Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02520 and HMPREF1078_RS02525 are separated by 32 nucleotides HMPREF1078_RS02525 and HMPREF1078_RS02530 are separated by 223 nucleotides
HMPREF1078_RS02520: HMPREF1078_RS02520 - NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein, at 627,553 to 629,346
_RS02520
HMPREF1078_RS02525: HMPREF1078_RS02525 - (2Fe-2S) ferredoxin domain-containing protein, at 629,379 to 629,777
_RS02525
HMPREF1078_RS02530: HMPREF1078_RS02530 - serine acetyltransferase, at 630,001 to 630,888
_RS02530
Position (kb) 629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 628.467 kb on + strand, within HMPREF1078_RS02520 at 628.467 kb on + strand, within HMPREF1078_RS02520 at 628.468 kb on - strand, within HMPREF1078_RS02520 at 628.523 kb on - strand, within HMPREF1078_RS02520 at 628.779 kb on - strand, within HMPREF1078_RS02520 at 628.924 kb on + strand, within HMPREF1078_RS02520 at 628.924 kb on + strand, within HMPREF1078_RS02520 at 628.924 kb on + strand, within HMPREF1078_RS02520 at 628.925 kb on - strand, within HMPREF1078_RS02520 at 628.929 kb on - strand, within HMPREF1078_RS02520 at 628.929 kb on - strand, within HMPREF1078_RS02520 at 628.929 kb on - strand, within HMPREF1078_RS02520 at 629.038 kb on + strand, within HMPREF1078_RS02520 at 629.038 kb on + strand, within HMPREF1078_RS02520 at 629.066 kb on + strand, within HMPREF1078_RS02520 at 629.066 kb on + strand, within HMPREF1078_RS02520 at 629.067 kb on - strand, within HMPREF1078_RS02520 at 629.067 kb on - strand, within HMPREF1078_RS02520 at 629.069 kb on - strand, within HMPREF1078_RS02520 at 629.085 kb on + strand, within HMPREF1078_RS02520 at 629.086 kb on - strand, within HMPREF1078_RS02520 at 629.086 kb on - strand, within HMPREF1078_RS02520 at 629.086 kb on - strand, within HMPREF1078_RS02520 at 629.086 kb on - strand, within HMPREF1078_RS02520 at 629.086 kb on - strand, within HMPREF1078_RS02520 at 629.148 kb on - strand, within HMPREF1078_RS02520 at 629.154 kb on + strand, within HMPREF1078_RS02520 at 629.154 kb on + strand, within HMPREF1078_RS02520 at 629.154 kb on + strand, within HMPREF1078_RS02520 at 629.154 kb on + strand, within HMPREF1078_RS02520 at 629.155 kb on - strand, within HMPREF1078_RS02520 at 629.172 kb on + strand at 629.242 kb on - strand at 629.275 kb on + strand at 629.324 kb on - strand at 629.325 kb on + strand at 629.326 kb on - strand at 629.326 kb on - strand at 629.328 kb on - strand at 629.328 kb on - strand at 629.328 kb on - strand at 629.328 kb on - strand at 629.331 kb on + strand at 629.331 kb on + strand at 629.332 kb on - strand at 629.332 kb on - strand at 629.332 kb on - strand at 629.336 kb on + strand at 629.351 kb on + strand at 629.351 kb on + strand at 629.351 kb on + strand at 629.355 kb on + strand at 629.355 kb on + strand at 629.356 kb on - strand at 629.358 kb on + strand at 629.359 kb on - strand at 629.359 kb on - strand at 629.390 kb on + strand at 629.401 kb on + strand at 629.446 kb on + strand, within HMPREF1078_RS02525 at 629.447 kb on - strand, within HMPREF1078_RS02525 at 629.502 kb on - strand, within HMPREF1078_RS02525 at 629.542 kb on + strand, within HMPREF1078_RS02525 at 629.549 kb on - strand, within HMPREF1078_RS02525 at 629.583 kb on + strand, within HMPREF1078_RS02525 at 629.584 kb on - strand, within HMPREF1078_RS02525 at 629.615 kb on - strand, within HMPREF1078_RS02525 at 629.660 kb on + strand, within HMPREF1078_RS02525 at 629.660 kb on + strand, within HMPREF1078_RS02525 at 629.661 kb on - strand, within HMPREF1078_RS02525 at 629.677 kb on - strand, within HMPREF1078_RS02525 at 629.677 kb on - strand, within HMPREF1078_RS02525 at 629.696 kb on + strand, within HMPREF1078_RS02525 at 629.709 kb on - strand, within HMPREF1078_RS02525 at 629.772 kb on - strand at 629.772 kb on - strand at 629.783 kb on - strand at 629.817 kb on + strand at 629.817 kb on + strand at 629.817 kb on + strand at 629.817 kb on + strand at 629.818 kb on - strand at 629.818 kb on - strand at 629.831 kb on + strand at 629.832 kb on - strand at 629.832 kb on - strand at 629.832 kb on - strand at 629.832 kb on - strand at 629.835 kb on + strand at 629.848 kb on + strand at 629.855 kb on + strand at 629.909 kb on - strand at 629.909 kb on - strand at 629.916 kb on - strand at 629.930 kb on + strand at 629.930 kb on + strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.958 kb on + strand at 629.958 kb on + strand at 629.987 kb on + strand at 629.987 kb on + strand at 629.988 kb on - strand at 630.002 kb on + strand at 630.010 kb on + strand at 630.535 kb on - strand, within HMPREF1078_RS02530 at 630.667 kb on + strand, within HMPREF1078_RS02530 at 630.668 kb on - strand, within HMPREF1078_RS02530 at 630.736 kb on - strand, within HMPREF1078_RS02530
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 628,467 + HMPREF1078_RS02520 0.51 -0.1 628,467 + HMPREF1078_RS02520 0.51 +0.2 628,468 - HMPREF1078_RS02520 0.51 +1.3 628,523 - HMPREF1078_RS02520 0.54 -0.6 628,779 - HMPREF1078_RS02520 0.68 +0.6 628,924 + HMPREF1078_RS02520 0.76 -1.4 628,924 + HMPREF1078_RS02520 0.76 +0.8 628,924 + HMPREF1078_RS02520 0.76 -0.1 628,925 - HMPREF1078_RS02520 0.76 +0.6 628,929 - HMPREF1078_RS02520 0.77 +0.4 628,929 - HMPREF1078_RS02520 0.77 -0.4 628,929 - HMPREF1078_RS02520 0.77 -0.1 629,038 + HMPREF1078_RS02520 0.83 -1.9 629,038 + HMPREF1078_RS02520 0.83 -1.6 629,066 + HMPREF1078_RS02520 0.84 -0.6 629,066 + HMPREF1078_RS02520 0.84 +0.2 629,067 - HMPREF1078_RS02520 0.84 -0.7 629,067 - HMPREF1078_RS02520 0.84 -1.6 629,069 - HMPREF1078_RS02520 0.85 +1.2 629,085 + HMPREF1078_RS02520 0.85 +0.2 629,086 - HMPREF1078_RS02520 0.85 -1.4 629,086 - HMPREF1078_RS02520 0.85 -0.4 629,086 - HMPREF1078_RS02520 0.85 -2.1 629,086 - HMPREF1078_RS02520 0.85 -1.6 629,086 - HMPREF1078_RS02520 0.85 -1.1 629,148 - HMPREF1078_RS02520 0.89 -1.1 629,154 + HMPREF1078_RS02520 0.89 -0.3 629,154 + HMPREF1078_RS02520 0.89 -1.7 629,154 + HMPREF1078_RS02520 0.89 -0.2 629,154 + HMPREF1078_RS02520 0.89 +1.6 629,155 - HMPREF1078_RS02520 0.89 -0.3 629,172 + -1.4 629,242 - +1.4 629,275 + +0.2 629,324 - -1.1 629,325 + -3.2 629,326 - +1.4 629,326 - +0.7 629,328 - +0.5 629,328 - -0.5 629,328 - -0.4 629,328 - -2.1 629,331 + -2.7 629,331 + -0.4 629,332 - -1.6 629,332 - +1.6 629,332 - -0.4 629,336 + +1.0 629,351 + +1.2 629,351 + -1.2 629,351 + +1.0 629,355 + +0.6 629,355 + -0.8 629,356 - -0.6 629,358 + +0.3 629,359 - -3.5 629,359 - -0.1 629,390 + -1.1 629,401 + +0.8 629,446 + HMPREF1078_RS02525 0.17 -1.4 629,447 - HMPREF1078_RS02525 0.17 +1.6 629,502 - HMPREF1078_RS02525 0.31 +0.4 629,542 + HMPREF1078_RS02525 0.41 +0.9 629,549 - HMPREF1078_RS02525 0.43 +0.1 629,583 + HMPREF1078_RS02525 0.51 +0.9 629,584 - HMPREF1078_RS02525 0.51 -0.4 629,615 - HMPREF1078_RS02525 0.59 -1.8 629,660 + HMPREF1078_RS02525 0.70 +0.1 629,660 + HMPREF1078_RS02525 0.70 +0.8 629,661 - HMPREF1078_RS02525 0.71 -0.4 629,677 - HMPREF1078_RS02525 0.75 +0.4 629,677 - HMPREF1078_RS02525 0.75 +0.2 629,696 + HMPREF1078_RS02525 0.79 -2.8 629,709 - HMPREF1078_RS02525 0.83 -0.9 629,772 - -0.2 629,772 - -0.5 629,783 - +0.6 629,817 + +2.2 629,817 + +0.2 629,817 + +1.2 629,817 + +0.1 629,818 - +0.2 629,818 - +0.2 629,831 + -1.5 629,832 - +2.1 629,832 - +2.0 629,832 - -0.4 629,832 - -1.5 629,835 + -2.1 629,848 + -0.8 629,855 + +0.4 629,909 - +1.5 629,909 - -0.4 629,916 - +2.2 629,930 + -0.4 629,930 + +0.2 629,931 - -0.8 629,931 - +1.0 629,931 - +0.7 629,958 + +0.2 629,958 + -0.0 629,987 + +0.2 629,987 + -2.1 629,988 - -0.3 630,002 + -1.1 630,010 + -0.4 630,535 - HMPREF1078_RS02530 0.60 -0.8 630,667 + HMPREF1078_RS02530 0.75 +0.2 630,668 - HMPREF1078_RS02530 0.75 +0.2 630,736 - HMPREF1078_RS02530 0.83 -1.1
Or see this region's nucleotide sequence