Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02155 and HMPREF1078_RS02160 are separated by 49 nucleotides HMPREF1078_RS02160 and HMPREF1078_RS02165 are separated by 35 nucleotides HMPREF1078_RS02165 and HMPREF1078_RS02170 are separated by 123 nucleotides HMPREF1078_RS02170 and HMPREF1078_RS02175 are separated by 75 nucleotides HMPREF1078_RS02175 and HMPREF1078_RS02180 are separated by 229 nucleotides
HMPREF1078_RS02155: HMPREF1078_RS02155 - hypothetical protein, at 537,409 to 537,579
_RS02155
HMPREF1078_RS02160: HMPREF1078_RS02160 - tRNA-Arg, at 537,629 to 537,702
_RS02160
HMPREF1078_RS02165: HMPREF1078_RS02165 - tRNA-Arg, at 537,738 to 537,814
_RS02165
HMPREF1078_RS02170: HMPREF1078_RS02170 - tRNA-Arg, at 537,938 to 538,014
_RS02170
HMPREF1078_RS02175: HMPREF1078_RS02175 - patatin-like phospholipase family protein, at 538,090 to 540,405
_RS02175
HMPREF1078_RS02180: HMPREF1078_RS02180 - molecular chaperone HtpG, at 540,635 to 542,686
_RS02180
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 537.141 kb on - strand at 537.148 kb on + strand at 537.161 kb on - strand at 537.167 kb on + strand at 537.167 kb on + strand at 537.168 kb on - strand at 537.212 kb on - strand at 537.265 kb on + strand at 537.280 kb on - strand at 537.299 kb on + strand at 537.364 kb on + strand at 537.365 kb on - strand at 537.365 kb on - strand at 537.365 kb on - strand at 537.365 kb on - strand at 537.366 kb on + strand at 537.366 kb on + strand at 537.367 kb on - strand at 537.367 kb on - strand at 537.378 kb on - strand at 537.408 kb on + strand at 537.419 kb on - strand at 537.479 kb on + strand, within HMPREF1078_RS02155 at 537.479 kb on + strand, within HMPREF1078_RS02155 at 537.479 kb on + strand, within HMPREF1078_RS02155 at 537.500 kb on - strand, within HMPREF1078_RS02155 at 537.552 kb on + strand, within HMPREF1078_RS02155 at 537.553 kb on - strand, within HMPREF1078_RS02155 at 537.605 kb on + strand at 537.606 kb on - strand at 537.606 kb on - strand at 537.613 kb on - strand at 537.681 kb on + strand, within HMPREF1078_RS02160 at 537.694 kb on + strand, within HMPREF1078_RS02160 at 537.712 kb on - strand at 537.733 kb on + strand at 537.734 kb on - strand at 537.734 kb on - strand at 538.179 kb on - strand at 538.208 kb on - strand at 538.231 kb on - strand at 538.232 kb on + strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.277 kb on + strand at 538.278 kb on - strand at 538.278 kb on - strand at 538.278 kb on - strand at 538.278 kb on - strand at 538.295 kb on - strand at 538.295 kb on - strand at 538.295 kb on - strand at 538.309 kb on + strand at 538.335 kb on - strand, within HMPREF1078_RS02175 at 538.335 kb on - strand, within HMPREF1078_RS02175 at 538.440 kb on + strand, within HMPREF1078_RS02175 at 538.487 kb on + strand, within HMPREF1078_RS02175 at 538.519 kb on + strand, within HMPREF1078_RS02175 at 538.565 kb on + strand, within HMPREF1078_RS02175 at 538.626 kb on + strand, within HMPREF1078_RS02175 at 538.628 kb on + strand, within HMPREF1078_RS02175 at 538.632 kb on + strand, within HMPREF1078_RS02175 at 538.649 kb on + strand, within HMPREF1078_RS02175 at 538.649 kb on + strand, within HMPREF1078_RS02175 at 538.667 kb on - strand, within HMPREF1078_RS02175 at 538.670 kb on + strand, within HMPREF1078_RS02175 at 538.671 kb on - strand, within HMPREF1078_RS02175 at 538.682 kb on - strand, within HMPREF1078_RS02175 at 538.716 kb on + strand, within HMPREF1078_RS02175 at 538.717 kb on - strand, within HMPREF1078_RS02175 at 538.717 kb on - strand, within HMPREF1078_RS02175 at 538.766 kb on + strand, within HMPREF1078_RS02175 at 538.766 kb on + strand, within HMPREF1078_RS02175 at 538.767 kb on - strand, within HMPREF1078_RS02175 at 538.767 kb on - strand, within HMPREF1078_RS02175 at 538.767 kb on - strand, within HMPREF1078_RS02175 at 538.774 kb on - strand, within HMPREF1078_RS02175 at 538.774 kb on - strand, within HMPREF1078_RS02175 at 538.821 kb on - strand, within HMPREF1078_RS02175 at 538.823 kb on + strand, within HMPREF1078_RS02175 at 538.937 kb on - strand, within HMPREF1078_RS02175 at 539.007 kb on - strand, within HMPREF1078_RS02175 at 539.007 kb on - strand, within HMPREF1078_RS02175 at 539.030 kb on + strand, within HMPREF1078_RS02175 at 539.034 kb on + strand, within HMPREF1078_RS02175 at 539.034 kb on + strand, within HMPREF1078_RS02175 at 539.090 kb on - strand, within HMPREF1078_RS02175 at 539.114 kb on + strand, within HMPREF1078_RS02175 at 539.153 kb on + strand, within HMPREF1078_RS02175 at 539.154 kb on - strand, within HMPREF1078_RS02175 at 539.244 kb on - strand, within HMPREF1078_RS02175 at 539.260 kb on + strand, within HMPREF1078_RS02175 at 539.279 kb on + strand, within HMPREF1078_RS02175 at 539.298 kb on - strand, within HMPREF1078_RS02175 at 539.364 kb on - strand, within HMPREF1078_RS02175 at 539.396 kb on + strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.397 kb on - strand, within HMPREF1078_RS02175 at 539.398 kb on + strand, within HMPREF1078_RS02175 at 539.399 kb on - strand, within HMPREF1078_RS02175 at 539.399 kb on - strand, within HMPREF1078_RS02175 at 539.399 kb on - strand, within HMPREF1078_RS02175 at 539.400 kb on + strand, within HMPREF1078_RS02175 at 539.400 kb on + strand, within HMPREF1078_RS02175 at 539.422 kb on + strand, within HMPREF1078_RS02175 at 539.422 kb on + strand, within HMPREF1078_RS02175 at 539.423 kb on - strand, within HMPREF1078_RS02175 at 539.436 kb on - strand, within HMPREF1078_RS02175 at 539.525 kb on + strand, within HMPREF1078_RS02175 at 539.525 kb on + strand, within HMPREF1078_RS02175 at 539.601 kb on + strand, within HMPREF1078_RS02175 at 539.601 kb on + strand, within HMPREF1078_RS02175 at 539.602 kb on - strand, within HMPREF1078_RS02175 at 539.624 kb on + strand, within HMPREF1078_RS02175 at 539.765 kb on + strand, within HMPREF1078_RS02175 at 539.766 kb on - strand, within HMPREF1078_RS02175 at 539.891 kb on + strand, within HMPREF1078_RS02175 at 539.892 kb on - strand, within HMPREF1078_RS02175 at 539.979 kb on + strand, within HMPREF1078_RS02175 at 540.044 kb on - strand, within HMPREF1078_RS02175 at 540.062 kb on - strand, within HMPREF1078_RS02175 at 540.108 kb on - strand, within HMPREF1078_RS02175 at 540.117 kb on - strand, within HMPREF1078_RS02175 at 540.147 kb on - strand, within HMPREF1078_RS02175 at 540.192 kb on + strand at 540.192 kb on + strand at 540.192 kb on + strand at 540.192 kb on + strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.195 kb on - strand at 540.214 kb on - strand at 540.248 kb on + strand at 540.249 kb on - strand at 540.249 kb on - strand at 540.337 kb on + strand at 540.362 kb on - strand at 540.389 kb on - strand at 540.395 kb on - strand at 540.405 kb on + strand at 540.411 kb on + strand at 540.411 kb on + strand at 540.458 kb on + strand at 540.459 kb on - strand at 540.475 kb on + strand at 540.475 kb on + strand at 540.476 kb on - strand at 540.489 kb on + strand at 540.719 kb on + strand at 540.719 kb on + strand at 540.720 kb on - strand at 540.720 kb on - strand at 540.723 kb on - strand at 540.753 kb on + strand at 540.818 kb on - strand at 540.818 kb on - strand at 540.971 kb on - strand, within HMPREF1078_RS02180 at 541.005 kb on + strand, within HMPREF1078_RS02180 at 541.036 kb on + strand, within HMPREF1078_RS02180 at 541.036 kb on + strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.075 kb on + strand, within HMPREF1078_RS02180 at 541.077 kb on + strand, within HMPREF1078_RS02180 at 541.077 kb on + strand, within HMPREF1078_RS02180 at 541.313 kb on + strand, within HMPREF1078_RS02180 at 541.316 kb on - strand, within HMPREF1078_RS02180 at 541.316 kb on - strand, within HMPREF1078_RS02180 at 541.356 kb on + strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.390 kb on - strand, within HMPREF1078_RS02180
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 537,141 - -0.3 537,148 + -0.3 537,161 - +0.7 537,167 + -2.8 537,167 + -0.3 537,168 - -0.3 537,212 - -0.6 537,265 + -1.4 537,280 - -0.3 537,299 + -0.5 537,364 + -1.8 537,365 - -2.2 537,365 - -0.3 537,365 - -0.3 537,365 - +0.7 537,366 + +0.4 537,366 + +2.2 537,367 - -1.8 537,367 - +3.2 537,378 - +0.5 537,408 + -1.3 537,419 - +0.2 537,479 + HMPREF1078_RS02155 0.41 +0.7 537,479 + HMPREF1078_RS02155 0.41 +1.2 537,479 + HMPREF1078_RS02155 0.41 +0.5 537,500 - HMPREF1078_RS02155 0.53 +0.4 537,552 + HMPREF1078_RS02155 0.84 +0.9 537,553 - HMPREF1078_RS02155 0.84 +3.4 537,605 + -1.1 537,606 - -0.8 537,606 - -1.5 537,613 - +0.8 537,681 + HMPREF1078_RS02160 0.70 +0.2 537,694 + HMPREF1078_RS02160 0.88 +0.2 537,712 - +0.8 537,733 + -1.3 537,734 - -1.0 537,734 - -0.9 538,179 - -2.3 538,208 - -2.5 538,231 - -4.9 538,232 + -1.8 538,233 - -2.1 538,233 - +0.2 538,277 + -2.6 538,278 - -3.7 538,278 - -3.8 538,278 - -3.5 538,278 - -3.1 538,295 - -0.3 538,295 - -3.2 538,295 - -3.6 538,309 + -2.3 538,335 - HMPREF1078_RS02175 0.11 -3.9 538,335 - HMPREF1078_RS02175 0.11 -4.2 538,440 + HMPREF1078_RS02175 0.15 -1.6 538,487 + HMPREF1078_RS02175 0.17 -1.0 538,519 + HMPREF1078_RS02175 0.19 -3.7 538,565 + HMPREF1078_RS02175 0.21 -2.1 538,626 + HMPREF1078_RS02175 0.23 -3.7 538,628 + HMPREF1078_RS02175 0.23 -3.2 538,632 + HMPREF1078_RS02175 0.23 -0.4 538,649 + HMPREF1078_RS02175 0.24 -2.9 538,649 + HMPREF1078_RS02175 0.24 -3.0 538,667 - HMPREF1078_RS02175 0.25 -1.9 538,670 + HMPREF1078_RS02175 0.25 -0.8 538,671 - HMPREF1078_RS02175 0.25 +1.0 538,682 - HMPREF1078_RS02175 0.26 -2.6 538,716 + HMPREF1078_RS02175 0.27 -1.1 538,717 - HMPREF1078_RS02175 0.27 -3.4 538,717 - HMPREF1078_RS02175 0.27 -2.9 538,766 + HMPREF1078_RS02175 0.29 -0.4 538,766 + HMPREF1078_RS02175 0.29 -1.6 538,767 - HMPREF1078_RS02175 0.29 -3.7 538,767 - HMPREF1078_RS02175 0.29 -0.8 538,767 - HMPREF1078_RS02175 0.29 -4.5 538,774 - HMPREF1078_RS02175 0.30 -6.2 538,774 - HMPREF1078_RS02175 0.30 -2.6 538,821 - HMPREF1078_RS02175 0.32 +0.2 538,823 + HMPREF1078_RS02175 0.32 -1.9 538,937 - HMPREF1078_RS02175 0.37 -3.6 539,007 - HMPREF1078_RS02175 0.40 -2.8 539,007 - HMPREF1078_RS02175 0.40 -3.7 539,030 + HMPREF1078_RS02175 0.41 -3.1 539,034 + HMPREF1078_RS02175 0.41 -2.2 539,034 + HMPREF1078_RS02175 0.41 +0.2 539,090 - HMPREF1078_RS02175 0.43 -3.9 539,114 + HMPREF1078_RS02175 0.44 +0.2 539,153 + HMPREF1078_RS02175 0.46 -1.8 539,154 - HMPREF1078_RS02175 0.46 -1.8 539,244 - HMPREF1078_RS02175 0.50 -2.9 539,260 + HMPREF1078_RS02175 0.51 -1.9 539,279 + HMPREF1078_RS02175 0.51 -1.1 539,298 - HMPREF1078_RS02175 0.52 -4.5 539,364 - HMPREF1078_RS02175 0.55 -2.6 539,396 + HMPREF1078_RS02175 0.56 -1.1 539,397 - HMPREF1078_RS02175 0.56 +0.2 539,397 - HMPREF1078_RS02175 0.56 -1.6 539,397 - HMPREF1078_RS02175 0.56 -2.2 539,397 - HMPREF1078_RS02175 0.56 -2.4 539,397 - HMPREF1078_RS02175 0.56 -1.4 539,398 + HMPREF1078_RS02175 0.56 -2.5 539,399 - HMPREF1078_RS02175 0.57 -0.9 539,399 - HMPREF1078_RS02175 0.57 -2.5 539,399 - HMPREF1078_RS02175 0.57 -2.1 539,400 + HMPREF1078_RS02175 0.57 -1.4 539,400 + HMPREF1078_RS02175 0.57 +0.2 539,422 + HMPREF1078_RS02175 0.58 -1.4 539,422 + HMPREF1078_RS02175 0.58 -2.5 539,423 - HMPREF1078_RS02175 0.58 -2.7 539,436 - HMPREF1078_RS02175 0.58 -2.8 539,525 + HMPREF1078_RS02175 0.62 -1.6 539,525 + HMPREF1078_RS02175 0.62 -1.4 539,601 + HMPREF1078_RS02175 0.65 -3.1 539,601 + HMPREF1078_RS02175 0.65 -2.9 539,602 - HMPREF1078_RS02175 0.65 -1.4 539,624 + HMPREF1078_RS02175 0.66 -1.4 539,765 + HMPREF1078_RS02175 0.72 -2.1 539,766 - HMPREF1078_RS02175 0.72 -1.1 539,891 + HMPREF1078_RS02175 0.78 +1.2 539,892 - HMPREF1078_RS02175 0.78 -2.1 539,979 + HMPREF1078_RS02175 0.82 -3.3 540,044 - HMPREF1078_RS02175 0.84 -3.3 540,062 - HMPREF1078_RS02175 0.85 -1.9 540,108 - HMPREF1078_RS02175 0.87 +1.2 540,117 - HMPREF1078_RS02175 0.88 -3.0 540,147 - HMPREF1078_RS02175 0.89 -2.4 540,192 + -1.1 540,192 + +0.2 540,192 + -2.5 540,192 + -1.8 540,193 - -3.2 540,193 - -1.8 540,193 - -3.0 540,193 - +1.2 540,193 - -2.8 540,193 - -2.5 540,193 - -1.4 540,195 - -4.1 540,214 - -3.9 540,248 + -1.9 540,249 - -1.4 540,249 - -3.3 540,337 + -2.2 540,362 - -2.8 540,389 - -2.4 540,395 - -1.1 540,405 + -2.9 540,411 + -2.9 540,411 + -0.8 540,458 + -3.4 540,459 - +1.3 540,475 + -2.2 540,475 + -3.0 540,476 - -1.1 540,489 + -1.7 540,719 + +1.2 540,719 + -0.4 540,720 - +0.2 540,720 - +0.6 540,723 - -0.6 540,753 + +1.2 540,818 - -0.6 540,818 - -0.0 540,971 - HMPREF1078_RS02180 0.16 -0.2 541,005 + HMPREF1078_RS02180 0.18 +1.2 541,036 + HMPREF1078_RS02180 0.20 +1.6 541,036 + HMPREF1078_RS02180 0.20 +1.5 541,037 - HMPREF1078_RS02180 0.20 +0.3 541,037 - HMPREF1078_RS02180 0.20 +0.2 541,037 - HMPREF1078_RS02180 0.20 +1.6 541,037 - HMPREF1078_RS02180 0.20 +0.6 541,037 - HMPREF1078_RS02180 0.20 +0.4 541,075 + HMPREF1078_RS02180 0.21 +1.2 541,077 + HMPREF1078_RS02180 0.22 +2.2 541,077 + HMPREF1078_RS02180 0.22 -2.1 541,313 + HMPREF1078_RS02180 0.33 +0.2 541,316 - HMPREF1078_RS02180 0.33 +0.3 541,316 - HMPREF1078_RS02180 0.33 -2.1 541,356 + HMPREF1078_RS02180 0.35 -0.4 541,384 - HMPREF1078_RS02180 0.37 +1.2 541,384 - HMPREF1078_RS02180 0.37 -0.3 541,384 - HMPREF1078_RS02180 0.37 +0.4 541,390 - HMPREF1078_RS02180 0.37 +0.0
Or see this region's nucleotide sequence