Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04650 and HMPREF1078_RS04655 are separated by 3 nucleotides HMPREF1078_RS04655 and HMPREF1078_RS04660 are separated by 3 nucleotides HMPREF1078_RS04660 and HMPREF1078_RS04665 are separated by 26 nucleotides
HMPREF1078_RS04650: HMPREF1078_RS04650 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 169,775 to 171,247
_RS04650
HMPREF1078_RS04655: HMPREF1078_RS04655 - penicillin-binding protein, at 171,251 to 173,449
_RS04655
HMPREF1078_RS04660: HMPREF1078_RS04660 - FtsL-like putative cell division protein, at 173,453 to 173,797
_RS04660
HMPREF1078_RS04665: HMPREF1078_RS04665 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 173,824 to 174,750
_RS04665
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 171.253 kb on - strand at 171.538 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 173.461 kb on - strand at 173.499 kb on - strand, within HMPREF1078_RS04660 at 173.514 kb on - strand, within HMPREF1078_RS04660 at 173.833 kb on - strand at 173.833 kb on - strand at 173.836 kb on - strand at 173.855 kb on - strand at 174.143 kb on - strand, within HMPREF1078_RS04665 at 174.191 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.324 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.376 kb on - strand, within HMPREF1078_RS04665
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 171,253 - +0.5 171,538 - HMPREF1078_RS04655 0.13 -2.3 171,626 - HMPREF1078_RS04655 0.17 -0.5 171,626 - HMPREF1078_RS04655 0.17 -1.5 171,626 - HMPREF1078_RS04655 0.17 -3.5 171,626 - HMPREF1078_RS04655 0.17 -0.9 171,626 - HMPREF1078_RS04655 0.17 -1.7 173,461 - -1.2 173,499 - HMPREF1078_RS04660 0.13 -2.9 173,514 - HMPREF1078_RS04660 0.18 +1.1 173,833 - +2.1 173,833 - +3.0 173,836 - -2.5 173,855 - +0.7 174,143 - HMPREF1078_RS04665 0.34 +0.1 174,191 - HMPREF1078_RS04665 0.40 -1.2 174,322 - HMPREF1078_RS04665 0.54 -0.5 174,322 - HMPREF1078_RS04665 0.54 -1.5 174,322 - HMPREF1078_RS04665 0.54 -1.2 174,322 - HMPREF1078_RS04665 0.54 -0.9 174,324 - HMPREF1078_RS04665 0.54 +0.1 174,328 - HMPREF1078_RS04665 0.54 -0.9 174,328 - HMPREF1078_RS04665 0.54 +1.1 174,328 - HMPREF1078_RS04665 0.54 +0.1 174,328 - HMPREF1078_RS04665 0.54 +1.1 174,331 - HMPREF1078_RS04665 0.55 -1.7 174,331 - HMPREF1078_RS04665 0.55 -0.9 174,376 - HMPREF1078_RS04665 0.60 +0.5
Or see this region's nucleotide sequence