Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03550 and HMPREF1078_RS18390 are separated by 221 nucleotides HMPREF1078_RS18390 and HMPREF1078_RS03560 are separated by 436 nucleotides HMPREF1078_RS03560 and HMPREF1078_RS03565 are separated by 135 nucleotides
HMPREF1078_RS03550: HMPREF1078_RS03550 - MalY/PatB family protein, at 832,515 to 833,681
_RS03550
HMPREF1078_RS18390: HMPREF1078_RS18390 - DUF4248 domain-containing protein, at 833,903 to 834,126
_RS18390
HMPREF1078_RS03560: HMPREF1078_RS03560 - 3'-5' exonuclease, at 834,563 to 836,875
_RS03560
HMPREF1078_RS03565: HMPREF1078_RS03565 - glycoside hydrolase family 127 protein, at 837,011 to 838,888
_RS03565
Position (kb) 834
835
836
837 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 833.575 kb on - strand at 833.612 kb on - strand at 833.654 kb on - strand at 833.752 kb on - strand at 833.811 kb on - strand at 833.811 kb on - strand at 833.811 kb on - strand at 833.831 kb on + strand at 833.846 kb on - strand at 833.872 kb on - strand at 833.887 kb on + strand at 833.888 kb on - strand at 834.030 kb on - strand, within HMPREF1078_RS18390 at 834.264 kb on + strand at 834.264 kb on + strand at 834.264 kb on + strand at 834.281 kb on - strand at 834.281 kb on - strand at 834.283 kb on - strand at 834.283 kb on - strand at 834.283 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.293 kb on - strand at 834.293 kb on - strand at 834.293 kb on - strand at 834.293 kb on - strand at 834.293 kb on - strand at 834.293 kb on - strand at 834.310 kb on - strand at 834.347 kb on + strand at 834.382 kb on + strand at 834.459 kb on + strand at 834.460 kb on - strand at 834.506 kb on + strand at 834.507 kb on - strand at 834.522 kb on + strand at 834.525 kb on + strand at 834.525 kb on + strand at 834.525 kb on + strand at 834.526 kb on - strand at 834.531 kb on - strand at 834.543 kb on + strand at 834.544 kb on - strand at 834.672 kb on - strand at 834.672 kb on - strand at 834.831 kb on + strand, within HMPREF1078_RS03560 at 834.831 kb on + strand, within HMPREF1078_RS03560 at 834.831 kb on + strand, within HMPREF1078_RS03560 at 834.831 kb on + strand, within HMPREF1078_RS03560 at 834.832 kb on - strand, within HMPREF1078_RS03560 at 834.901 kb on + strand, within HMPREF1078_RS03560 at 834.901 kb on + strand, within HMPREF1078_RS03560 at 834.922 kb on + strand, within HMPREF1078_RS03560 at 834.923 kb on - strand, within HMPREF1078_RS03560 at 834.924 kb on + strand, within HMPREF1078_RS03560 at 834.924 kb on + strand, within HMPREF1078_RS03560 at 834.925 kb on - strand, within HMPREF1078_RS03560 at 834.928 kb on + strand, within HMPREF1078_RS03560 at 834.930 kb on + strand, within HMPREF1078_RS03560 at 834.977 kb on - strand, within HMPREF1078_RS03560 at 835.017 kb on - strand, within HMPREF1078_RS03560 at 835.312 kb on + strand, within HMPREF1078_RS03560 at 835.313 kb on - strand, within HMPREF1078_RS03560 at 835.439 kb on - strand, within HMPREF1078_RS03560 at 835.562 kb on - strand, within HMPREF1078_RS03560 at 835.629 kb on - strand, within HMPREF1078_RS03560 at 835.731 kb on + strand, within HMPREF1078_RS03560 at 835.732 kb on - strand, within HMPREF1078_RS03560 at 835.733 kb on + strand, within HMPREF1078_RS03560 at 835.733 kb on + strand, within HMPREF1078_RS03560 at 835.734 kb on - strand, within HMPREF1078_RS03560 at 835.734 kb on - strand, within HMPREF1078_RS03560 at 835.738 kb on + strand, within HMPREF1078_RS03560 at 835.739 kb on - strand, within HMPREF1078_RS03560 at 835.822 kb on - strand, within HMPREF1078_RS03560 at 835.850 kb on - strand, within HMPREF1078_RS03560 at 835.882 kb on - strand, within HMPREF1078_RS03560 at 835.966 kb on + strand, within HMPREF1078_RS03560 at 835.966 kb on + strand, within HMPREF1078_RS03560 at 835.967 kb on - strand, within HMPREF1078_RS03560 at 835.967 kb on - strand, within HMPREF1078_RS03560 at 835.967 kb on - strand, within HMPREF1078_RS03560 at 835.967 kb on - strand, within HMPREF1078_RS03560 at 835.970 kb on + strand, within HMPREF1078_RS03560 at 835.971 kb on - strand, within HMPREF1078_RS03560 at 836.072 kb on - strand, within HMPREF1078_RS03560 at 836.101 kb on - strand, within HMPREF1078_RS03560 at 836.145 kb on - strand, within HMPREF1078_RS03560 at 836.243 kb on + strand, within HMPREF1078_RS03560 at 836.266 kb on + strand, within HMPREF1078_RS03560 at 836.338 kb on + strand, within HMPREF1078_RS03560 at 836.338 kb on + strand, within HMPREF1078_RS03560 at 836.339 kb on - strand, within HMPREF1078_RS03560 at 836.340 kb on + strand, within HMPREF1078_RS03560 at 836.341 kb on - strand, within HMPREF1078_RS03560 at 836.342 kb on + strand, within HMPREF1078_RS03560 at 836.343 kb on - strand, within HMPREF1078_RS03560 at 836.343 kb on - strand, within HMPREF1078_RS03560 at 836.343 kb on - strand, within HMPREF1078_RS03560 at 836.372 kb on + strand, within HMPREF1078_RS03560 at 836.373 kb on - strand, within HMPREF1078_RS03560 at 836.375 kb on - strand, within HMPREF1078_RS03560 at 836.375 kb on - strand, within HMPREF1078_RS03560 at 836.399 kb on - strand, within HMPREF1078_RS03560 at 836.415 kb on + strand, within HMPREF1078_RS03560 at 836.419 kb on + strand, within HMPREF1078_RS03560 at 836.420 kb on - strand, within HMPREF1078_RS03560 at 836.422 kb on + strand, within HMPREF1078_RS03560 at 836.422 kb on + strand, within HMPREF1078_RS03560 at 836.505 kb on - strand, within HMPREF1078_RS03560 at 836.517 kb on - strand, within HMPREF1078_RS03560 at 836.541 kb on + strand, within HMPREF1078_RS03560 at 836.593 kb on + strand, within HMPREF1078_RS03560 at 836.637 kb on - strand, within HMPREF1078_RS03560 at 836.693 kb on - strand at 836.741 kb on + strand at 836.753 kb on + strand at 836.753 kb on + strand at 836.753 kb on + strand at 836.754 kb on - strand at 836.822 kb on - strand at 836.865 kb on + strand at 836.877 kb on + strand at 836.877 kb on + strand at 836.877 kb on + strand at 836.890 kb on + strand at 836.897 kb on - strand at 836.951 kb on + strand at 836.951 kb on + strand at 836.951 kb on + strand at 836.951 kb on + strand at 836.952 kb on - strand at 836.969 kb on + strand at 837.215 kb on + strand, within HMPREF1078_RS03565 at 837.235 kb on - strand, within HMPREF1078_RS03565 at 837.420 kb on + strand, within HMPREF1078_RS03565 at 837.421 kb on - strand, within HMPREF1078_RS03565 at 837.634 kb on - strand, within HMPREF1078_RS03565 at 837.831 kb on + strand, within HMPREF1078_RS03565 at 837.831 kb on + strand, within HMPREF1078_RS03565 at 837.831 kb on + strand, within HMPREF1078_RS03565 at 837.831 kb on + strand, within HMPREF1078_RS03565 at 837.831 kb on + strand, within HMPREF1078_RS03565 at 837.832 kb on - strand, within HMPREF1078_RS03565 at 837.832 kb on - strand, within HMPREF1078_RS03565 at 837.832 kb on - strand, within HMPREF1078_RS03565 at 837.847 kb on + strand, within HMPREF1078_RS03565 at 837.850 kb on - strand, within HMPREF1078_RS03565 at 837.859 kb on - strand, within HMPREF1078_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 833,575 - +1.4 833,612 - +0.9 833,654 - +0.2 833,752 - +0.9 833,811 - -0.9 833,811 - +1.6 833,811 - +0.5 833,831 + -0.9 833,846 - -1.1 833,872 - +0.0 833,887 + +1.2 833,888 - -0.9 834,030 - HMPREF1078_RS18390 0.57 +0.2 834,264 + -1.4 834,264 + +1.2 834,264 + +1.9 834,281 - -2.2 834,281 - +1.2 834,283 - -1.1 834,283 - +1.2 834,283 - +0.5 834,291 - +1.2 834,291 - +0.8 834,293 - +0.8 834,293 - -1.8 834,293 - -2.4 834,293 - +1.6 834,293 - +1.6 834,293 - -0.2 834,310 - +0.6 834,347 + -2.9 834,382 + +0.2 834,459 + -1.1 834,460 - +1.2 834,506 + +0.2 834,507 - +0.2 834,522 + -0.3 834,525 + -1.8 834,525 + -1.8 834,525 + -2.8 834,526 - +0.0 834,531 - -4.4 834,543 + -0.9 834,544 - -1.1 834,672 - +1.6 834,672 - +1.2 834,831 + HMPREF1078_RS03560 0.12 -0.6 834,831 + HMPREF1078_RS03560 0.12 -0.8 834,831 + HMPREF1078_RS03560 0.12 +1.2 834,831 + HMPREF1078_RS03560 0.12 -0.0 834,832 - HMPREF1078_RS03560 0.12 +0.7 834,901 + HMPREF1078_RS03560 0.15 -1.9 834,901 + HMPREF1078_RS03560 0.15 -0.4 834,922 + HMPREF1078_RS03560 0.16 -1.6 834,923 - HMPREF1078_RS03560 0.16 -1.4 834,924 + HMPREF1078_RS03560 0.16 +1.8 834,924 + HMPREF1078_RS03560 0.16 -2.2 834,925 - HMPREF1078_RS03560 0.16 -0.8 834,928 + HMPREF1078_RS03560 0.16 +0.0 834,930 + HMPREF1078_RS03560 0.16 -0.4 834,977 - HMPREF1078_RS03560 0.18 -2.4 835,017 - HMPREF1078_RS03560 0.20 -1.4 835,312 + HMPREF1078_RS03560 0.32 -0.6 835,313 - HMPREF1078_RS03560 0.32 -1.8 835,439 - HMPREF1078_RS03560 0.38 +0.2 835,562 - HMPREF1078_RS03560 0.43 -2.4 835,629 - HMPREF1078_RS03560 0.46 -1.1 835,731 + HMPREF1078_RS03560 0.50 -2.4 835,732 - HMPREF1078_RS03560 0.51 -1.1 835,733 + HMPREF1078_RS03560 0.51 -1.1 835,733 + HMPREF1078_RS03560 0.51 -1.4 835,734 - HMPREF1078_RS03560 0.51 -1.8 835,734 - HMPREF1078_RS03560 0.51 -1.8 835,738 + HMPREF1078_RS03560 0.51 +1.2 835,739 - HMPREF1078_RS03560 0.51 -0.6 835,822 - HMPREF1078_RS03560 0.54 -3.0 835,850 - HMPREF1078_RS03560 0.56 -2.5 835,882 - HMPREF1078_RS03560 0.57 +0.2 835,966 + HMPREF1078_RS03560 0.61 -2.1 835,966 + HMPREF1078_RS03560 0.61 +0.2 835,967 - HMPREF1078_RS03560 0.61 -2.5 835,967 - HMPREF1078_RS03560 0.61 -1.2 835,967 - HMPREF1078_RS03560 0.61 -1.4 835,967 - HMPREF1078_RS03560 0.61 -2.4 835,970 + HMPREF1078_RS03560 0.61 -0.8 835,971 - HMPREF1078_RS03560 0.61 +0.2 836,072 - HMPREF1078_RS03560 0.65 -2.5 836,101 - HMPREF1078_RS03560 0.66 +0.2 836,145 - HMPREF1078_RS03560 0.68 -0.8 836,243 + HMPREF1078_RS03560 0.73 +0.2 836,266 + HMPREF1078_RS03560 0.74 +0.2 836,338 + HMPREF1078_RS03560 0.77 -0.4 836,338 + HMPREF1078_RS03560 0.77 +0.2 836,339 - HMPREF1078_RS03560 0.77 -0.8 836,340 + HMPREF1078_RS03560 0.77 -1.1 836,341 - HMPREF1078_RS03560 0.77 -1.8 836,342 + HMPREF1078_RS03560 0.77 -2.9 836,343 - HMPREF1078_RS03560 0.77 -1.6 836,343 - HMPREF1078_RS03560 0.77 -2.7 836,343 - HMPREF1078_RS03560 0.77 +1.2 836,372 + HMPREF1078_RS03560 0.78 -0.4 836,373 - HMPREF1078_RS03560 0.78 +1.2 836,375 - HMPREF1078_RS03560 0.78 -2.2 836,375 - HMPREF1078_RS03560 0.78 -1.4 836,399 - HMPREF1078_RS03560 0.79 -0.6 836,415 + HMPREF1078_RS03560 0.80 -1.4 836,419 + HMPREF1078_RS03560 0.80 -0.4 836,420 - HMPREF1078_RS03560 0.80 -1.6 836,422 + HMPREF1078_RS03560 0.80 +0.0 836,422 + HMPREF1078_RS03560 0.80 +1.2 836,505 - HMPREF1078_RS03560 0.84 -1.8 836,517 - HMPREF1078_RS03560 0.84 +0.6 836,541 + HMPREF1078_RS03560 0.86 -1.9 836,593 + HMPREF1078_RS03560 0.88 -1.1 836,637 - HMPREF1078_RS03560 0.90 -2.7 836,693 - -1.1 836,741 + +1.8 836,753 + +0.2 836,753 + -0.6 836,753 + -1.9 836,754 - -1.1 836,822 - -0.4 836,865 + +0.2 836,877 + -1.4 836,877 + +2.8 836,877 + +1.2 836,890 + -2.8 836,897 - -2.1 836,951 + +0.1 836,951 + +0.2 836,951 + +1.4 836,951 + +1.2 836,952 - +1.2 836,969 + -1.0 837,215 + HMPREF1078_RS03565 0.11 -1.4 837,235 - HMPREF1078_RS03565 0.12 -1.4 837,420 + HMPREF1078_RS03565 0.22 +1.6 837,421 - HMPREF1078_RS03565 0.22 +0.2 837,634 - HMPREF1078_RS03565 0.33 -0.4 837,831 + HMPREF1078_RS03565 0.44 -2.5 837,831 + HMPREF1078_RS03565 0.44 -0.8 837,831 + HMPREF1078_RS03565 0.44 +2.5 837,831 + HMPREF1078_RS03565 0.44 -0.1 837,831 + HMPREF1078_RS03565 0.44 -2.7 837,832 - HMPREF1078_RS03565 0.44 +2.2 837,832 - HMPREF1078_RS03565 0.44 -1.1 837,832 - HMPREF1078_RS03565 0.44 +0.4 837,847 + HMPREF1078_RS03565 0.45 -1.7 837,850 - HMPREF1078_RS03565 0.45 -0.4 837,859 - HMPREF1078_RS03565 0.45 -1.5
Or see this region's nucleotide sequence