Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03345 and HMPREF1078_RS03350 are separated by 12 nucleotides HMPREF1078_RS03350 and HMPREF1078_RS03355 are separated by 66 nucleotides HMPREF1078_RS03355 and HMPREF1078_RS03360 overlap by 19 nucleotides HMPREF1078_RS03360 and HMPREF1078_RS03365 are separated by 3 nucleotides HMPREF1078_RS03365 and HMPREF1078_RS03370 are separated by 27 nucleotides
HMPREF1078_RS03345: HMPREF1078_RS03345 - hypothetical protein, at 790,676 to 790,966
_RS03345
HMPREF1078_RS03350: HMPREF1078_RS03350 - DUF4134 domain-containing protein, at 790,979 to 791,335
_RS03350
HMPREF1078_RS03355: HMPREF1078_RS03355 - hypothetical protein, at 791,402 to 791,836
_RS03355
HMPREF1078_RS03360: HMPREF1078_RS03360 - MarR family transcriptional regulator, at 791,818 to 792,435
_RS03360
HMPREF1078_RS03365: HMPREF1078_RS03365 - hypothetical protein, at 792,439 to 792,837
_RS03365
HMPREF1078_RS03370: HMPREF1078_RS03370 - ParA family protein, at 792,865 to 793,689
_RS03370
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 790.856 kb on + strand, within HMPREF1078_RS03345 at 790.856 kb on + strand, within HMPREF1078_RS03345 at 790.857 kb on - strand, within HMPREF1078_RS03345 at 790.857 kb on - strand, within HMPREF1078_RS03345 at 790.898 kb on + strand, within HMPREF1078_RS03345 at 790.898 kb on + strand, within HMPREF1078_RS03345 at 790.898 kb on + strand, within HMPREF1078_RS03345 at 790.937 kb on + strand, within HMPREF1078_RS03345 at 791.041 kb on + strand, within HMPREF1078_RS03350 at 791.041 kb on + strand, within HMPREF1078_RS03350 at 791.042 kb on - strand, within HMPREF1078_RS03350 at 791.088 kb on - strand, within HMPREF1078_RS03350 at 791.091 kb on + strand, within HMPREF1078_RS03350 at 791.239 kb on + strand, within HMPREF1078_RS03350 at 791.242 kb on + strand, within HMPREF1078_RS03350 at 791.242 kb on + strand, within HMPREF1078_RS03350 at 791.243 kb on - strand, within HMPREF1078_RS03350 at 791.327 kb on + strand at 791.343 kb on + strand at 791.394 kb on + strand at 791.395 kb on - strand at 791.396 kb on + strand at 791.396 kb on + strand at 791.396 kb on + strand at 791.396 kb on + strand at 791.397 kb on - strand at 791.397 kb on - strand at 791.397 kb on - strand at 791.398 kb on + strand at 791.398 kb on + strand at 791.398 kb on + strand at 791.398 kb on + strand at 791.468 kb on + strand, within HMPREF1078_RS03355 at 791.483 kb on - strand, within HMPREF1078_RS03355 at 791.567 kb on - strand, within HMPREF1078_RS03355 at 791.582 kb on - strand, within HMPREF1078_RS03355 at 791.612 kb on - strand, within HMPREF1078_RS03355 at 791.614 kb on + strand, within HMPREF1078_RS03355 at 791.660 kb on + strand, within HMPREF1078_RS03355 at 791.696 kb on + strand, within HMPREF1078_RS03355 at 791.696 kb on + strand, within HMPREF1078_RS03355 at 791.697 kb on - strand, within HMPREF1078_RS03355 at 791.767 kb on + strand, within HMPREF1078_RS03355 at 791.771 kb on + strand, within HMPREF1078_RS03355 at 791.771 kb on + strand, within HMPREF1078_RS03355 at 791.772 kb on - strand, within HMPREF1078_RS03355 at 791.772 kb on - strand, within HMPREF1078_RS03355 at 791.802 kb on - strand at 791.803 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.817 kb on - strand at 791.819 kb on + strand at 791.845 kb on + strand at 791.849 kb on - strand at 791.957 kb on + strand, within HMPREF1078_RS03360 at 791.958 kb on - strand, within HMPREF1078_RS03360 at 791.960 kb on + strand, within HMPREF1078_RS03360 at 791.961 kb on - strand, within HMPREF1078_RS03360 at 791.990 kb on + strand, within HMPREF1078_RS03360 at 791.991 kb on - strand, within HMPREF1078_RS03360 at 791.991 kb on - strand, within HMPREF1078_RS03360 at 792.016 kb on + strand, within HMPREF1078_RS03360 at 792.017 kb on - strand, within HMPREF1078_RS03360 at 792.022 kb on + strand, within HMPREF1078_RS03360 at 792.058 kb on + strand, within HMPREF1078_RS03360 at 792.100 kb on + strand, within HMPREF1078_RS03360 at 792.101 kb on - strand, within HMPREF1078_RS03360 at 792.117 kb on + strand, within HMPREF1078_RS03360 at 792.118 kb on - strand, within HMPREF1078_RS03360 at 792.257 kb on + strand, within HMPREF1078_RS03360 at 792.257 kb on + strand, within HMPREF1078_RS03360 at 792.296 kb on - strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.363 kb on - strand, within HMPREF1078_RS03360 at 792.363 kb on - strand, within HMPREF1078_RS03360 at 792.447 kb on + strand at 792.447 kb on + strand at 792.448 kb on - strand at 792.449 kb on + strand at 792.450 kb on - strand at 792.483 kb on - strand, within HMPREF1078_RS03365 at 792.504 kb on - strand, within HMPREF1078_RS03365 at 792.523 kb on + strand, within HMPREF1078_RS03365 at 792.523 kb on + strand, within HMPREF1078_RS03365 at 792.524 kb on - strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.563 kb on - strand, within HMPREF1078_RS03365 at 792.563 kb on - strand, within HMPREF1078_RS03365 at 792.563 kb on - strand, within HMPREF1078_RS03365 at 792.564 kb on + strand, within HMPREF1078_RS03365 at 792.702 kb on + strand, within HMPREF1078_RS03365 at 792.705 kb on + strand, within HMPREF1078_RS03365 at 792.727 kb on - strand, within HMPREF1078_RS03365 at 792.775 kb on + strand, within HMPREF1078_RS03365 at 792.775 kb on + strand, within HMPREF1078_RS03365 at 792.777 kb on + strand, within HMPREF1078_RS03365 at 792.777 kb on + strand, within HMPREF1078_RS03365 at 792.777 kb on + strand, within HMPREF1078_RS03365 at 792.778 kb on - strand, within HMPREF1078_RS03365 at 792.778 kb on - strand, within HMPREF1078_RS03365 at 792.814 kb on + strand at 792.815 kb on - strand at 792.823 kb on + strand at 792.826 kb on - strand at 792.837 kb on + strand at 792.837 kb on + strand at 792.838 kb on - strand at 792.838 kb on - strand at 792.843 kb on + strand at 792.843 kb on + strand at 792.843 kb on + strand at 792.866 kb on + strand at 792.867 kb on - strand at 792.867 kb on - strand at 792.879 kb on + strand at 792.974 kb on - strand, within HMPREF1078_RS03370 at 793.020 kb on + strand, within HMPREF1078_RS03370 at 793.028 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.031 kb on - strand, within HMPREF1078_RS03370 at 793.031 kb on - strand, within HMPREF1078_RS03370 at 793.035 kb on + strand, within HMPREF1078_RS03370 at 793.050 kb on + strand, within HMPREF1078_RS03370 at 793.051 kb on - strand, within HMPREF1078_RS03370 at 793.133 kb on + strand, within HMPREF1078_RS03370 at 793.133 kb on + strand, within HMPREF1078_RS03370 at 793.133 kb on + strand, within HMPREF1078_RS03370 at 793.134 kb on - strand, within HMPREF1078_RS03370 at 793.139 kb on + strand, within HMPREF1078_RS03370 at 793.152 kb on + strand, within HMPREF1078_RS03370 at 793.174 kb on - strand, within HMPREF1078_RS03370 at 793.209 kb on + strand, within HMPREF1078_RS03370 at 793.210 kb on - strand, within HMPREF1078_RS03370 at 793.252 kb on + strand, within HMPREF1078_RS03370 at 793.253 kb on - strand, within HMPREF1078_RS03370 at 793.253 kb on - strand, within HMPREF1078_RS03370 at 793.319 kb on + strand, within HMPREF1078_RS03370 at 793.320 kb on - strand, within HMPREF1078_RS03370 at 793.320 kb on - strand, within HMPREF1078_RS03370 at 793.339 kb on - strand, within HMPREF1078_RS03370 at 793.351 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.358 kb on - strand, within HMPREF1078_RS03370
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 790,856 + HMPREF1078_RS03345 0.62 -2.4 790,856 + HMPREF1078_RS03345 0.62 +0.2 790,857 - HMPREF1078_RS03345 0.62 -1.4 790,857 - HMPREF1078_RS03345 0.62 +0.5 790,898 + HMPREF1078_RS03345 0.76 +0.5 790,898 + HMPREF1078_RS03345 0.76 -1.4 790,898 + HMPREF1078_RS03345 0.76 -1.0 790,937 + HMPREF1078_RS03345 0.90 +0.6 791,041 + HMPREF1078_RS03350 0.17 +1.6 791,041 + HMPREF1078_RS03350 0.17 +1.2 791,042 - HMPREF1078_RS03350 0.18 +2.2 791,088 - HMPREF1078_RS03350 0.31 +2.2 791,091 + HMPREF1078_RS03350 0.31 -1.8 791,239 + HMPREF1078_RS03350 0.73 +1.7 791,242 + HMPREF1078_RS03350 0.74 -1.6 791,242 + HMPREF1078_RS03350 0.74 -0.4 791,243 - HMPREF1078_RS03350 0.74 +0.6 791,327 + -1.4 791,343 + -0.1 791,394 + -1.4 791,395 - -0.9 791,396 + -0.3 791,396 + +3.2 791,396 + -0.4 791,396 + +0.7 791,397 - -2.4 791,397 - -0.4 791,397 - +2.1 791,398 + -1.8 791,398 + +1.5 791,398 + +0.4 791,398 + +1.9 791,468 + HMPREF1078_RS03355 0.15 -2.5 791,483 - HMPREF1078_RS03355 0.19 -0.2 791,567 - HMPREF1078_RS03355 0.38 -0.4 791,582 - HMPREF1078_RS03355 0.41 -0.4 791,612 - HMPREF1078_RS03355 0.48 +0.8 791,614 + HMPREF1078_RS03355 0.49 -2.5 791,660 + HMPREF1078_RS03355 0.59 -0.4 791,696 + HMPREF1078_RS03355 0.68 +2.2 791,696 + HMPREF1078_RS03355 0.68 -1.1 791,697 - HMPREF1078_RS03355 0.68 -1.6 791,767 + HMPREF1078_RS03355 0.84 +0.5 791,771 + HMPREF1078_RS03355 0.85 -0.8 791,771 + HMPREF1078_RS03355 0.85 -0.6 791,772 - HMPREF1078_RS03355 0.85 -3.5 791,772 - HMPREF1078_RS03355 0.85 -0.4 791,802 - +1.2 791,803 + +2.6 791,816 + -1.1 791,816 + -1.4 791,816 + +1.8 791,816 + +0.7 791,816 + -1.9 791,817 - +0.9 791,819 + +0.2 791,845 + +1.0 791,849 - +0.9 791,957 + HMPREF1078_RS03360 0.22 -1.7 791,958 - HMPREF1078_RS03360 0.23 -0.9 791,960 + HMPREF1078_RS03360 0.23 -0.7 791,961 - HMPREF1078_RS03360 0.23 +0.2 791,990 + HMPREF1078_RS03360 0.28 -0.2 791,991 - HMPREF1078_RS03360 0.28 +0.2 791,991 - HMPREF1078_RS03360 0.28 -1.1 792,016 + HMPREF1078_RS03360 0.32 -0.8 792,017 - HMPREF1078_RS03360 0.32 -0.8 792,022 + HMPREF1078_RS03360 0.33 -1.4 792,058 + HMPREF1078_RS03360 0.39 -1.3 792,100 + HMPREF1078_RS03360 0.46 -0.8 792,101 - HMPREF1078_RS03360 0.46 +2.2 792,117 + HMPREF1078_RS03360 0.48 +0.2 792,118 - HMPREF1078_RS03360 0.49 -2.4 792,257 + HMPREF1078_RS03360 0.71 -2.6 792,257 + HMPREF1078_RS03360 0.71 +2.2 792,296 - HMPREF1078_RS03360 0.77 -0.4 792,362 + HMPREF1078_RS03360 0.88 +0.6 792,362 + HMPREF1078_RS03360 0.88 +2.2 792,362 + HMPREF1078_RS03360 0.88 -1.8 792,362 + HMPREF1078_RS03360 0.88 -1.1 792,363 - HMPREF1078_RS03360 0.88 -0.6 792,363 - HMPREF1078_RS03360 0.88 -0.1 792,447 + -1.4 792,447 + +0.1 792,448 - -1.4 792,449 + +0.2 792,450 - +2.0 792,483 - HMPREF1078_RS03365 0.11 -1.0 792,504 - HMPREF1078_RS03365 0.16 +4.0 792,523 + HMPREF1078_RS03365 0.21 +0.7 792,523 + HMPREF1078_RS03365 0.21 -0.4 792,524 - HMPREF1078_RS03365 0.21 -2.1 792,562 + HMPREF1078_RS03365 0.31 -1.3 792,562 + HMPREF1078_RS03365 0.31 +1.2 792,562 + HMPREF1078_RS03365 0.31 +0.4 792,562 + HMPREF1078_RS03365 0.31 -2.1 792,562 + HMPREF1078_RS03365 0.31 -0.8 792,563 - HMPREF1078_RS03365 0.31 -1.4 792,563 - HMPREF1078_RS03365 0.31 +2.6 792,563 - HMPREF1078_RS03365 0.31 +1.2 792,564 + HMPREF1078_RS03365 0.31 -1.9 792,702 + HMPREF1078_RS03365 0.66 +0.8 792,705 + HMPREF1078_RS03365 0.67 -1.1 792,727 - HMPREF1078_RS03365 0.72 +3.1 792,775 + HMPREF1078_RS03365 0.84 -0.4 792,775 + HMPREF1078_RS03365 0.84 -2.1 792,777 + HMPREF1078_RS03365 0.85 -1.6 792,777 + HMPREF1078_RS03365 0.85 +0.2 792,777 + HMPREF1078_RS03365 0.85 +1.5 792,778 - HMPREF1078_RS03365 0.85 -0.4 792,778 - HMPREF1078_RS03365 0.85 -0.6 792,814 + +0.6 792,815 - +1.0 792,823 + +1.2 792,826 - +0.9 792,837 + +0.1 792,837 + -1.1 792,838 - -0.9 792,838 - -0.9 792,843 + +1.8 792,843 + -1.1 792,843 + -1.1 792,866 + +0.7 792,867 - -1.1 792,867 - -0.6 792,879 + -0.8 792,974 - HMPREF1078_RS03370 0.13 -0.7 793,020 + HMPREF1078_RS03370 0.19 -0.8 793,028 + HMPREF1078_RS03370 0.20 +0.6 793,030 + HMPREF1078_RS03370 0.20 -0.1 793,030 + HMPREF1078_RS03370 0.20 -2.2 793,030 + HMPREF1078_RS03370 0.20 +1.0 793,030 + HMPREF1078_RS03370 0.20 +0.7 793,030 + HMPREF1078_RS03370 0.20 -0.8 793,030 + HMPREF1078_RS03370 0.20 +1.3 793,030 + HMPREF1078_RS03370 0.20 +0.5 793,031 - HMPREF1078_RS03370 0.20 -0.1 793,031 - HMPREF1078_RS03370 0.20 +2.2 793,035 + HMPREF1078_RS03370 0.21 -2.5 793,050 + HMPREF1078_RS03370 0.22 +1.2 793,051 - HMPREF1078_RS03370 0.23 -0.6 793,133 + HMPREF1078_RS03370 0.32 +1.2 793,133 + HMPREF1078_RS03370 0.32 -0.6 793,133 + HMPREF1078_RS03370 0.32 -1.4 793,134 - HMPREF1078_RS03370 0.33 -0.6 793,139 + HMPREF1078_RS03370 0.33 +1.1 793,152 + HMPREF1078_RS03370 0.35 +0.6 793,174 - HMPREF1078_RS03370 0.37 -0.9 793,209 + HMPREF1078_RS03370 0.42 +2.5 793,210 - HMPREF1078_RS03370 0.42 +1.2 793,252 + HMPREF1078_RS03370 0.47 +1.3 793,253 - HMPREF1078_RS03370 0.47 +0.2 793,253 - HMPREF1078_RS03370 0.47 +2.2 793,319 + HMPREF1078_RS03370 0.55 -0.9 793,320 - HMPREF1078_RS03370 0.55 -0.9 793,320 - HMPREF1078_RS03370 0.55 +0.2 793,339 - HMPREF1078_RS03370 0.57 +2.3 793,351 + HMPREF1078_RS03370 0.59 -1.1 793,357 + HMPREF1078_RS03370 0.60 -0.8 793,357 + HMPREF1078_RS03370 0.60 +1.1 793,357 + HMPREF1078_RS03370 0.60 +0.2 793,357 + HMPREF1078_RS03370 0.60 +1.2 793,358 - HMPREF1078_RS03370 0.60 +1.2
Or see this region's nucleotide sequence