Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02980 and HMPREF1078_RS02985 are separated by 10 nucleotides HMPREF1078_RS02985 and HMPREF1078_RS02990 are separated by 16 nucleotides HMPREF1078_RS02990 and HMPREF1078_RS02995 overlap by 8 nucleotides
HMPREF1078_RS02980: HMPREF1078_RS02980 - hypothetical protein, at 703,432 to 704,451
_RS02980
HMPREF1078_RS02985: HMPREF1078_RS02985 - hypothetical protein, at 704,462 to 705,364
_RS02985
HMPREF1078_RS02990: HMPREF1078_RS02990 - hypothetical protein, at 705,381 to 706,367
_RS02990
HMPREF1078_RS02995: HMPREF1078_RS02995 - hypothetical protein, at 706,360 to 708,009
_RS02995
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 704.446 kb on + strand at 704.447 kb on - strand at 704.451 kb on + strand at 704.451 kb on + strand at 704.451 kb on + strand at 704.463 kb on + strand at 704.472 kb on + strand at 704.475 kb on + strand at 704.488 kb on + strand at 704.524 kb on + strand at 704.699 kb on + strand, within HMPREF1078_RS02985 at 704.713 kb on + strand, within HMPREF1078_RS02985 at 704.797 kb on + strand, within HMPREF1078_RS02985 at 704.851 kb on + strand, within HMPREF1078_RS02985 at 704.880 kb on + strand, within HMPREF1078_RS02985 at 704.880 kb on + strand, within HMPREF1078_RS02985 at 704.880 kb on + strand, within HMPREF1078_RS02985 at 704.971 kb on + strand, within HMPREF1078_RS02985 at 704.971 kb on + strand, within HMPREF1078_RS02985 at 704.975 kb on + strand, within HMPREF1078_RS02985 at 704.977 kb on + strand, within HMPREF1078_RS02985 at 704.977 kb on + strand, within HMPREF1078_RS02985 at 705.025 kb on + strand, within HMPREF1078_RS02985 at 705.025 kb on + strand, within HMPREF1078_RS02985 at 705.028 kb on + strand, within HMPREF1078_RS02985 at 705.068 kb on + strand, within HMPREF1078_RS02985 at 705.124 kb on + strand, within HMPREF1078_RS02985 at 705.163 kb on + strand, within HMPREF1078_RS02985 at 705.163 kb on + strand, within HMPREF1078_RS02985 at 705.274 kb on + strand at 705.276 kb on + strand at 705.293 kb on + strand at 705.335 kb on + strand at 705.335 kb on + strand at 705.335 kb on + strand at 705.393 kb on + strand at 705.393 kb on + strand at 705.396 kb on + strand at 705.453 kb on + strand at 705.758 kb on + strand, within HMPREF1078_RS02990 at 706.147 kb on + strand, within HMPREF1078_RS02990 at 706.147 kb on + strand, within HMPREF1078_RS02990 at 706.147 kb on + strand, within HMPREF1078_RS02990 at 706.217 kb on + strand, within HMPREF1078_RS02990 at 706.217 kb on + strand, within HMPREF1078_RS02990 at 706.272 kb on + strand at 706.272 kb on + strand at 706.286 kb on + strand at 706.286 kb on + strand at 706.343 kb on - strand at 706.412 kb on + strand at 706.412 kb on + strand at 706.517 kb on + strand at 706.572 kb on + strand, within HMPREF1078_RS02995 at 706.589 kb on + strand, within HMPREF1078_RS02995 at 706.589 kb on + strand, within HMPREF1078_RS02995 at 706.589 kb on + strand, within HMPREF1078_RS02995 at 706.932 kb on + strand, within HMPREF1078_RS02995 at 707.118 kb on + strand, within HMPREF1078_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 704,446 + +3.2 704,447 - -1.7 704,451 + -1.0 704,451 + -1.6 704,451 + -0.7 704,463 + +1.2 704,472 + -0.3 704,475 + +0.1 704,488 + -1.0 704,524 + +0.2 704,699 + HMPREF1078_RS02985 0.26 -1.8 704,713 + HMPREF1078_RS02985 0.28 -2.1 704,797 + HMPREF1078_RS02985 0.37 +1.8 704,851 + HMPREF1078_RS02985 0.43 -0.1 704,880 + HMPREF1078_RS02985 0.46 -0.8 704,880 + HMPREF1078_RS02985 0.46 +1.2 704,880 + HMPREF1078_RS02985 0.46 -1.1 704,971 + HMPREF1078_RS02985 0.56 -0.3 704,971 + HMPREF1078_RS02985 0.56 +2.6 704,975 + HMPREF1078_RS02985 0.57 -1.3 704,977 + HMPREF1078_RS02985 0.57 -0.3 704,977 + HMPREF1078_RS02985 0.57 +0.7 705,025 + HMPREF1078_RS02985 0.62 +1.0 705,025 + HMPREF1078_RS02985 0.62 +2.0 705,028 + HMPREF1078_RS02985 0.63 +0.5 705,068 + HMPREF1078_RS02985 0.67 -1.3 705,124 + HMPREF1078_RS02985 0.73 -2.3 705,163 + HMPREF1078_RS02985 0.78 -1.8 705,163 + HMPREF1078_RS02985 0.78 +0.7 705,274 + +0.2 705,276 + -1.2 705,293 + +0.2 705,335 + +1.7 705,335 + +1.8 705,335 + -1.9 705,393 + +1.7 705,393 + +0.2 705,396 + -0.9 705,453 + -0.5 705,758 + HMPREF1078_RS02990 0.38 -2.6 706,147 + HMPREF1078_RS02990 0.78 +1.2 706,147 + HMPREF1078_RS02990 0.78 -1.7 706,147 + HMPREF1078_RS02990 0.78 -0.1 706,217 + HMPREF1078_RS02990 0.85 -2.2 706,217 + HMPREF1078_RS02990 0.85 -0.8 706,272 + -1.4 706,272 + +1.7 706,286 + +0.2 706,286 + +1.0 706,343 - -2.1 706,412 + +0.0 706,412 + -2.1 706,517 + +0.2 706,572 + HMPREF1078_RS02995 0.13 -1.8 706,589 + HMPREF1078_RS02995 0.14 -0.2 706,589 + HMPREF1078_RS02995 0.14 +0.0 706,589 + HMPREF1078_RS02995 0.14 +0.1 706,932 + HMPREF1078_RS02995 0.35 -0.1 707,118 + HMPREF1078_RS02995 0.46 +0.1
Or see this region's nucleotide sequence