Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00940 and HMPREF1078_RS00945 are separated by 1 nucleotides HMPREF1078_RS00945 and HMPREF1078_RS00950 are separated by 109 nucleotides
HMPREF1078_RS00940: HMPREF1078_RS00940 - hypothetical protein, at 230,369 to 230,959
_RS00940
HMPREF1078_RS00945: HMPREF1078_RS00945 - DUF2764 domain-containing protein, at 230,961 to 231,833
_RS00945
HMPREF1078_RS00950: HMPREF1078_RS00950 - V-type ATP synthase subunit A, at 231,943 to 233,700
_RS00950
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 229.964 kb on + strand at 230.017 kb on - strand at 230.126 kb on + strand at 230.129 kb on - strand at 230.133 kb on - strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.142 kb on - strand at 230.142 kb on - strand at 230.202 kb on + strand at 230.210 kb on - strand at 230.322 kb on + strand at 230.323 kb on - strand at 230.333 kb on + strand at 230.337 kb on + strand at 230.337 kb on + strand at 230.364 kb on + strand at 230.364 kb on + strand at 230.375 kb on - strand at 230.419 kb on - strand at 230.512 kb on + strand, within HMPREF1078_RS00940 at 230.595 kb on + strand, within HMPREF1078_RS00940 at 230.595 kb on + strand, within HMPREF1078_RS00940 at 230.683 kb on + strand, within HMPREF1078_RS00940 at 230.684 kb on - strand, within HMPREF1078_RS00940 at 230.879 kb on - strand, within HMPREF1078_RS00940 at 230.883 kb on + strand, within HMPREF1078_RS00940 at 230.883 kb on + strand, within HMPREF1078_RS00940 at 230.960 kb on + strand at 230.966 kb on + strand at 230.966 kb on + strand at 230.970 kb on + strand at 230.971 kb on - strand at 230.971 kb on - strand at 230.973 kb on + strand at 230.981 kb on - strand at 230.999 kb on + strand at 231.014 kb on + strand at 231.017 kb on + strand at 231.017 kb on + strand at 231.018 kb on - strand at 231.063 kb on - strand, within HMPREF1078_RS00945 at 231.064 kb on + strand, within HMPREF1078_RS00945 at 231.120 kb on - strand, within HMPREF1078_RS00945 at 231.176 kb on + strand, within HMPREF1078_RS00945 at 231.176 kb on + strand, within HMPREF1078_RS00945 at 231.176 kb on + strand, within HMPREF1078_RS00945 at 231.183 kb on + strand, within HMPREF1078_RS00945 at 231.183 kb on + strand, within HMPREF1078_RS00945 at 231.184 kb on - strand, within HMPREF1078_RS00945 at 231.184 kb on - strand, within HMPREF1078_RS00945 at 231.184 kb on - strand, within HMPREF1078_RS00945 at 231.204 kb on + strand, within HMPREF1078_RS00945 at 231.204 kb on + strand, within HMPREF1078_RS00945 at 231.205 kb on - strand, within HMPREF1078_RS00945 at 231.283 kb on - strand, within HMPREF1078_RS00945 at 231.348 kb on + strand, within HMPREF1078_RS00945 at 231.349 kb on - strand, within HMPREF1078_RS00945 at 231.349 kb on - strand, within HMPREF1078_RS00945 at 231.358 kb on - strand, within HMPREF1078_RS00945 at 231.423 kb on - strand, within HMPREF1078_RS00945 at 231.423 kb on - strand, within HMPREF1078_RS00945 at 231.435 kb on - strand, within HMPREF1078_RS00945 at 231.438 kb on - strand, within HMPREF1078_RS00945 at 231.474 kb on - strand, within HMPREF1078_RS00945 at 231.474 kb on - strand, within HMPREF1078_RS00945 at 231.494 kb on - strand, within HMPREF1078_RS00945 at 231.494 kb on - strand, within HMPREF1078_RS00945 at 231.494 kb on - strand, within HMPREF1078_RS00945 at 231.553 kb on - strand, within HMPREF1078_RS00945 at 231.553 kb on - strand, within HMPREF1078_RS00945 at 231.671 kb on - strand, within HMPREF1078_RS00945 at 231.680 kb on - strand, within HMPREF1078_RS00945 at 231.680 kb on - strand, within HMPREF1078_RS00945 at 231.688 kb on - strand, within HMPREF1078_RS00945 at 231.854 kb on + strand at 231.855 kb on - strand at 231.855 kb on - strand at 231.861 kb on - strand at 231.869 kb on - strand at 231.921 kb on - strand at 231.928 kb on - strand at 231.932 kb on - strand at 231.932 kb on - strand at 231.935 kb on + strand at 231.962 kb on + strand at 231.962 kb on + strand at 231.993 kb on - strand at 232.071 kb on + strand at 232.072 kb on - strand at 232.076 kb on + strand at 232.077 kb on - strand at 232.080 kb on - strand at 232.080 kb on - strand at 232.097 kb on + strand at 232.097 kb on + strand at 232.098 kb on - strand at 232.103 kb on + strand at 232.103 kb on + strand at 232.104 kb on - strand at 232.104 kb on - strand at 232.158 kb on + strand, within HMPREF1078_RS00950 at 232.158 kb on + strand, within HMPREF1078_RS00950 at 232.159 kb on - strand, within HMPREF1078_RS00950 at 232.159 kb on - strand, within HMPREF1078_RS00950 at 232.159 kb on - strand, within HMPREF1078_RS00950 at 232.169 kb on + strand, within HMPREF1078_RS00950 at 232.202 kb on - strand, within HMPREF1078_RS00950 at 232.228 kb on - strand, within HMPREF1078_RS00950 at 232.261 kb on + strand, within HMPREF1078_RS00950 at 232.262 kb on - strand, within HMPREF1078_RS00950 at 232.262 kb on - strand, within HMPREF1078_RS00950 at 232.263 kb on + strand, within HMPREF1078_RS00950 at 232.263 kb on + strand, within HMPREF1078_RS00950 at 232.263 kb on + strand, within HMPREF1078_RS00950 at 232.263 kb on + strand, within HMPREF1078_RS00950 at 232.264 kb on - strand, within HMPREF1078_RS00950 at 232.264 kb on - strand, within HMPREF1078_RS00950 at 232.264 kb on - strand, within HMPREF1078_RS00950 at 232.264 kb on - strand, within HMPREF1078_RS00950 at 232.264 kb on - strand, within HMPREF1078_RS00950 at 232.264 kb on - strand, within HMPREF1078_RS00950 at 232.264 kb on - strand, within HMPREF1078_RS00950 at 232.284 kb on + strand, within HMPREF1078_RS00950 at 232.284 kb on + strand, within HMPREF1078_RS00950 at 232.285 kb on - strand, within HMPREF1078_RS00950 at 232.411 kb on + strand, within HMPREF1078_RS00950 at 232.412 kb on - strand, within HMPREF1078_RS00950 at 232.413 kb on + strand, within HMPREF1078_RS00950 at 232.414 kb on - strand, within HMPREF1078_RS00950 at 232.444 kb on + strand, within HMPREF1078_RS00950 at 232.444 kb on + strand, within HMPREF1078_RS00950 at 232.445 kb on - strand, within HMPREF1078_RS00950 at 232.446 kb on + strand, within HMPREF1078_RS00950 at 232.446 kb on + strand, within HMPREF1078_RS00950 at 232.446 kb on + strand, within HMPREF1078_RS00950 at 232.446 kb on + strand, within HMPREF1078_RS00950 at 232.446 kb on + strand, within HMPREF1078_RS00950 at 232.447 kb on - strand, within HMPREF1078_RS00950 at 232.447 kb on - strand, within HMPREF1078_RS00950 at 232.447 kb on - strand, within HMPREF1078_RS00950 at 232.447 kb on - strand, within HMPREF1078_RS00950 at 232.447 kb on - strand, within HMPREF1078_RS00950 at 232.447 kb on - strand, within HMPREF1078_RS00950 at 232.451 kb on + strand, within HMPREF1078_RS00950 at 232.452 kb on - strand, within HMPREF1078_RS00950 at 232.511 kb on + strand, within HMPREF1078_RS00950 at 232.512 kb on - strand, within HMPREF1078_RS00950 at 232.567 kb on + strand, within HMPREF1078_RS00950 at 232.568 kb on - strand, within HMPREF1078_RS00950 at 232.569 kb on + strand, within HMPREF1078_RS00950 at 232.569 kb on + strand, within HMPREF1078_RS00950 at 232.570 kb on - strand, within HMPREF1078_RS00950 at 232.608 kb on - strand, within HMPREF1078_RS00950 at 232.629 kb on + strand, within HMPREF1078_RS00950 at 232.630 kb on - strand, within HMPREF1078_RS00950 at 232.708 kb on - strand, within HMPREF1078_RS00950 at 232.712 kb on + strand, within HMPREF1078_RS00950 at 232.713 kb on - strand, within HMPREF1078_RS00950 at 232.762 kb on - strand, within HMPREF1078_RS00950 at 232.800 kb on + strand, within HMPREF1078_RS00950 at 232.800 kb on + strand, within HMPREF1078_RS00950 at 232.815 kb on + strand, within HMPREF1078_RS00950 at 232.816 kb on - strand, within HMPREF1078_RS00950 at 232.816 kb on - strand, within HMPREF1078_RS00950 at 232.833 kb on + strand, within HMPREF1078_RS00950
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 229,964 + +2.9 230,017 - -0.6 230,126 + -3.6 230,129 - -2.2 230,133 - +1.3 230,141 + +1.5 230,141 + -2.3 230,141 + +1.7 230,141 + +2.2 230,142 - -0.1 230,142 - +1.3 230,202 + -1.4 230,210 - -0.5 230,322 + +0.3 230,323 - -1.5 230,333 + +1.3 230,337 + -0.2 230,337 + -2.4 230,364 + -0.3 230,364 + -2.2 230,375 - -1.3 230,419 - -1.8 230,512 + HMPREF1078_RS00940 0.24 -2.0 230,595 + HMPREF1078_RS00940 0.38 -2.4 230,595 + HMPREF1078_RS00940 0.38 -2.7 230,683 + HMPREF1078_RS00940 0.53 -2.2 230,684 - HMPREF1078_RS00940 0.53 +0.9 230,879 - HMPREF1078_RS00940 0.86 -0.3 230,883 + HMPREF1078_RS00940 0.87 -0.5 230,883 + HMPREF1078_RS00940 0.87 -0.3 230,960 + -0.7 230,966 + +0.3 230,966 + -1.0 230,970 + -1.0 230,971 - -2.7 230,971 - -1.9 230,973 + +0.3 230,981 - -0.9 230,999 + -1.7 231,014 + -2.3 231,017 + -1.3 231,017 + -1.9 231,018 - -0.3 231,063 - HMPREF1078_RS00945 0.12 -1.7 231,064 + HMPREF1078_RS00945 0.12 -0.7 231,120 - HMPREF1078_RS00945 0.18 -2.0 231,176 + HMPREF1078_RS00945 0.25 +0.3 231,176 + HMPREF1078_RS00945 0.25 -0.7 231,176 + HMPREF1078_RS00945 0.25 +0.3 231,183 + HMPREF1078_RS00945 0.25 -2.0 231,183 + HMPREF1078_RS00945 0.25 +1.3 231,184 - HMPREF1078_RS00945 0.26 +1.3 231,184 - HMPREF1078_RS00945 0.26 +0.3 231,184 - HMPREF1078_RS00945 0.26 -2.4 231,204 + HMPREF1078_RS00945 0.28 +1.3 231,204 + HMPREF1078_RS00945 0.28 -0.1 231,205 - HMPREF1078_RS00945 0.28 -2.4 231,283 - HMPREF1078_RS00945 0.37 +2.9 231,348 + HMPREF1078_RS00945 0.44 +0.3 231,349 - HMPREF1078_RS00945 0.44 -0.7 231,349 - HMPREF1078_RS00945 0.44 -1.8 231,358 - HMPREF1078_RS00945 0.45 -1.0 231,423 - HMPREF1078_RS00945 0.53 -1.0 231,423 - HMPREF1078_RS00945 0.53 -1.3 231,435 - HMPREF1078_RS00945 0.54 -1.0 231,438 - HMPREF1078_RS00945 0.55 -2.3 231,474 - HMPREF1078_RS00945 0.59 -0.8 231,474 - HMPREF1078_RS00945 0.59 -3.2 231,494 - HMPREF1078_RS00945 0.61 -2.4 231,494 - HMPREF1078_RS00945 0.61 -2.3 231,494 - HMPREF1078_RS00945 0.61 -0.6 231,553 - HMPREF1078_RS00945 0.68 -3.2 231,553 - HMPREF1078_RS00945 0.68 -1.5 231,671 - HMPREF1078_RS00945 0.81 -0.7 231,680 - HMPREF1078_RS00945 0.82 -2.5 231,680 - HMPREF1078_RS00945 0.82 -2.2 231,688 - HMPREF1078_RS00945 0.83 -1.7 231,854 + +1.3 231,855 - +2.3 231,855 - -1.9 231,861 - +1.3 231,869 - -1.3 231,921 - -2.0 231,928 - +0.1 231,932 - -0.7 231,932 - -2.7 231,935 + -1.5 231,962 + -2.5 231,962 + -1.5 231,993 - +1.3 232,071 + -0.6 232,072 - -2.3 232,076 + -0.1 232,077 - -2.5 232,080 - -1.3 232,080 - -1.2 232,097 + +1.3 232,097 + +0.5 232,098 - -1.0 232,103 + -1.3 232,103 + -2.9 232,104 - -0.3 232,104 - -2.7 232,158 + HMPREF1078_RS00950 0.12 -2.8 232,158 + HMPREF1078_RS00950 0.12 -1.3 232,159 - HMPREF1078_RS00950 0.12 -2.9 232,159 - HMPREF1078_RS00950 0.12 +0.3 232,159 - HMPREF1078_RS00950 0.12 -0.7 232,169 + HMPREF1078_RS00950 0.13 -1.0 232,202 - HMPREF1078_RS00950 0.15 -2.8 232,228 - HMPREF1078_RS00950 0.16 -2.0 232,261 + HMPREF1078_RS00950 0.18 +0.9 232,262 - HMPREF1078_RS00950 0.18 +1.3 232,262 - HMPREF1078_RS00950 0.18 -0.7 232,263 + HMPREF1078_RS00950 0.18 -2.8 232,263 + HMPREF1078_RS00950 0.18 +0.3 232,263 + HMPREF1078_RS00950 0.18 -2.9 232,263 + HMPREF1078_RS00950 0.18 +0.3 232,264 - HMPREF1078_RS00950 0.18 -0.7 232,264 - HMPREF1078_RS00950 0.18 +0.5 232,264 - HMPREF1078_RS00950 0.18 -1.3 232,264 - HMPREF1078_RS00950 0.18 +1.3 232,264 - HMPREF1078_RS00950 0.18 -0.7 232,264 - HMPREF1078_RS00950 0.18 -2.5 232,264 - HMPREF1078_RS00950 0.18 -2.6 232,284 + HMPREF1078_RS00950 0.19 -1.3 232,284 + HMPREF1078_RS00950 0.19 -1.3 232,285 - HMPREF1078_RS00950 0.19 -0.6 232,411 + HMPREF1078_RS00950 0.27 -1.0 232,412 - HMPREF1078_RS00950 0.27 -1.5 232,413 + HMPREF1078_RS00950 0.27 -1.4 232,414 - HMPREF1078_RS00950 0.27 -2.0 232,444 + HMPREF1078_RS00950 0.28 -0.3 232,444 + HMPREF1078_RS00950 0.28 -0.9 232,445 - HMPREF1078_RS00950 0.29 -0.7 232,446 + HMPREF1078_RS00950 0.29 +1.3 232,446 + HMPREF1078_RS00950 0.29 -2.3 232,446 + HMPREF1078_RS00950 0.29 -0.8 232,446 + HMPREF1078_RS00950 0.29 -3.0 232,446 + HMPREF1078_RS00950 0.29 -2.4 232,447 - HMPREF1078_RS00950 0.29 -2.0 232,447 - HMPREF1078_RS00950 0.29 -1.3 232,447 - HMPREF1078_RS00950 0.29 -2.8 232,447 - HMPREF1078_RS00950 0.29 -3.0 232,447 - HMPREF1078_RS00950 0.29 -1.0 232,447 - HMPREF1078_RS00950 0.29 -2.2 232,451 + HMPREF1078_RS00950 0.29 -1.2 232,452 - HMPREF1078_RS00950 0.29 -1.0 232,511 + HMPREF1078_RS00950 0.32 -2.4 232,512 - HMPREF1078_RS00950 0.32 -0.7 232,567 + HMPREF1078_RS00950 0.35 +0.0 232,568 - HMPREF1078_RS00950 0.36 -1.7 232,569 + HMPREF1078_RS00950 0.36 -1.3 232,569 + HMPREF1078_RS00950 0.36 -2.4 232,570 - HMPREF1078_RS00950 0.36 -1.0 232,608 - HMPREF1078_RS00950 0.38 -1.2 232,629 + HMPREF1078_RS00950 0.39 +0.3 232,630 - HMPREF1078_RS00950 0.39 -1.3 232,708 - HMPREF1078_RS00950 0.44 +1.3 232,712 + HMPREF1078_RS00950 0.44 +1.3 232,713 - HMPREF1078_RS00950 0.44 -1.3 232,762 - HMPREF1078_RS00950 0.47 +1.3 232,800 + HMPREF1078_RS00950 0.49 -2.4 232,800 + HMPREF1078_RS00950 0.49 -0.7 232,815 + HMPREF1078_RS00950 0.50 -2.2 232,816 - HMPREF1078_RS00950 0.50 -2.2 232,816 - HMPREF1078_RS00950 0.50 -1.6 232,833 + HMPREF1078_RS00950 0.51 -1.3
Or see this region's nucleotide sequence