HMPREF1078_RS04705 at 185.229 kb on - strand, within HMPREF1078_RS04705 at 185.345 kb on + strand, within HMPREF1078_RS04705 at 185.345 kb on + strand, within HMPREF1078_RS04705 at 185.347 kb on + strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.348 kb on - strand, within HMPREF1078_RS04705 at 185.349 kb on + strand, within HMPREF1078_RS04705 at 185.350 kb on - strand, within HMPREF1078_RS04705 at 185.373 kb on + strand, within HMPREF1078_RS04705 at 185.429 kb on - strand, within HMPREF1078_RS04705 at 185.501 kb on + strand, within HMPREF1078_RS04705 at 185.501 kb on + strand, within HMPREF1078_RS04705 at 185.556 kb on - strand, within HMPREF1078_RS04705 at 185.654 kb on + strand, within HMPREF1078_RS04705 at 185.749 kb on + strand, within HMPREF1078_RS04705 at 185.749 kb on + strand, within HMPREF1078_RS04705 at 185.804 kb on - strand, within HMPREF1078_RS04705 at 185.861 kb on - strand, within HMPREF1078_RS04705 at 185.906 kb on + strand at 185.944 kb on - strand at 185.944 kb on - strand at 185.962 kb on + strand at 185.979 kb on - strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.036 kb on + strand at 186.151 kb on - strand at 186.177 kb on + strand, within HMPREF1078_RS04710 at 186.178 kb on - strand, within HMPREF1078_RS04710 at 186.179 kb on + strand, within HMPREF1078_RS04710 at 186.180 kb on - strand, within HMPREF1078_RS04710 at 186.272 kb on + strand, within HMPREF1078_RS04710 at 186.273 kb on - strand, within HMPREF1078_RS04710 at 186.273 kb on - strand, within HMPREF1078_RS04710 at 186.276 kb on - strand, within HMPREF1078_RS04710 at 186.276 kb on - strand, within HMPREF1078_RS04710 at 186.289 kb on - strand, within HMPREF1078_RS04710 at 186.294 kb on - strand, within HMPREF1078_RS04710 at 186.294 kb on - strand, within HMPREF1078_RS04710 at 186.317 kb on + strand, within HMPREF1078_RS04710 at 186.572 kb on + strand, within HMPREF1078_RS04710 at 186.626 kb on + strand, within HMPREF1078_RS04710 at 186.627 kb on - strand, within HMPREF1078_RS04710 at 186.698 kb on + strand, within HMPREF1078_RS04710 at 186.706 kb on - strand, within HMPREF1078_RS04710 at 186.707 kb on + strand, within HMPREF1078_RS04710 at 186.798 kb on + strand, within HMPREF1078_RS04710 at 186.817 kb on + strand, within HMPREF1078_RS04710 at 186.833 kb on + strand, within HMPREF1078_RS04710 at 186.833 kb on + strand, within HMPREF1078_RS04710 at 186.834 kb on - strand, within HMPREF1078_RS04710 at 186.834 kb on - strand, within HMPREF1078_RS04710 at 186.834 kb on - strand, within HMPREF1078_RS04710 at 186.862 kb on - strand, within HMPREF1078_RS04710 at 186.888 kb on + strand, within HMPREF1078_RS04710 at 186.950 kb on + strand, within HMPREF1078_RS04710 at 186.950 kb on + strand, within HMPREF1078_RS04710 at 186.951 kb on - strand, within HMPREF1078_RS04710 at 186.987 kb on + strand, within HMPREF1078_RS04710 at 187.014 kb on - strand, within HMPREF1078_RS04710 at 187.014 kb on - strand, within HMPREF1078_RS04710 at 187.014 kb on - strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.017 kb on + strand, within HMPREF1078_RS04710 at 187.018 kb on - strand, within HMPREF1078_RS04710 at 187.018 kb on - strand, within HMPREF1078_RS04710 at 187.024 kb on - strand, within HMPREF1078_RS04710 at 187.061 kb on + strand, within HMPREF1078_RS04710 at 187.090 kb on - strand, within HMPREF1078_RS04710 at 187.123 kb on - strand, within HMPREF1078_RS04710 at 187.228 kb on - strand, within HMPREF1078_RS04710 at 187.285 kb on - strand, within HMPREF1078_RS04710 at 187.301 kb on + strand, within HMPREF1078_RS04710 at 187.403 kb on - strand, within HMPREF1078_RS04710 at 187.404 kb on + strand, within HMPREF1078_RS04710 at 187.440 kb on - strand, within HMPREF1078_RS04710 at 187.514 kb on + strand, within HMPREF1078_RS04710 at 187.515 kb on - strand, within HMPREF1078_RS04710 at 187.516 kb on + strand, within HMPREF1078_RS04710 at 187.517 kb on - strand, within HMPREF1078_RS04710 at 187.530 kb on - strand, within HMPREF1078_RS04710 at 187.556 kb on + strand, within HMPREF1078_RS04710 at 187.565 kb on - strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.637 kb on + strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.638 kb on - strand, within HMPREF1078_RS04710 at 187.657 kb on + strand, within HMPREF1078_RS04710 at 187.675 kb on + strand, within HMPREF1078_RS04710 at 187.676 kb on - strand, within HMPREF1078_RS04710 at 187.695 kb on - strand, within HMPREF1078_RS04710 at 187.695 kb on - strand, within HMPREF1078_RS04710 at 187.720 kb on - strand, within HMPREF1078_RS04710 at 187.740 kb on + strand, within HMPREF1078_RS04710 at 187.845 kb on + strand at 187.955 kb on - strand at 187.955 kb on - strand at 187.982 kb on - strand at 188.021 kb on + strand at 188.022 kb on - strand at 188.100 kb on - strand, within HMPREF1078_RS04715 at 188.231 kb on + strand, within HMPREF1078_RS04715 at 188.366 kb on - strand, within HMPREF1078_RS04715 at 188.514 kb on - strand, within HMPREF1078_RS04715 at 188.516 kb on + strand, within HMPREF1078_RS04715 at 188.553 kb on - strand, within HMPREF1078_RS04715 at 188.649 kb on + strand, within HMPREF1078_RS04715 at 188.666 kb on + strand, within HMPREF1078_RS04715 at 188.666 kb on + strand, within HMPREF1078_RS04715 at 188.667 kb on - strand, within HMPREF1078_RS04715 at 188.667 kb on - strand, within HMPREF1078_RS04715 at 188.673 kb on - strand, within HMPREF1078_RS04715 at 188.770 kb on + strand, within HMPREF1078_RS04715 at 188.771 kb on - strand, within HMPREF1078_RS04715 at 188.771 kb on - strand, within HMPREF1078_RS04715 at 188.775 kb on - strand, within HMPREF1078_RS04715 at 188.853 kb on - strand, within HMPREF1078_RS04715 at 188.925 kb on + strand, within HMPREF1078_RS04715 at 188.956 kb on + strand, within HMPREF1078_RS04715 at 188.957 kb on - strand, within HMPREF1078_RS04715
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 184,990 + +0.1 184,991 - -1.7 185,051 - +0.1 185,057 + +0.3 185,097 + -1.7 185,106 - -1.2 185,106 - -2.8 185,114 + +0.1 185,149 + -0.5 185,228 + HMPREF1078_RS04705 0.17 -1.7 185,228 + HMPREF1078_RS04705 0.17 -2.5 185,229 - HMPREF1078_RS04705 0.17 -1.7 185,229 - HMPREF1078_RS04705 0.17 -3.2 185,345 + HMPREF1078_RS04705 0.30 -1.5 185,345 + HMPREF1078_RS04705 0.30 -0.1 185,347 + HMPREF1078_RS04705 0.30 -1.5 185,348 - HMPREF1078_RS04705 0.30 +1.1 185,348 - HMPREF1078_RS04705 0.30 -1.7 185,348 - HMPREF1078_RS04705 0.30 -1.7 185,348 - HMPREF1078_RS04705 0.30 +1.1 185,349 + HMPREF1078_RS04705 0.30 -1.7 185,350 - HMPREF1078_RS04705 0.30 -1.7 185,373 + HMPREF1078_RS04705 0.33 -1.2 185,429 - HMPREF1078_RS04705 0.39 +1.1 185,501 + HMPREF1078_RS04705 0.47 +1.1 185,501 + HMPREF1078_RS04705 0.47 -1.1 185,556 - HMPREF1078_RS04705 0.53 -2.9 185,654 + HMPREF1078_RS04705 0.64 +0.1 185,749 + HMPREF1078_RS04705 0.74 -1.7 185,749 + HMPREF1078_RS04705 0.74 -1.9 185,804 - HMPREF1078_RS04705 0.80 +0.1 185,861 - HMPREF1078_RS04705 0.87 +1.1 185,906 + -0.9 185,944 - -0.5 185,944 - -2.3 185,962 + +0.3 185,979 - +0.2 186,036 + -3.0 186,036 + -3.7 186,036 + -1.3 186,036 + -4.2 186,036 + -0.9 186,151 - -1.8 186,177 + HMPREF1078_RS04710 0.10 -1.9 186,178 - HMPREF1078_RS04710 0.10 -2.0 186,179 + HMPREF1078_RS04710 0.10 +0.1 186,180 - HMPREF1078_RS04710 0.10 -2.5 186,272 + HMPREF1078_RS04710 0.15 -2.5 186,273 - HMPREF1078_RS04710 0.15 -1.2 186,273 - HMPREF1078_RS04710 0.15 -3.3 186,276 - HMPREF1078_RS04710 0.15 +0.1 186,276 - HMPREF1078_RS04710 0.15 -3.9 186,289 - HMPREF1078_RS04710 0.16 -0.8 186,294 - HMPREF1078_RS04710 0.16 -1.9 186,294 - HMPREF1078_RS04710 0.16 -0.5 186,317 + HMPREF1078_RS04710 0.17 -1.9 186,572 + HMPREF1078_RS04710 0.30 -2.3 186,626 + HMPREF1078_RS04710 0.33 -4.1 186,627 - HMPREF1078_RS04710 0.33 -1.8 186,698 + HMPREF1078_RS04710 0.36 -4.3 186,706 - HMPREF1078_RS04710 0.37 -2.9 186,707 + HMPREF1078_RS04710 0.37 -2.7 186,798 + HMPREF1078_RS04710 0.41 +0.1 186,817 + HMPREF1078_RS04710 0.42 -5.2 186,833 + HMPREF1078_RS04710 0.43 -3.5 186,833 + HMPREF1078_RS04710 0.43 -2.3 186,834 - HMPREF1078_RS04710 0.43 -1.2 186,834 - HMPREF1078_RS04710 0.43 -4.1 186,834 - HMPREF1078_RS04710 0.43 -2.3 186,862 - HMPREF1078_RS04710 0.44 -1.7 186,888 + HMPREF1078_RS04710 0.46 -2.5 186,950 + HMPREF1078_RS04710 0.49 -2.7 186,950 + HMPREF1078_RS04710 0.49 -3.7 186,951 - HMPREF1078_RS04710 0.49 -2.5 186,987 + HMPREF1078_RS04710 0.51 -3.3 187,014 - HMPREF1078_RS04710 0.52 -3.1 187,014 - HMPREF1078_RS04710 0.52 -2.2 187,014 - HMPREF1078_RS04710 0.52 +0.1 187,017 + HMPREF1078_RS04710 0.52 -3.0 187,017 + HMPREF1078_RS04710 0.52 +0.1 187,017 + HMPREF1078_RS04710 0.52 -3.2 187,017 + HMPREF1078_RS04710 0.52 -4.0 187,017 + HMPREF1078_RS04710 0.52 -3.3 187,017 + HMPREF1078_RS04710 0.52 -1.2 187,018 - HMPREF1078_RS04710 0.52 -3.2 187,018 - HMPREF1078_RS04710 0.52 -2.1 187,024 - HMPREF1078_RS04710 0.52 -2.2 187,061 + HMPREF1078_RS04710 0.54 -3.6 187,090 - HMPREF1078_RS04710 0.56 -1.5 187,123 - HMPREF1078_RS04710 0.57 -0.4 187,228 - HMPREF1078_RS04710 0.63 -4.5 187,285 - HMPREF1078_RS04710 0.66 -0.5 187,301 + HMPREF1078_RS04710 0.66 +1.1 187,403 - HMPREF1078_RS04710 0.71 -4.0 187,404 + HMPREF1078_RS04710 0.72 -2.2 187,440 - HMPREF1078_RS04710 0.73 +0.1 187,514 + HMPREF1078_RS04710 0.77 -2.6 187,515 - HMPREF1078_RS04710 0.77 -3.3 187,516 + HMPREF1078_RS04710 0.77 -2.3 187,517 - HMPREF1078_RS04710 0.77 -1.5 187,530 - HMPREF1078_RS04710 0.78 -1.1 187,556 + HMPREF1078_RS04710 0.79 -1.1 187,565 - HMPREF1078_RS04710 0.80 -2.3 187,637 + HMPREF1078_RS04710 0.83 -1.2 187,637 + HMPREF1078_RS04710 0.83 -1.2 187,637 + HMPREF1078_RS04710 0.83 -1.9 187,637 + HMPREF1078_RS04710 0.83 -3.3 187,638 - HMPREF1078_RS04710 0.83 -1.3 187,638 - HMPREF1078_RS04710 0.83 -3.1 187,638 - HMPREF1078_RS04710 0.83 -2.7 187,638 - HMPREF1078_RS04710 0.83 -1.2 187,657 + HMPREF1078_RS04710 0.84 -2.5 187,675 + HMPREF1078_RS04710 0.85 -2.5 187,676 - HMPREF1078_RS04710 0.85 -0.5 187,695 - HMPREF1078_RS04710 0.86 -2.1 187,695 - HMPREF1078_RS04710 0.86 -3.3 187,720 - HMPREF1078_RS04710 0.87 -3.5 187,740 + HMPREF1078_RS04710 0.88 -1.2 187,845 + -3.8 187,955 - -2.8 187,955 - -0.3 187,982 - -0.2 188,021 + -1.4 188,022 - -0.9 188,100 - HMPREF1078_RS04715 0.11 +0.1 188,231 + HMPREF1078_RS04715 0.22 -1.5 188,366 - HMPREF1078_RS04715 0.33 -0.9 188,514 - HMPREF1078_RS04715 0.45 -2.2 188,516 + HMPREF1078_RS04715 0.45 -2.1 188,553 - HMPREF1078_RS04715 0.48 -0.3 188,649 + HMPREF1078_RS04715 0.56 -1.7 188,666 + HMPREF1078_RS04715 0.58 +0.1 188,666 + HMPREF1078_RS04715 0.58 -2.6 188,667 - HMPREF1078_RS04715 0.58 -1.6 188,667 - HMPREF1078_RS04715 0.58 -0.5 188,673 - HMPREF1078_RS04715 0.58 -0.4 188,770 + HMPREF1078_RS04715 0.66 -1.5 188,771 - HMPREF1078_RS04715 0.66 +0.8 188,771 - HMPREF1078_RS04715 0.66 -1.4 188,775 - HMPREF1078_RS04715 0.67 -1.9 188,853 - HMPREF1078_RS04715 0.73 -0.9 188,925 + HMPREF1078_RS04715 0.79 +0.1 188,956 + HMPREF1078_RS04715 0.82 -0.4 188,957 - HMPREF1078_RS04715 0.82 -3.3
Or see this region's nucleotide sequence