Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02415 and HMPREF1078_RS02420 are separated by 5 nucleotides HMPREF1078_RS02420 and HMPREF1078_RS02425 are separated by 391 nucleotides
HMPREF1078_RS02415: HMPREF1078_RS02415 - Tex family protein, at 593,336 to 595,477
_RS02415
HMPREF1078_RS02420: HMPREF1078_RS02420 - Cys-tRNA(Pro) deacylase, at 595,483 to 595,965
_RS02420
HMPREF1078_RS02425: HMPREF1078_RS02425 - DUF6261 family protein, at 596,357 to 597,190
_RS02425
Position (kb) 595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 594.510 kb on - strand, within HMPREF1078_RS02415 at 594.522 kb on + strand, within HMPREF1078_RS02415 at 594.790 kb on + strand, within HMPREF1078_RS02415 at 594.806 kb on - strand, within HMPREF1078_RS02415 at 594.808 kb on - strand, within HMPREF1078_RS02415 at 594.815 kb on + strand, within HMPREF1078_RS02415 at 594.816 kb on - strand, within HMPREF1078_RS02415 at 594.817 kb on + strand, within HMPREF1078_RS02415 at 594.818 kb on - strand, within HMPREF1078_RS02415 at 594.958 kb on + strand, within HMPREF1078_RS02415 at 594.970 kb on + strand, within HMPREF1078_RS02415 at 594.970 kb on + strand, within HMPREF1078_RS02415 at 594.970 kb on + strand, within HMPREF1078_RS02415 at 595.049 kb on - strand, within HMPREF1078_RS02415 at 595.107 kb on - strand, within HMPREF1078_RS02415 at 595.145 kb on - strand, within HMPREF1078_RS02415 at 595.273 kb on + strand at 595.275 kb on + strand at 595.275 kb on + strand at 595.330 kb on + strand at 595.623 kb on - strand, within HMPREF1078_RS02420 at 595.661 kb on - strand, within HMPREF1078_RS02420 at 595.777 kb on + strand, within HMPREF1078_RS02420 at 595.777 kb on + strand, within HMPREF1078_RS02420 at 595.828 kb on + strand, within HMPREF1078_RS02420 at 595.831 kb on - strand, within HMPREF1078_RS02420 at 595.864 kb on + strand, within HMPREF1078_RS02420 at 595.895 kb on + strand, within HMPREF1078_RS02420 at 595.953 kb on - strand at 595.972 kb on - strand at 595.976 kb on + strand at 595.977 kb on - strand at 595.993 kb on - strand at 595.993 kb on - strand at 596.007 kb on - strand at 596.007 kb on - strand at 596.007 kb on - strand at 596.038 kb on - strand at 596.280 kb on + strand at 596.308 kb on - strand at 596.311 kb on + strand at 596.312 kb on - strand at 596.312 kb on - strand at 596.312 kb on - strand at 596.335 kb on + strand at 596.335 kb on + strand at 596.366 kb on + strand at 596.367 kb on - strand at 596.367 kb on - strand at 596.382 kb on + strand at 596.382 kb on + strand at 596.393 kb on + strand at 596.393 kb on + strand at 596.394 kb on - strand at 596.424 kb on - strand at 596.425 kb on + strand at 596.425 kb on + strand at 596.425 kb on + strand at 596.425 kb on + strand at 596.608 kb on + strand, within HMPREF1078_RS02425 at 596.669 kb on + strand, within HMPREF1078_RS02425 at 596.684 kb on - strand, within HMPREF1078_RS02425 at 596.735 kb on + strand, within HMPREF1078_RS02425 at 596.735 kb on + strand, within HMPREF1078_RS02425 at 596.736 kb on - strand, within HMPREF1078_RS02425 at 596.739 kb on + strand, within HMPREF1078_RS02425 at 596.740 kb on - strand, within HMPREF1078_RS02425 at 596.759 kb on + strand, within HMPREF1078_RS02425 at 596.759 kb on + strand, within HMPREF1078_RS02425 at 596.759 kb on + strand, within HMPREF1078_RS02425 at 596.760 kb on - strand, within HMPREF1078_RS02425 at 596.760 kb on - strand, within HMPREF1078_RS02425 at 596.761 kb on + strand, within HMPREF1078_RS02425 at 596.805 kb on + strand, within HMPREF1078_RS02425 at 596.806 kb on - strand, within HMPREF1078_RS02425 at 596.849 kb on + strand, within HMPREF1078_RS02425 at 596.876 kb on + strand, within HMPREF1078_RS02425 at 596.909 kb on + strand, within HMPREF1078_RS02425 at 596.910 kb on - strand, within HMPREF1078_RS02425 at 596.911 kb on + strand, within HMPREF1078_RS02425 at 596.912 kb on - strand, within HMPREF1078_RS02425
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 594,510 - HMPREF1078_RS02415 0.55 +0.2 594,522 + HMPREF1078_RS02415 0.55 +0.7 594,790 + HMPREF1078_RS02415 0.68 +0.2 594,806 - HMPREF1078_RS02415 0.69 -0.2 594,808 - HMPREF1078_RS02415 0.69 +0.5 594,815 + HMPREF1078_RS02415 0.69 -0.3 594,816 - HMPREF1078_RS02415 0.69 +0.5 594,817 + HMPREF1078_RS02415 0.69 +1.2 594,818 - HMPREF1078_RS02415 0.69 +0.2 594,958 + HMPREF1078_RS02415 0.76 -0.4 594,970 + HMPREF1078_RS02415 0.76 -1.1 594,970 + HMPREF1078_RS02415 0.76 +0.1 594,970 + HMPREF1078_RS02415 0.76 -0.2 595,049 - HMPREF1078_RS02415 0.80 -0.8 595,107 - HMPREF1078_RS02415 0.83 -0.0 595,145 - HMPREF1078_RS02415 0.84 +0.4 595,273 + -1.1 595,275 + +1.2 595,275 + -0.4 595,330 + -1.6 595,623 - HMPREF1078_RS02420 0.29 -0.7 595,661 - HMPREF1078_RS02420 0.37 +1.2 595,777 + HMPREF1078_RS02420 0.61 +0.6 595,777 + HMPREF1078_RS02420 0.61 -1.1 595,828 + HMPREF1078_RS02420 0.71 +0.6 595,831 - HMPREF1078_RS02420 0.72 -1.1 595,864 + HMPREF1078_RS02420 0.79 -0.8 595,895 + HMPREF1078_RS02420 0.85 -0.1 595,953 - +2.8 595,972 - +0.6 595,976 + -0.9 595,977 - +0.2 595,993 - +0.5 595,993 - -0.5 596,007 - +0.2 596,007 - -0.0 596,007 - +2.0 596,038 - +0.8 596,280 + -0.8 596,308 - +1.5 596,311 + -1.6 596,312 - +1.1 596,312 - +1.0 596,312 - +0.4 596,335 + -2.0 596,335 + +0.2 596,366 + -0.2 596,367 - +0.4 596,367 - -0.8 596,382 + +1.7 596,382 + -3.1 596,393 + -0.4 596,393 + +0.8 596,394 - +1.1 596,424 - +0.2 596,425 + -1.8 596,425 + +0.1 596,425 + +0.5 596,425 + -1.2 596,608 + HMPREF1078_RS02425 0.30 -0.3 596,669 + HMPREF1078_RS02425 0.37 -2.8 596,684 - HMPREF1078_RS02425 0.39 -0.2 596,735 + HMPREF1078_RS02425 0.45 -0.3 596,735 + HMPREF1078_RS02425 0.45 +1.4 596,736 - HMPREF1078_RS02425 0.45 -1.9 596,739 + HMPREF1078_RS02425 0.46 +0.3 596,740 - HMPREF1078_RS02425 0.46 +0.4 596,759 + HMPREF1078_RS02425 0.48 +0.8 596,759 + HMPREF1078_RS02425 0.48 -0.4 596,759 + HMPREF1078_RS02425 0.48 +1.0 596,760 - HMPREF1078_RS02425 0.48 -0.4 596,760 - HMPREF1078_RS02425 0.48 +0.6 596,761 + HMPREF1078_RS02425 0.48 -0.4 596,805 + HMPREF1078_RS02425 0.54 -0.6 596,806 - HMPREF1078_RS02425 0.54 -0.4 596,849 + HMPREF1078_RS02425 0.59 +1.7 596,876 + HMPREF1078_RS02425 0.62 +1.8 596,909 + HMPREF1078_RS02425 0.66 -0.4 596,910 - HMPREF1078_RS02425 0.66 +1.2 596,911 + HMPREF1078_RS02425 0.66 -2.8 596,912 - HMPREF1078_RS02425 0.67 +0.6
Or see this region's nucleotide sequence