Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00915 and HMPREF1078_RS00925 are separated by 481 nucleotides HMPREF1078_RS00925 and HMPREF1078_RS00930 are separated by 10 nucleotides
HMPREF1078_RS00915: HMPREF1078_RS00915 - GH92 family glycosyl hydrolase, at 224,272 to 226,572
_RS00915
HMPREF1078_RS00925: HMPREF1078_RS00925 - UpxY family transcription antiterminator, at 227,054 to 227,566
_RS00925
HMPREF1078_RS00930: HMPREF1078_RS00930 - cobyric acid synthase, at 227,577 to 229,100
_RS00930
Position (kb) 227
228 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 226.142 kb on - strand, within HMPREF1078_RS00915 at 226.142 kb on - strand, within HMPREF1078_RS00915 at 226.267 kb on - strand, within HMPREF1078_RS00915 at 226.309 kb on + strand, within HMPREF1078_RS00915 at 226.402 kb on - strand at 226.404 kb on + strand at 226.404 kb on + strand at 226.405 kb on - strand at 226.405 kb on - strand at 226.408 kb on + strand at 226.408 kb on + strand at 226.408 kb on + strand at 226.409 kb on - strand at 226.409 kb on - strand at 226.464 kb on + strand at 226.518 kb on + strand at 226.518 kb on + strand at 226.570 kb on + strand at 226.595 kb on + strand at 226.596 kb on - strand at 226.638 kb on + strand at 226.649 kb on + strand at 226.649 kb on + strand at 226.653 kb on + strand at 226.653 kb on + strand at 226.653 kb on + strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.654 kb on - strand at 226.655 kb on + strand at 226.656 kb on - strand at 226.668 kb on + strand at 226.669 kb on - strand at 226.678 kb on + strand at 226.678 kb on + strand at 226.678 kb on + strand at 226.679 kb on - strand at 226.688 kb on - strand at 226.733 kb on - strand at 226.765 kb on + strand at 226.766 kb on - strand at 226.812 kb on + strand at 226.813 kb on - strand at 226.848 kb on - strand at 226.849 kb on + strand at 226.850 kb on - strand at 226.850 kb on - strand at 226.852 kb on - strand at 226.863 kb on + strand at 226.863 kb on + strand at 226.863 kb on + strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.864 kb on - strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.867 kb on + strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.868 kb on - strand at 226.893 kb on + strand at 226.893 kb on + strand at 226.893 kb on + strand at 226.916 kb on + strand at 226.918 kb on + strand at 226.918 kb on + strand at 226.929 kb on - strand at 226.936 kb on + strand at 226.937 kb on - strand at 226.940 kb on + strand at 226.941 kb on + strand at 226.941 kb on - strand at 226.947 kb on - strand at 226.992 kb on + strand at 226.992 kb on + strand at 227.001 kb on - strand at 227.008 kb on - strand at 227.024 kb on - strand at 227.038 kb on + strand at 227.038 kb on + strand at 227.039 kb on - strand at 227.039 kb on - strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.048 kb on + strand at 227.049 kb on - strand at 227.049 kb on - strand at 227.099 kb on + strand at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.108 kb on + strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.109 kb on - strand, within HMPREF1078_RS00925 at 227.235 kb on + strand, within HMPREF1078_RS00925 at 227.235 kb on + strand, within HMPREF1078_RS00925 at 227.236 kb on - strand, within HMPREF1078_RS00925 at 227.236 kb on - strand, within HMPREF1078_RS00925 at 227.239 kb on + strand, within HMPREF1078_RS00925 at 227.239 kb on + strand, within HMPREF1078_RS00925 at 227.240 kb on - strand, within HMPREF1078_RS00925 at 227.240 kb on - strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.246 kb on + strand, within HMPREF1078_RS00925 at 227.247 kb on - strand, within HMPREF1078_RS00925 at 227.256 kb on + strand, within HMPREF1078_RS00925 at 227.263 kb on + strand, within HMPREF1078_RS00925 at 227.264 kb on - strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.297 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.321 kb on + strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.322 kb on - strand, within HMPREF1078_RS00925 at 227.464 kb on - strand, within HMPREF1078_RS00925 at 227.488 kb on - strand, within HMPREF1078_RS00925 at 227.488 kb on - strand, within HMPREF1078_RS00925 at 227.496 kb on - strand, within HMPREF1078_RS00925 at 227.496 kb on - strand, within HMPREF1078_RS00925 at 227.508 kb on + strand, within HMPREF1078_RS00925 at 227.516 kb on - strand at 227.516 kb on - strand at 227.532 kb on + strand at 227.533 kb on - strand at 227.564 kb on + strand at 227.564 kb on + strand at 227.565 kb on - strand at 227.565 kb on - strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.597 kb on + strand at 227.598 kb on - strand at 227.599 kb on + strand at 227.599 kb on + strand at 227.599 kb on + strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.600 kb on - strand at 227.626 kb on - strand at 227.645 kb on - strand at 227.742 kb on + strand, within HMPREF1078_RS00930 at 227.753 kb on + strand, within HMPREF1078_RS00930 at 227.753 kb on + strand, within HMPREF1078_RS00930 at 227.755 kb on + strand, within HMPREF1078_RS00930 at 227.755 kb on + strand, within HMPREF1078_RS00930 at 227.756 kb on - strand, within HMPREF1078_RS00930 at 227.782 kb on + strand, within HMPREF1078_RS00930 at 227.865 kb on + strand, within HMPREF1078_RS00930 at 227.865 kb on + strand, within HMPREF1078_RS00930 at 227.866 kb on - strand, within HMPREF1078_RS00930 at 227.990 kb on + strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 227.991 kb on - strand, within HMPREF1078_RS00930 at 228.143 kb on + strand, within HMPREF1078_RS00930 at 228.207 kb on - strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.239 kb on + strand, within HMPREF1078_RS00930 at 228.242 kb on - strand, within HMPREF1078_RS00930 at 228.244 kb on + strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.274 kb on - strand, within HMPREF1078_RS00930 at 228.293 kb on + strand, within HMPREF1078_RS00930 at 228.343 kb on + strand, within HMPREF1078_RS00930 at 228.347 kb on + strand, within HMPREF1078_RS00930 at 228.420 kb on + strand, within HMPREF1078_RS00930 at 228.500 kb on + strand, within HMPREF1078_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 226,142 - HMPREF1078_RS00915 0.81 -0.9 226,142 - HMPREF1078_RS00915 0.81 -1.3 226,267 - HMPREF1078_RS00915 0.87 +0.2 226,309 + HMPREF1078_RS00915 0.89 -2.4 226,402 - -2.2 226,404 + -0.7 226,404 + +0.2 226,405 - -1.5 226,405 - -0.3 226,408 + -1.0 226,408 + +1.0 226,408 + +1.6 226,409 - -1.7 226,409 - -0.3 226,464 + +1.0 226,518 + -0.3 226,518 + +1.1 226,570 + -0.3 226,595 + +0.4 226,596 - +0.5 226,638 + +1.5 226,649 + -1.5 226,649 + +1.1 226,653 + -3.5 226,653 + +0.2 226,653 + -0.3 226,654 - -0.0 226,654 - +0.4 226,654 - +0.3 226,654 - +0.3 226,654 - -1.2 226,655 + -0.7 226,656 - -1.6 226,668 + +0.6 226,669 - -0.2 226,678 + +0.9 226,678 + +0.5 226,678 + +0.1 226,679 - +0.0 226,688 - -0.7 226,733 - -0.9 226,765 + +1.6 226,766 - +1.1 226,812 + +0.0 226,813 - -1.4 226,848 - +0.8 226,849 + -1.5 226,850 - -3.8 226,850 - +1.2 226,852 - -1.7 226,863 + -0.2 226,863 + +0.1 226,863 + +0.7 226,864 - +0.8 226,864 - -2.4 226,864 - -0.3 226,864 - +0.3 226,867 + +0.9 226,867 + -1.9 226,867 + -3.0 226,867 + -0.0 226,867 + -0.0 226,867 + +0.4 226,867 + +1.0 226,867 + -0.3 226,867 + -1.9 226,868 - +1.7 226,868 - +0.3 226,868 - -0.3 226,868 - -0.9 226,868 - +0.7 226,868 - +0.3 226,868 - +0.4 226,868 - -0.3 226,893 + +0.1 226,893 + -1.5 226,893 + -1.9 226,916 + -0.4 226,918 + -0.5 226,918 + -2.4 226,929 - -0.7 226,936 + -0.8 226,937 - +2.3 226,940 + -1.1 226,941 + -1.8 226,941 - -1.6 226,947 - +0.7 226,992 + +0.6 226,992 + -2.0 227,001 - -1.8 227,008 - +0.0 227,024 - -0.4 227,038 + +0.5 227,038 + +0.3 227,039 - -5.3 227,039 - -4.2 227,048 + +0.3 227,048 + -0.7 227,048 + -0.0 227,048 + -1.3 227,049 - -1.0 227,049 - -1.5 227,099 + -3.6 227,108 + HMPREF1078_RS00925 0.11 -2.4 227,108 + HMPREF1078_RS00925 0.11 +1.3 227,108 + HMPREF1078_RS00925 0.11 -1.7 227,108 + HMPREF1078_RS00925 0.11 -3.7 227,109 - HMPREF1078_RS00925 0.11 -1.0 227,109 - HMPREF1078_RS00925 0.11 -3.3 227,109 - HMPREF1078_RS00925 0.11 -1.5 227,235 + HMPREF1078_RS00925 0.35 -3.9 227,235 + HMPREF1078_RS00925 0.35 -3.2 227,236 - HMPREF1078_RS00925 0.35 -3.5 227,236 - HMPREF1078_RS00925 0.35 -3.6 227,239 + HMPREF1078_RS00925 0.36 -5.8 227,239 + HMPREF1078_RS00925 0.36 -4.1 227,240 - HMPREF1078_RS00925 0.36 -4.5 227,240 - HMPREF1078_RS00925 0.36 -1.7 227,246 + HMPREF1078_RS00925 0.37 -0.3 227,246 + HMPREF1078_RS00925 0.37 -1.0 227,246 + HMPREF1078_RS00925 0.37 -3.4 227,247 - HMPREF1078_RS00925 0.38 -4.2 227,256 + HMPREF1078_RS00925 0.39 -2.7 227,263 + HMPREF1078_RS00925 0.41 -3.4 227,264 - HMPREF1078_RS00925 0.41 -3.0 227,297 + HMPREF1078_RS00925 0.47 -4.2 227,297 + HMPREF1078_RS00925 0.47 -2.9 227,297 + HMPREF1078_RS00925 0.47 -0.7 227,297 + HMPREF1078_RS00925 0.47 -3.8 227,321 + HMPREF1078_RS00925 0.52 -2.2 227,321 + HMPREF1078_RS00925 0.52 -4.5 227,321 + HMPREF1078_RS00925 0.52 -2.0 227,322 - HMPREF1078_RS00925 0.52 +0.3 227,322 - HMPREF1078_RS00925 0.52 -3.1 227,322 - HMPREF1078_RS00925 0.52 -4.1 227,464 - HMPREF1078_RS00925 0.80 -3.2 227,488 - HMPREF1078_RS00925 0.85 -3.6 227,488 - HMPREF1078_RS00925 0.85 -2.6 227,496 - HMPREF1078_RS00925 0.86 -3.1 227,496 - HMPREF1078_RS00925 0.86 -3.6 227,508 + HMPREF1078_RS00925 0.88 -3.1 227,516 - -2.3 227,516 - -3.4 227,532 + -4.1 227,533 - -3.6 227,564 + +0.1 227,564 + -0.7 227,565 - -0.7 227,565 - +0.2 227,597 + -1.3 227,597 + -0.0 227,597 + +1.3 227,597 + +1.3 227,597 + -0.3 227,597 + +0.4 227,597 + +0.3 227,597 + +2.3 227,598 - +0.3 227,599 + -2.4 227,599 + -0.0 227,599 + -0.1 227,600 - +1.3 227,600 - +0.5 227,600 - +0.3 227,600 - -0.1 227,600 - -0.3 227,626 - -0.7 227,645 - +0.9 227,742 + HMPREF1078_RS00930 0.11 -0.3 227,753 + HMPREF1078_RS00930 0.12 -2.2 227,753 + HMPREF1078_RS00930 0.12 +0.3 227,755 + HMPREF1078_RS00930 0.12 -0.7 227,755 + HMPREF1078_RS00930 0.12 +1.3 227,756 - HMPREF1078_RS00930 0.12 +0.3 227,782 + HMPREF1078_RS00930 0.13 -1.2 227,865 + HMPREF1078_RS00930 0.19 -0.3 227,865 + HMPREF1078_RS00930 0.19 +3.6 227,866 - HMPREF1078_RS00930 0.19 +0.3 227,990 + HMPREF1078_RS00930 0.27 -1.5 227,991 - HMPREF1078_RS00930 0.27 +0.3 227,991 - HMPREF1078_RS00930 0.27 +1.3 227,991 - HMPREF1078_RS00930 0.27 +1.3 228,143 + HMPREF1078_RS00930 0.37 +0.3 228,207 - HMPREF1078_RS00930 0.41 +0.1 228,239 + HMPREF1078_RS00930 0.43 -0.1 228,239 + HMPREF1078_RS00930 0.43 -1.3 228,242 - HMPREF1078_RS00930 0.44 +2.3 228,244 + HMPREF1078_RS00930 0.44 -0.3 228,274 - HMPREF1078_RS00930 0.46 +1.3 228,274 - HMPREF1078_RS00930 0.46 -1.9 228,274 - HMPREF1078_RS00930 0.46 +0.3 228,293 + HMPREF1078_RS00930 0.47 -1.3 228,343 + HMPREF1078_RS00930 0.50 +1.8 228,347 + HMPREF1078_RS00930 0.51 +0.3 228,420 + HMPREF1078_RS00930 0.55 -1.3 228,500 + HMPREF1078_RS00930 0.61 +0.3
Or see this region's nucleotide sequence