Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS03495

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS03490 and HMPREF1078_RS03495 are separated by 170 nucleotidesHMPREF1078_RS03495 and HMPREF1078_RS03500 are separated by 112 nucleotides HMPREF1078_RS03490: HMPREF1078_RS03490 - response regulator transcription factor, at 824,064 to 824,963 _RS03490 HMPREF1078_RS03495: HMPREF1078_RS03495 - hypothetical protein, at 825,134 to 825,637 _RS03495 HMPREF1078_RS03500: HMPREF1078_RS03500 - carboxymuconolactone decarboxylase family protein, at 825,750 to 827,425 _RS03500 Position (kb) 825 826Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 824.156 kb on - strand, within HMPREF1078_RS03490at 824.226 kb on + strand, within HMPREF1078_RS03490at 824.230 kb on + strand, within HMPREF1078_RS03490at 824.230 kb on + strand, within HMPREF1078_RS03490at 824.231 kb on - strand, within HMPREF1078_RS03490at 824.231 kb on - strand, within HMPREF1078_RS03490at 824.231 kb on - strand, within HMPREF1078_RS03490at 824.317 kb on - strand, within HMPREF1078_RS03490at 824.360 kb on - strand, within HMPREF1078_RS03490at 824.428 kb on - strand, within HMPREF1078_RS03490at 824.434 kb on + strand, within HMPREF1078_RS03490at 824.435 kb on - strand, within HMPREF1078_RS03490at 824.445 kb on - strand, within HMPREF1078_RS03490at 824.449 kb on + strand, within HMPREF1078_RS03490at 824.492 kb on + strand, within HMPREF1078_RS03490at 824.493 kb on - strand, within HMPREF1078_RS03490at 824.493 kb on - strand, within HMPREF1078_RS03490at 824.493 kb on - strand, within HMPREF1078_RS03490at 824.493 kb on - strand, within HMPREF1078_RS03490at 824.493 kb on - strand, within HMPREF1078_RS03490at 824.611 kb on + strand, within HMPREF1078_RS03490at 824.612 kb on - strand, within HMPREF1078_RS03490at 824.646 kb on + strand, within HMPREF1078_RS03490at 824.647 kb on - strand, within HMPREF1078_RS03490at 824.702 kb on + strand, within HMPREF1078_RS03490at 824.702 kb on + strand, within HMPREF1078_RS03490at 824.780 kb on - strand, within HMPREF1078_RS03490at 824.780 kb on - strand, within HMPREF1078_RS03490at 824.785 kb on - strand, within HMPREF1078_RS03490at 824.802 kb on + strand, within HMPREF1078_RS03490at 824.802 kb on + strand, within HMPREF1078_RS03490at 824.802 kb on + strand, within HMPREF1078_RS03490at 824.803 kb on - strand, within HMPREF1078_RS03490at 824.804 kb on + strand, within HMPREF1078_RS03490at 824.805 kb on - strand, within HMPREF1078_RS03490at 824.805 kb on - strand, within HMPREF1078_RS03490at 824.815 kb on + strand, within HMPREF1078_RS03490at 824.824 kb on + strand, within HMPREF1078_RS03490at 824.824 kb on + strand, within HMPREF1078_RS03490at 824.903 kb on + strandat 824.907 kb on + strandat 824.907 kb on + strandat 824.907 kb on + strandat 824.907 kb on + strandat 824.907 kb on + strandat 824.907 kb on + strandat 824.907 kb on + strandat 824.908 kb on - strandat 824.908 kb on - strandat 824.908 kb on - strandat 824.924 kb on + strandat 824.925 kb on - strandat 824.950 kb on - strandat 824.952 kb on - strandat 824.971 kb on + strandat 825.034 kb on + strandat 825.035 kb on - strandat 825.039 kb on - strandat 825.060 kb on - strandat 825.060 kb on - strandat 825.084 kb on + strandat 825.121 kb on - strandat 825.121 kb on - strandat 825.139 kb on + strandat 825.151 kb on + strandat 825.151 kb on + strandat 825.152 kb on - strandat 825.152 kb on - strandat 825.152 kb on - strandat 825.152 kb on - strandat 825.382 kb on + strand, within HMPREF1078_RS03495at 825.546 kb on + strand, within HMPREF1078_RS03495at 825.568 kb on + strand, within HMPREF1078_RS03495at 825.593 kb on - strandat 825.603 kb on + strandat 825.604 kb on - strandat 825.616 kb on + strandat 825.617 kb on - strandat 825.617 kb on - strandat 825.619 kb on - strandat 825.637 kb on + strandat 825.640 kb on - strandat 825.658 kb on - strandat 825.734 kb on + strandat 825.739 kb on + strandat 825.750 kb on - strandat 825.781 kb on + strandat 825.838 kb on + strandat 825.842 kb on + strandat 825.851 kb on + strandat 825.976 kb on + strand, within HMPREF1078_RS03500at 825.976 kb on + strand, within HMPREF1078_RS03500at 826.053 kb on - strand, within HMPREF1078_RS03500at 826.267 kb on - strand, within HMPREF1078_RS03500at 826.363 kb on + strand, within HMPREF1078_RS03500at 826.363 kb on + strand, within HMPREF1078_RS03500at 826.364 kb on - strand, within HMPREF1078_RS03500at 826.364 kb on - strand, within HMPREF1078_RS03500at 826.369 kb on + strand, within HMPREF1078_RS03500at 826.370 kb on - strand, within HMPREF1078_RS03500at 826.385 kb on - strand, within HMPREF1078_RS03500at 826.401 kb on - strand, within HMPREF1078_RS03500at 826.401 kb on - strand, within HMPREF1078_RS03500at 826.513 kb on + strand, within HMPREF1078_RS03500at 826.513 kb on + strand, within HMPREF1078_RS03500at 826.568 kb on + strand, within HMPREF1078_RS03500at 826.585 kb on - strand, within HMPREF1078_RS03500at 826.599 kb on + strand, within HMPREF1078_RS03500at 826.600 kb on - strand, within HMPREF1078_RS03500at 826.600 kb on - strand, within HMPREF1078_RS03500at 826.618 kb on - strand, within HMPREF1078_RS03500

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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824,156 - HMPREF1078_RS03490 0.10 -1.8
824,226 + HMPREF1078_RS03490 0.18 -1.9
824,230 + HMPREF1078_RS03490 0.18 -2.5
824,230 + HMPREF1078_RS03490 0.18 -0.3
824,231 - HMPREF1078_RS03490 0.19 -0.4
824,231 - HMPREF1078_RS03490 0.19 -0.6
824,231 - HMPREF1078_RS03490 0.19 +0.2
824,317 - HMPREF1078_RS03490 0.28 +2.0
824,360 - HMPREF1078_RS03490 0.33 -1.1
824,428 - HMPREF1078_RS03490 0.40 -2.0
824,434 + HMPREF1078_RS03490 0.41 +1.4
824,435 - HMPREF1078_RS03490 0.41 -1.1
824,445 - HMPREF1078_RS03490 0.42 +0.6
824,449 + HMPREF1078_RS03490 0.43 -0.4
824,492 + HMPREF1078_RS03490 0.48 +1.5
824,493 - HMPREF1078_RS03490 0.48 +0.2
824,493 - HMPREF1078_RS03490 0.48 -0.5
824,493 - HMPREF1078_RS03490 0.48 +1.2
824,493 - HMPREF1078_RS03490 0.48 +1.2
824,493 - HMPREF1078_RS03490 0.48 +0.3
824,611 + HMPREF1078_RS03490 0.61 +2.0
824,612 - HMPREF1078_RS03490 0.61 -0.1
824,646 + HMPREF1078_RS03490 0.65 +0.5
824,647 - HMPREF1078_RS03490 0.65 -2.8
824,702 + HMPREF1078_RS03490 0.71 +0.2
824,702 + HMPREF1078_RS03490 0.71 -0.9
824,780 - HMPREF1078_RS03490 0.80 -2.8
824,780 - HMPREF1078_RS03490 0.80 -1.6
824,785 - HMPREF1078_RS03490 0.80 -0.4
824,802 + HMPREF1078_RS03490 0.82 +0.2
824,802 + HMPREF1078_RS03490 0.82 -0.8
824,802 + HMPREF1078_RS03490 0.82 -0.8
824,803 - HMPREF1078_RS03490 0.82 -0.1
824,804 + HMPREF1078_RS03490 0.82 -1.4
824,805 - HMPREF1078_RS03490 0.82 -0.7
824,805 - HMPREF1078_RS03490 0.82 -0.8
824,815 + HMPREF1078_RS03490 0.83 -3.6
824,824 + HMPREF1078_RS03490 0.84 -2.4
824,824 + HMPREF1078_RS03490 0.84 -0.8
824,903 + -3.3
824,907 + +0.6
824,907 + -2.0
824,907 + -1.4
824,907 + -0.9
824,907 + +1.2
824,907 + +0.2
824,907 + +0.2
824,908 - -1.2
824,908 - -0.7
824,908 - -1.9
824,924 + +0.9
824,925 - +1.5
824,950 - -1.4
824,952 - +1.2
824,971 + -0.4
825,034 + +0.6
825,035 - -0.4
825,039 - -1.1
825,060 - -0.1
825,060 - -1.1
825,084 + -0.4
825,121 - -0.8
825,121 - +0.3
825,139 + +1.1
825,151 + -1.6
825,151 + +0.1
825,152 - -1.1
825,152 - +0.2
825,152 - -0.5
825,152 - -1.1
825,382 + HMPREF1078_RS03495 0.49 -1.4
825,546 + HMPREF1078_RS03495 0.82 -2.8
825,568 + HMPREF1078_RS03495 0.86 -0.4
825,593 - +2.0
825,603 + -1.1
825,604 - -1.0
825,616 + -3.4
825,617 - +0.2
825,617 - +0.2
825,619 - +1.4
825,637 + +1.5
825,640 - +2.2
825,658 - -0.4
825,734 + +1.6
825,739 + -1.6
825,750 - +2.0
825,781 + -0.1
825,838 + +2.0
825,842 + -0.0
825,851 + -0.9
825,976 + HMPREF1078_RS03500 0.13 +0.8
825,976 + HMPREF1078_RS03500 0.13 -1.6
826,053 - HMPREF1078_RS03500 0.18 -1.1
826,267 - HMPREF1078_RS03500 0.31 -0.4
826,363 + HMPREF1078_RS03500 0.37 -1.6
826,363 + HMPREF1078_RS03500 0.37 -0.1
826,364 - HMPREF1078_RS03500 0.37 -0.8
826,364 - HMPREF1078_RS03500 0.37 -0.8
826,369 + HMPREF1078_RS03500 0.37 +0.0
826,370 - HMPREF1078_RS03500 0.37 -1.6
826,385 - HMPREF1078_RS03500 0.38 -0.8
826,401 - HMPREF1078_RS03500 0.39 -0.8
826,401 - HMPREF1078_RS03500 0.39 -0.7
826,513 + HMPREF1078_RS03500 0.46 -0.9
826,513 + HMPREF1078_RS03500 0.46 -1.4
826,568 + HMPREF1078_RS03500 0.49 -0.8
826,585 - HMPREF1078_RS03500 0.50 -1.1
826,599 + HMPREF1078_RS03500 0.51 +1.2
826,600 - HMPREF1078_RS03500 0.51 +2.8
826,600 - HMPREF1078_RS03500 0.51 +1.2
826,618 - HMPREF1078_RS03500 0.52 -2.4

Or see this region's nucleotide sequence