Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02430

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02425 and HMPREF1078_RS02430 are separated by 155 nucleotidesHMPREF1078_RS02430 and HMPREF1078_RS02435 are separated by 103 nucleotides HMPREF1078_RS02425: HMPREF1078_RS02425 - DUF6261 family protein, at 596,357 to 597,190 _RS02425 HMPREF1078_RS02430: HMPREF1078_RS02430 - lipocalin-like domain-containing protein, at 597,346 to 597,747 _RS02430 HMPREF1078_RS02435: HMPREF1078_RS02435 - glycoside hydrolase family 43 protein, at 597,851 to 598,963 _RS02435 Position (kb) 597 598Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 596.366 kb on + strandat 596.367 kb on - strandat 596.367 kb on - strandat 596.382 kb on + strandat 596.382 kb on + strandat 596.393 kb on + strandat 596.393 kb on + strandat 596.394 kb on - strandat 596.424 kb on - strandat 596.425 kb on + strandat 596.425 kb on + strandat 596.425 kb on + strandat 596.425 kb on + strandat 596.608 kb on + strand, within HMPREF1078_RS02425at 596.669 kb on + strand, within HMPREF1078_RS02425at 596.684 kb on - strand, within HMPREF1078_RS02425at 596.735 kb on + strand, within HMPREF1078_RS02425at 596.735 kb on + strand, within HMPREF1078_RS02425at 596.736 kb on - strand, within HMPREF1078_RS02425at 596.739 kb on + strand, within HMPREF1078_RS02425at 596.740 kb on - strand, within HMPREF1078_RS02425at 596.759 kb on + strand, within HMPREF1078_RS02425at 596.759 kb on + strand, within HMPREF1078_RS02425at 596.759 kb on + strand, within HMPREF1078_RS02425at 596.760 kb on - strand, within HMPREF1078_RS02425at 596.760 kb on - strand, within HMPREF1078_RS02425at 596.761 kb on + strand, within HMPREF1078_RS02425at 596.805 kb on + strand, within HMPREF1078_RS02425at 596.806 kb on - strand, within HMPREF1078_RS02425at 596.849 kb on + strand, within HMPREF1078_RS02425at 596.876 kb on + strand, within HMPREF1078_RS02425at 596.909 kb on + strand, within HMPREF1078_RS02425at 596.910 kb on - strand, within HMPREF1078_RS02425at 596.911 kb on + strand, within HMPREF1078_RS02425at 596.912 kb on - strand, within HMPREF1078_RS02425at 596.995 kb on - strand, within HMPREF1078_RS02425at 596.996 kb on + strand, within HMPREF1078_RS02425at 596.996 kb on + strand, within HMPREF1078_RS02425at 597.029 kb on + strand, within HMPREF1078_RS02425at 597.256 kb on - strandat 597.256 kb on - strandat 597.258 kb on - strandat 597.264 kb on - strandat 597.264 kb on - strandat 597.337 kb on - strandat 597.340 kb on + strandat 597.348 kb on - strandat 597.363 kb on + strandat 597.364 kb on - strandat 597.364 kb on - strandat 597.364 kb on - strandat 597.364 kb on - strandat 597.365 kb on + strandat 597.365 kb on + strandat 597.365 kb on + strandat 597.366 kb on - strandat 597.366 kb on - strandat 597.420 kb on + strand, within HMPREF1078_RS02430at 597.421 kb on - strand, within HMPREF1078_RS02430at 597.423 kb on - strand, within HMPREF1078_RS02430at 597.450 kb on + strand, within HMPREF1078_RS02430at 597.452 kb on + strand, within HMPREF1078_RS02430at 597.452 kb on + strand, within HMPREF1078_RS02430at 597.453 kb on - strand, within HMPREF1078_RS02430at 597.530 kb on + strand, within HMPREF1078_RS02430at 597.530 kb on + strand, within HMPREF1078_RS02430at 597.531 kb on - strand, within HMPREF1078_RS02430at 597.569 kb on + strand, within HMPREF1078_RS02430at 597.569 kb on + strand, within HMPREF1078_RS02430at 597.570 kb on - strand, within HMPREF1078_RS02430at 597.570 kb on - strand, within HMPREF1078_RS02430at 597.570 kb on - strand, within HMPREF1078_RS02430at 597.570 kb on - strand, within HMPREF1078_RS02430at 597.578 kb on + strand, within HMPREF1078_RS02430at 597.579 kb on - strand, within HMPREF1078_RS02430at 597.579 kb on - strand, within HMPREF1078_RS02430at 597.583 kb on - strand, within HMPREF1078_RS02430at 597.583 kb on - strand, within HMPREF1078_RS02430at 597.608 kb on + strand, within HMPREF1078_RS02430at 597.646 kb on + strand, within HMPREF1078_RS02430at 597.667 kb on - strand, within HMPREF1078_RS02430at 597.728 kb on - strandat 597.733 kb on + strandat 597.733 kb on + strandat 597.733 kb on + strandat 597.734 kb on - strandat 597.734 kb on - strandat 597.735 kb on + strandat 597.748 kb on - strandat 597.748 kb on - strandat 597.748 kb on - strandat 597.821 kb on - strandat 597.823 kb on + strandat 597.823 kb on + strandat 597.824 kb on - strandat 597.824 kb on - strandat 597.840 kb on - strandat 597.848 kb on + strandat 597.850 kb on + strandat 597.874 kb on - strandat 597.894 kb on + strandat 597.895 kb on - strandat 597.895 kb on - strandat 597.913 kb on - strandat 597.955 kb on + strandat 597.956 kb on - strandat 597.989 kb on + strand, within HMPREF1078_RS02435at 597.990 kb on - strand, within HMPREF1078_RS02435at 597.990 kb on - strand, within HMPREF1078_RS02435at 597.993 kb on + strand, within HMPREF1078_RS02435at 597.993 kb on + strand, within HMPREF1078_RS02435at 597.993 kb on + strand, within HMPREF1078_RS02435at 597.994 kb on - strand, within HMPREF1078_RS02435at 597.994 kb on - strand, within HMPREF1078_RS02435at 598.014 kb on + strand, within HMPREF1078_RS02435at 598.014 kb on + strand, within HMPREF1078_RS02435at 598.016 kb on + strand, within HMPREF1078_RS02435at 598.016 kb on + strand, within HMPREF1078_RS02435at 598.016 kb on + strand, within HMPREF1078_RS02435at 598.016 kb on + strand, within HMPREF1078_RS02435at 598.017 kb on - strand, within HMPREF1078_RS02435at 598.017 kb on - strand, within HMPREF1078_RS02435at 598.017 kb on - strand, within HMPREF1078_RS02435at 598.017 kb on - strand, within HMPREF1078_RS02435at 598.019 kb on + strand, within HMPREF1078_RS02435at 598.019 kb on + strand, within HMPREF1078_RS02435at 598.019 kb on + strand, within HMPREF1078_RS02435at 598.019 kb on + strand, within HMPREF1078_RS02435at 598.019 kb on + strand, within HMPREF1078_RS02435at 598.019 kb on + strand, within HMPREF1078_RS02435at 598.020 kb on - strand, within HMPREF1078_RS02435at 598.020 kb on - strand, within HMPREF1078_RS02435at 598.020 kb on - strand, within HMPREF1078_RS02435at 598.020 kb on - strand, within HMPREF1078_RS02435at 598.025 kb on + strand, within HMPREF1078_RS02435at 598.026 kb on - strand, within HMPREF1078_RS02435at 598.026 kb on - strand, within HMPREF1078_RS02435at 598.064 kb on + strand, within HMPREF1078_RS02435at 598.107 kb on + strand, within HMPREF1078_RS02435at 598.166 kb on + strand, within HMPREF1078_RS02435at 598.166 kb on + strand, within HMPREF1078_RS02435at 598.167 kb on - strand, within HMPREF1078_RS02435at 598.167 kb on - strand, within HMPREF1078_RS02435at 598.188 kb on - strand, within HMPREF1078_RS02435at 598.190 kb on - strand, within HMPREF1078_RS02435at 598.190 kb on - strand, within HMPREF1078_RS02435at 598.196 kb on + strand, within HMPREF1078_RS02435at 598.197 kb on - strand, within HMPREF1078_RS02435at 598.197 kb on - strand, within HMPREF1078_RS02435at 598.370 kb on + strand, within HMPREF1078_RS02435at 598.370 kb on + strand, within HMPREF1078_RS02435at 598.371 kb on - strand, within HMPREF1078_RS02435at 598.371 kb on - strand, within HMPREF1078_RS02435at 598.394 kb on + strand, within HMPREF1078_RS02435at 598.394 kb on + strand, within HMPREF1078_RS02435at 598.395 kb on - strand, within HMPREF1078_RS02435at 598.458 kb on + strand, within HMPREF1078_RS02435at 598.459 kb on - strand, within HMPREF1078_RS02435at 598.473 kb on + strand, within HMPREF1078_RS02435at 598.474 kb on - strand, within HMPREF1078_RS02435at 598.475 kb on + strand, within HMPREF1078_RS02435at 598.475 kb on + strand, within HMPREF1078_RS02435at 598.475 kb on + strand, within HMPREF1078_RS02435at 598.476 kb on - strand, within HMPREF1078_RS02435at 598.546 kb on - strand, within HMPREF1078_RS02435at 598.628 kb on + strand, within HMPREF1078_RS02435at 598.629 kb on - strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.632 kb on - strand, within HMPREF1078_RS02435at 598.648 kb on + strand, within HMPREF1078_RS02435at 598.649 kb on - strand, within HMPREF1078_RS02435at 598.652 kb on + strand, within HMPREF1078_RS02435at 598.653 kb on - strand, within HMPREF1078_RS02435at 598.655 kb on + strand, within HMPREF1078_RS02435at 598.656 kb on - strand, within HMPREF1078_RS02435at 598.657 kb on + strand, within HMPREF1078_RS02435at 598.657 kb on + strand, within HMPREF1078_RS02435at 598.657 kb on + strand, within HMPREF1078_RS02435at 598.658 kb on - strand, within HMPREF1078_RS02435at 598.658 kb on - strand, within HMPREF1078_RS02435at 598.665 kb on - strand, within HMPREF1078_RS02435at 598.677 kb on - strand, within HMPREF1078_RS02435

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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596,366 + -0.2
596,367 - +0.4
596,367 - -0.8
596,382 + +1.7
596,382 + -3.1
596,393 + -0.4
596,393 + +0.8
596,394 - +1.1
596,424 - +0.2
596,425 + -1.8
596,425 + +0.1
596,425 + +0.5
596,425 + -1.2
596,608 + HMPREF1078_RS02425 0.30 -0.3
596,669 + HMPREF1078_RS02425 0.37 -2.8
596,684 - HMPREF1078_RS02425 0.39 -0.2
596,735 + HMPREF1078_RS02425 0.45 -0.3
596,735 + HMPREF1078_RS02425 0.45 +1.4
596,736 - HMPREF1078_RS02425 0.45 -1.9
596,739 + HMPREF1078_RS02425 0.46 +0.3
596,740 - HMPREF1078_RS02425 0.46 +0.4
596,759 + HMPREF1078_RS02425 0.48 +0.8
596,759 + HMPREF1078_RS02425 0.48 -0.4
596,759 + HMPREF1078_RS02425 0.48 +1.0
596,760 - HMPREF1078_RS02425 0.48 -0.4
596,760 - HMPREF1078_RS02425 0.48 +0.6
596,761 + HMPREF1078_RS02425 0.48 -0.4
596,805 + HMPREF1078_RS02425 0.54 -0.6
596,806 - HMPREF1078_RS02425 0.54 -0.4
596,849 + HMPREF1078_RS02425 0.59 +1.7
596,876 + HMPREF1078_RS02425 0.62 +1.8
596,909 + HMPREF1078_RS02425 0.66 -0.4
596,910 - HMPREF1078_RS02425 0.66 +1.2
596,911 + HMPREF1078_RS02425 0.66 -2.8
596,912 - HMPREF1078_RS02425 0.67 +0.6
596,995 - HMPREF1078_RS02425 0.76 +1.2
596,996 + HMPREF1078_RS02425 0.77 +0.1
596,996 + HMPREF1078_RS02425 0.77 +1.1
597,029 + HMPREF1078_RS02425 0.81 +1.9
597,256 - +0.6
597,256 - +0.2
597,258 - -0.2
597,264 - +0.2
597,264 - -1.2
597,337 - -1.9
597,340 + +1.2
597,348 - +0.0
597,363 + -2.9
597,364 - -1.8
597,364 - -1.1
597,364 - -1.6
597,364 - -2.4
597,365 + -0.8
597,365 + -3.6
597,365 + -1.9
597,366 - -1.1
597,366 - -2.7
597,420 + HMPREF1078_RS02430 0.18 -2.9
597,421 - HMPREF1078_RS02430 0.19 +1.2
597,423 - HMPREF1078_RS02430 0.19 -1.7
597,450 + HMPREF1078_RS02430 0.26 -1.9
597,452 + HMPREF1078_RS02430 0.26 -2.5
597,452 + HMPREF1078_RS02430 0.26 -2.9
597,453 - HMPREF1078_RS02430 0.27 -0.4
597,530 + HMPREF1078_RS02430 0.46 +1.2
597,530 + HMPREF1078_RS02430 0.46 -1.6
597,531 - HMPREF1078_RS02430 0.46 -1.9
597,569 + HMPREF1078_RS02430 0.55 -1.1
597,569 + HMPREF1078_RS02430 0.55 -1.6
597,570 - HMPREF1078_RS02430 0.56 -1.4
597,570 - HMPREF1078_RS02430 0.56 -2.9
597,570 - HMPREF1078_RS02430 0.56 -2.1
597,570 - HMPREF1078_RS02430 0.56 -1.8
597,578 + HMPREF1078_RS02430 0.58 -3.0
597,579 - HMPREF1078_RS02430 0.58 -2.9
597,579 - HMPREF1078_RS02430 0.58 -3.9
597,583 - HMPREF1078_RS02430 0.59 -1.1
597,583 - HMPREF1078_RS02430 0.59 -2.7
597,608 + HMPREF1078_RS02430 0.65 -1.1
597,646 + HMPREF1078_RS02430 0.75 -1.4
597,667 - HMPREF1078_RS02430 0.80 -3.7
597,728 - -2.9
597,733 + -1.6
597,733 + -2.4
597,733 + -2.2
597,734 - -1.8
597,734 - -1.1
597,735 + -2.2
597,748 - -1.0
597,748 - -1.4
597,748 - -0.4
597,821 - -1.6
597,823 + -0.5
597,823 + -1.7
597,824 - -1.2
597,824 - -1.9
597,840 - +1.0
597,848 + -2.9
597,850 + +1.2
597,874 - -0.4
597,894 + +1.2
597,895 - -1.8
597,895 - +0.8
597,913 - +0.4
597,955 + +0.1
597,956 - +0.7
597,989 + HMPREF1078_RS02435 0.12 +0.4
597,990 - HMPREF1078_RS02435 0.12 +0.0
597,990 - HMPREF1078_RS02435 0.12 +1.2
597,993 + HMPREF1078_RS02435 0.13 +0.7
597,993 + HMPREF1078_RS02435 0.13 -1.3
597,993 + HMPREF1078_RS02435 0.13 +0.5
597,994 - HMPREF1078_RS02435 0.13 +1.4
597,994 - HMPREF1078_RS02435 0.13 -0.3
598,014 + HMPREF1078_RS02435 0.15 -2.2
598,014 + HMPREF1078_RS02435 0.15 +0.7
598,016 + HMPREF1078_RS02435 0.15 -2.0
598,016 + HMPREF1078_RS02435 0.15 -0.9
598,016 + HMPREF1078_RS02435 0.15 +0.5
598,016 + HMPREF1078_RS02435 0.15 -0.3
598,017 - HMPREF1078_RS02435 0.15 -1.4
598,017 - HMPREF1078_RS02435 0.15 +1.2
598,017 - HMPREF1078_RS02435 0.15 +0.5
598,017 - HMPREF1078_RS02435 0.15 +0.4
598,019 + HMPREF1078_RS02435 0.15 +0.7
598,019 + HMPREF1078_RS02435 0.15 +0.2
598,019 + HMPREF1078_RS02435 0.15 -1.9
598,019 + HMPREF1078_RS02435 0.15 +0.1
598,019 + HMPREF1078_RS02435 0.15 +1.8
598,019 + HMPREF1078_RS02435 0.15 -1.4
598,020 - HMPREF1078_RS02435 0.15 -2.4
598,020 - HMPREF1078_RS02435 0.15 +1.0
598,020 - HMPREF1078_RS02435 0.15 +0.2
598,020 - HMPREF1078_RS02435 0.15 -1.8
598,025 + HMPREF1078_RS02435 0.16 -3.2
598,026 - HMPREF1078_RS02435 0.16 -0.2
598,026 - HMPREF1078_RS02435 0.16 -2.6
598,064 + HMPREF1078_RS02435 0.19 +1.7
598,107 + HMPREF1078_RS02435 0.23 -0.4
598,166 + HMPREF1078_RS02435 0.28 -0.4
598,166 + HMPREF1078_RS02435 0.28 +0.0
598,167 - HMPREF1078_RS02435 0.28 +0.5
598,167 - HMPREF1078_RS02435 0.28 -1.6
598,188 - HMPREF1078_RS02435 0.30 +0.4
598,190 - HMPREF1078_RS02435 0.30 -1.7
598,190 - HMPREF1078_RS02435 0.30 +0.6
598,196 + HMPREF1078_RS02435 0.31 +1.2
598,197 - HMPREF1078_RS02435 0.31 -0.8
598,197 - HMPREF1078_RS02435 0.31 -2.1
598,370 + HMPREF1078_RS02435 0.47 +1.2
598,370 + HMPREF1078_RS02435 0.47 -0.6
598,371 - HMPREF1078_RS02435 0.47 +0.2
598,371 - HMPREF1078_RS02435 0.47 -0.0
598,394 + HMPREF1078_RS02435 0.49 +0.2
598,394 + HMPREF1078_RS02435 0.49 -0.1
598,395 - HMPREF1078_RS02435 0.49 -2.7
598,458 + HMPREF1078_RS02435 0.55 +1.2
598,459 - HMPREF1078_RS02435 0.55 +0.2
598,473 + HMPREF1078_RS02435 0.56 -0.0
598,474 - HMPREF1078_RS02435 0.56 -0.4
598,475 + HMPREF1078_RS02435 0.56 -0.0
598,475 + HMPREF1078_RS02435 0.56 +0.7
598,475 + HMPREF1078_RS02435 0.56 +0.2
598,476 - HMPREF1078_RS02435 0.56 +1.2
598,546 - HMPREF1078_RS02435 0.62 +0.2
598,628 + HMPREF1078_RS02435 0.70 +1.8
598,629 - HMPREF1078_RS02435 0.70 +1.1
598,630 + HMPREF1078_RS02435 0.70 +1.2
598,630 + HMPREF1078_RS02435 0.70 -0.6
598,630 + HMPREF1078_RS02435 0.70 -0.5
598,630 + HMPREF1078_RS02435 0.70 +1.2
598,631 - HMPREF1078_RS02435 0.70 -0.2
598,631 - HMPREF1078_RS02435 0.70 +1.4
598,631 - HMPREF1078_RS02435 0.70 -0.0
598,631 - HMPREF1078_RS02435 0.70 -2.5
598,632 - HMPREF1078_RS02435 0.70 +0.2
598,648 + HMPREF1078_RS02435 0.72 +2.2
598,649 - HMPREF1078_RS02435 0.72 -0.8
598,652 + HMPREF1078_RS02435 0.72 +2.2
598,653 - HMPREF1078_RS02435 0.72 +2.7
598,655 + HMPREF1078_RS02435 0.72 +1.2
598,656 - HMPREF1078_RS02435 0.72 +0.3
598,657 + HMPREF1078_RS02435 0.72 -0.4
598,657 + HMPREF1078_RS02435 0.72 +0.6
598,657 + HMPREF1078_RS02435 0.72 -0.5
598,658 - HMPREF1078_RS02435 0.73 -0.7
598,658 - HMPREF1078_RS02435 0.73 -0.2
598,665 - HMPREF1078_RS02435 0.73 +1.2
598,677 - HMPREF1078_RS02435 0.74 +0.5

Or see this region's nucleotide sequence