Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01690 and HMPREF1078_RS01695 are separated by 34 nucleotides HMPREF1078_RS01695 and HMPREF1078_RS01700 are separated by 73 nucleotides HMPREF1078_RS01700 and HMPREF1078_RS01705 are separated by 110 nucleotides
HMPREF1078_RS01690: HMPREF1078_RS01690 - SLC13 family permease, at 424,867 to 426,420
_RS01690
HMPREF1078_RS01695: HMPREF1078_RS01695 - four helix bundle protein, at 426,455 to 426,820
_RS01695
HMPREF1078_RS01700: HMPREF1078_RS01700 - adenylyl-sulfate kinase, at 426,894 to 427,469
_RS01700
HMPREF1078_RS01705: HMPREF1078_RS01705 - sulfate adenylyltransferase subunit CysD, at 427,580 to 428,488
_RS01705
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 425.970 kb on + strand, within HMPREF1078_RS01690 at 425.977 kb on + strand, within HMPREF1078_RS01690 at 425.977 kb on + strand, within HMPREF1078_RS01690 at 425.979 kb on + strand, within HMPREF1078_RS01690 at 425.979 kb on + strand, within HMPREF1078_RS01690 at 425.980 kb on - strand, within HMPREF1078_RS01690 at 425.980 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 426.081 kb on + strand, within HMPREF1078_RS01690 at 426.082 kb on - strand, within HMPREF1078_RS01690 at 426.103 kb on + strand, within HMPREF1078_RS01690 at 426.103 kb on + strand, within HMPREF1078_RS01690 at 426.104 kb on - strand, within HMPREF1078_RS01690 at 426.111 kb on - strand, within HMPREF1078_RS01690 at 426.126 kb on + strand, within HMPREF1078_RS01690 at 426.139 kb on - strand, within HMPREF1078_RS01690 at 426.156 kb on + strand, within HMPREF1078_RS01690 at 426.253 kb on - strand, within HMPREF1078_RS01690 at 426.277 kb on - strand at 426.315 kb on + strand at 426.326 kb on - strand at 426.327 kb on + strand at 426.327 kb on + strand at 426.327 kb on + strand at 426.328 kb on - strand at 426.513 kb on + strand, within HMPREF1078_RS01695 at 426.513 kb on + strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.517 kb on + strand, within HMPREF1078_RS01695 at 426.517 kb on + strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.523 kb on - strand, within HMPREF1078_RS01695 at 426.525 kb on + strand, within HMPREF1078_RS01695 at 426.525 kb on + strand, within HMPREF1078_RS01695 at 426.526 kb on - strand, within HMPREF1078_RS01695 at 426.526 kb on - strand, within HMPREF1078_RS01695 at 426.527 kb on + strand, within HMPREF1078_RS01695 at 426.528 kb on - strand, within HMPREF1078_RS01695 at 426.632 kb on - strand, within HMPREF1078_RS01695 at 426.643 kb on + strand, within HMPREF1078_RS01695 at 426.646 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.738 kb on + strand, within HMPREF1078_RS01695 at 426.776 kb on - strand, within HMPREF1078_RS01695 at 426.799 kb on + strand at 426.815 kb on - strand at 426.828 kb on - strand at 426.828 kb on - strand at 426.869 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.881 kb on + strand at 426.882 kb on - strand at 427.176 kb on - strand, within HMPREF1078_RS01700 at 427.214 kb on + strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.244 kb on - strand, within HMPREF1078_RS01700 at 427.296 kb on + strand, within HMPREF1078_RS01700 at 427.512 kb on - strand at 427.531 kb on + strand at 427.531 kb on + strand at 427.531 kb on + strand at 427.532 kb on - strand at 427.533 kb on + strand at 427.533 kb on + strand at 427.536 kb on + strand at 427.549 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.576 kb on + strand at 427.577 kb on - strand at 427.592 kb on - strand at 427.596 kb on + strand at 427.606 kb on - strand at 427.627 kb on + strand at 427.627 kb on + strand at 427.627 kb on + strand at 427.647 kb on + strand at 427.647 kb on + strand at 427.680 kb on - strand, within HMPREF1078_RS01705 at 427.680 kb on - strand, within HMPREF1078_RS01705 at 427.878 kb on + strand, within HMPREF1078_RS01705 at 427.951 kb on + strand, within HMPREF1078_RS01705 at 427.957 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.020 kb on + strand, within HMPREF1078_RS01705 at 428.021 kb on - strand, within HMPREF1078_RS01705 at 428.021 kb on - strand, within HMPREF1078_RS01705 at 428.090 kb on + strand, within HMPREF1078_RS01705 at 428.168 kb on + strand, within HMPREF1078_RS01705 at 428.168 kb on + strand, within HMPREF1078_RS01705 at 428.168 kb on + strand, within HMPREF1078_RS01705 at 428.169 kb on - strand, within HMPREF1078_RS01705 at 428.169 kb on - strand, within HMPREF1078_RS01705 at 428.171 kb on - strand, within HMPREF1078_RS01705 at 428.205 kb on - strand, within HMPREF1078_RS01705 at 428.220 kb on + strand, within HMPREF1078_RS01705 at 428.283 kb on - strand, within HMPREF1078_RS01705 at 428.310 kb on + strand, within HMPREF1078_RS01705 at 428.321 kb on - strand, within HMPREF1078_RS01705
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 425,970 + HMPREF1078_RS01690 0.71 -1.3 425,977 + HMPREF1078_RS01690 0.71 -1.0 425,977 + HMPREF1078_RS01690 0.71 -0.3 425,979 + HMPREF1078_RS01690 0.72 -0.8 425,979 + HMPREF1078_RS01690 0.72 +0.5 425,980 - HMPREF1078_RS01690 0.72 -1.0 425,980 - HMPREF1078_RS01690 0.72 +0.3 425,982 - HMPREF1078_RS01690 0.72 -1.0 425,982 - HMPREF1078_RS01690 0.72 -0.5 425,982 - HMPREF1078_RS01690 0.72 -2.2 425,982 - HMPREF1078_RS01690 0.72 +0.3 426,081 + HMPREF1078_RS01690 0.78 -1.9 426,082 - HMPREF1078_RS01690 0.78 +0.3 426,103 + HMPREF1078_RS01690 0.80 -0.6 426,103 + HMPREF1078_RS01690 0.80 +0.7 426,104 - HMPREF1078_RS01690 0.80 -1.0 426,111 - HMPREF1078_RS01690 0.80 -2.3 426,126 + HMPREF1078_RS01690 0.81 +0.5 426,139 - HMPREF1078_RS01690 0.82 +1.3 426,156 + HMPREF1078_RS01690 0.83 +0.9 426,253 - HMPREF1078_RS01690 0.89 -1.5 426,277 - -0.3 426,315 + -1.2 426,326 - +0.3 426,327 + +2.1 426,327 + -2.3 426,327 + +0.3 426,328 - -0.3 426,513 + HMPREF1078_RS01695 0.16 +0.3 426,513 + HMPREF1078_RS01695 0.16 -1.5 426,514 - HMPREF1078_RS01695 0.16 -0.7 426,514 - HMPREF1078_RS01695 0.16 -0.3 426,514 - HMPREF1078_RS01695 0.16 -1.0 426,514 - HMPREF1078_RS01695 0.16 -2.0 426,515 + HMPREF1078_RS01695 0.16 +0.7 426,515 + HMPREF1078_RS01695 0.16 -1.5 426,515 + HMPREF1078_RS01695 0.16 +2.9 426,515 + HMPREF1078_RS01695 0.16 +2.6 426,515 + HMPREF1078_RS01695 0.16 +1.1 426,517 + HMPREF1078_RS01695 0.17 +0.4 426,517 + HMPREF1078_RS01695 0.17 -0.2 426,518 - HMPREF1078_RS01695 0.17 -2.2 426,518 - HMPREF1078_RS01695 0.17 -1.9 426,518 - HMPREF1078_RS01695 0.17 +1.3 426,522 + HMPREF1078_RS01695 0.18 +0.0 426,522 + HMPREF1078_RS01695 0.18 -0.3 426,522 + HMPREF1078_RS01695 0.18 -1.7 426,523 - HMPREF1078_RS01695 0.19 +0.7 426,525 + HMPREF1078_RS01695 0.19 -0.4 426,525 + HMPREF1078_RS01695 0.19 +2.8 426,526 - HMPREF1078_RS01695 0.19 -1.0 426,526 - HMPREF1078_RS01695 0.19 +1.3 426,527 + HMPREF1078_RS01695 0.20 -0.7 426,528 - HMPREF1078_RS01695 0.20 +0.3 426,632 - HMPREF1078_RS01695 0.48 +1.0 426,643 + HMPREF1078_RS01695 0.51 +0.4 426,646 + HMPREF1078_RS01695 0.52 +0.5 426,685 + HMPREF1078_RS01695 0.63 -0.7 426,685 + HMPREF1078_RS01695 0.63 +0.7 426,685 + HMPREF1078_RS01695 0.63 +1.4 426,685 + HMPREF1078_RS01695 0.63 -0.6 426,685 + HMPREF1078_RS01695 0.63 -0.7 426,685 + HMPREF1078_RS01695 0.63 -0.7 426,686 - HMPREF1078_RS01695 0.63 -1.9 426,686 - HMPREF1078_RS01695 0.63 -0.3 426,686 - HMPREF1078_RS01695 0.63 -1.3 426,738 + HMPREF1078_RS01695 0.77 -2.4 426,776 - HMPREF1078_RS01695 0.88 -1.5 426,799 + -1.0 426,815 - -0.3 426,828 - -0.3 426,828 - -0.7 426,869 + -0.7 426,876 + -1.7 426,876 + +0.1 426,876 + +3.4 426,876 + +2.3 426,881 + -0.9 426,882 - +0.3 427,176 - HMPREF1078_RS01700 0.49 -0.3 427,214 + HMPREF1078_RS01700 0.56 -2.2 427,215 - HMPREF1078_RS01700 0.56 +1.3 427,215 - HMPREF1078_RS01700 0.56 -1.5 427,243 + HMPREF1078_RS01700 0.61 -1.8 427,243 + HMPREF1078_RS01700 0.61 -3.0 427,244 - HMPREF1078_RS01700 0.61 -0.3 427,296 + HMPREF1078_RS01700 0.70 -2.0 427,512 - -0.3 427,531 + +3.6 427,531 + -1.9 427,531 + -1.2 427,532 - -1.3 427,533 + +1.1 427,533 + +1.4 427,536 + -0.7 427,549 + +1.2 427,576 + -0.5 427,576 + +0.3 427,576 + +0.7 427,576 + +0.3 427,576 + -0.1 427,576 + -0.7 427,577 - -0.3 427,592 - -2.8 427,596 + -0.3 427,606 - -0.3 427,627 + -1.5 427,627 + -0.1 427,627 + -0.4 427,647 + -2.0 427,647 + +0.6 427,680 - HMPREF1078_RS01705 0.11 -1.5 427,680 - HMPREF1078_RS01705 0.11 -1.0 427,878 + HMPREF1078_RS01705 0.33 +0.9 427,951 + HMPREF1078_RS01705 0.41 -1.5 427,957 + HMPREF1078_RS01705 0.41 -0.4 428,020 + HMPREF1078_RS01705 0.48 -0.7 428,020 + HMPREF1078_RS01705 0.48 -1.9 428,020 + HMPREF1078_RS01705 0.48 -1.5 428,020 + HMPREF1078_RS01705 0.48 +1.4 428,021 - HMPREF1078_RS01705 0.49 -1.9 428,021 - HMPREF1078_RS01705 0.49 -1.7 428,090 + HMPREF1078_RS01705 0.56 +0.6 428,168 + HMPREF1078_RS01705 0.65 -3.2 428,168 + HMPREF1078_RS01705 0.65 -1.3 428,168 + HMPREF1078_RS01705 0.65 -1.2 428,169 - HMPREF1078_RS01705 0.65 +1.3 428,169 - HMPREF1078_RS01705 0.65 -0.7 428,171 - HMPREF1078_RS01705 0.65 -0.3 428,205 - HMPREF1078_RS01705 0.69 +1.3 428,220 + HMPREF1078_RS01705 0.70 -1.0 428,283 - HMPREF1078_RS01705 0.77 +0.3 428,310 + HMPREF1078_RS01705 0.80 +1.0 428,321 - HMPREF1078_RS01705 0.82 -1.0
Or see this region's nucleotide sequence