Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00675 and HMPREF1078_RS00680 are separated by 120 nucleotides HMPREF1078_RS00680 and HMPREF1078_RS00685 overlap by 10 nucleotides HMPREF1078_RS00685 and HMPREF1078_RS00690 are separated by 80 nucleotides HMPREF1078_RS00690 and HMPREF1078_RS00695 are separated by 36 nucleotides
HMPREF1078_RS00675: HMPREF1078_RS00675 - SGNH/GDSL hydrolase family protein, at 157,386 to 159,137
_RS00675
HMPREF1078_RS00680: HMPREF1078_RS00680 - glycoside hydrolase family 97 protein, at 159,258 to 161,246
_RS00680
HMPREF1078_RS00685: HMPREF1078_RS00685 - MBL fold metallo-hydrolase, at 161,237 to 162,043
_RS00685
HMPREF1078_RS00690: HMPREF1078_RS00690 - tRNA-Cys, at 162,124 to 162,195
_RS00690
HMPREF1078_RS00695: HMPREF1078_RS00695 - tRNA-Cys, at 162,232 to 162,303
_RS00695
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.282 kb on + strand, within HMPREF1078_RS00675 at 158.409 kb on + strand, within HMPREF1078_RS00675 at 158.409 kb on + strand, within HMPREF1078_RS00675 at 158.413 kb on + strand, within HMPREF1078_RS00675 at 158.413 kb on + strand, within HMPREF1078_RS00675 at 158.672 kb on - strand, within HMPREF1078_RS00675 at 158.674 kb on - strand, within HMPREF1078_RS00675 at 158.733 kb on - strand, within HMPREF1078_RS00675 at 158.733 kb on - strand, within HMPREF1078_RS00675 at 158.736 kb on - strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.738 kb on - strand, within HMPREF1078_RS00675 at 158.738 kb on - strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.742 kb on - strand, within HMPREF1078_RS00675 at 158.744 kb on - strand, within HMPREF1078_RS00675 at 158.804 kb on + strand, within HMPREF1078_RS00675 at 158.805 kb on - strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.859 kb on - strand, within HMPREF1078_RS00675 at 158.903 kb on + strand, within HMPREF1078_RS00675 at 158.999 kb on - strand at 159.118 kb on - strand at 159.142 kb on - strand at 159.142 kb on - strand at 159.144 kb on + strand at 159.144 kb on + strand at 159.144 kb on + strand at 159.153 kb on - strand at 159.161 kb on + strand at 159.162 kb on - strand at 159.164 kb on + strand at 159.170 kb on - strand at 159.174 kb on + strand at 159.175 kb on - strand at 159.186 kb on + strand at 159.187 kb on - strand at 159.217 kb on - strand at 159.226 kb on + strand at 159.276 kb on - strand at 159.276 kb on - strand at 159.395 kb on + strand at 159.463 kb on + strand, within HMPREF1078_RS00680 at 159.531 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.555 kb on - strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.559 kb on - strand, within HMPREF1078_RS00680 at 159.592 kb on - strand, within HMPREF1078_RS00680 at 159.608 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.660 kb on - strand, within HMPREF1078_RS00680 at 159.723 kb on + strand, within HMPREF1078_RS00680 at 159.743 kb on + strand, within HMPREF1078_RS00680 at 159.783 kb on + strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.872 kb on + strand, within HMPREF1078_RS00680 at 159.917 kb on + strand, within HMPREF1078_RS00680 at 159.917 kb on + strand, within HMPREF1078_RS00680 at 159.961 kb on - strand, within HMPREF1078_RS00680 at 159.992 kb on + strand, within HMPREF1078_RS00680 at 160.006 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.120 kb on - strand, within HMPREF1078_RS00680 at 160.120 kb on - strand, within HMPREF1078_RS00680 at 160.210 kb on - strand, within HMPREF1078_RS00680 at 160.210 kb on - strand, within HMPREF1078_RS00680 at 160.233 kb on - strand, within HMPREF1078_RS00680 at 160.251 kb on - strand, within HMPREF1078_RS00680 at 160.254 kb on + strand, within HMPREF1078_RS00680 at 160.254 kb on + strand, within HMPREF1078_RS00680 at 160.254 kb on + strand, within HMPREF1078_RS00680 at 160.255 kb on - strand, within HMPREF1078_RS00680 at 160.255 kb on - strand, within HMPREF1078_RS00680 at 160.255 kb on - strand, within HMPREF1078_RS00680 at 160.323 kb on - strand, within HMPREF1078_RS00680 at 160.381 kb on - strand, within HMPREF1078_RS00680 at 160.593 kb on - strand, within HMPREF1078_RS00680 at 160.623 kb on + strand, within HMPREF1078_RS00680 at 160.642 kb on - strand, within HMPREF1078_RS00680 at 160.685 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.690 kb on - strand, within HMPREF1078_RS00680 at 160.690 kb on - strand, within HMPREF1078_RS00680 at 160.755 kb on - strand, within HMPREF1078_RS00680 at 160.803 kb on + strand, within HMPREF1078_RS00680 at 160.804 kb on - strand, within HMPREF1078_RS00680 at 160.805 kb on + strand, within HMPREF1078_RS00680 at 160.847 kb on + strand, within HMPREF1078_RS00680 at 160.847 kb on + strand, within HMPREF1078_RS00680 at 160.848 kb on - strand, within HMPREF1078_RS00680 at 160.851 kb on + strand, within HMPREF1078_RS00680 at 160.852 kb on - strand, within HMPREF1078_RS00680 at 160.852 kb on - strand, within HMPREF1078_RS00680 at 160.922 kb on + strand, within HMPREF1078_RS00680 at 160.952 kb on - strand, within HMPREF1078_RS00680 at 160.979 kb on + strand, within HMPREF1078_RS00680 at 161.171 kb on - strand at 161.171 kb on - strand at 161.244 kb on + strand at 161.244 kb on + strand at 161.245 kb on - strand at 161.251 kb on + strand at 161.308 kb on - strand at 161.315 kb on + strand at 161.315 kb on + strand at 161.324 kb on - strand, within HMPREF1078_RS00685 at 161.367 kb on + strand, within HMPREF1078_RS00685 at 161.367 kb on + strand, within HMPREF1078_RS00685 at 161.440 kb on + strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.517 kb on + strand, within HMPREF1078_RS00685 at 161.666 kb on - strand, within HMPREF1078_RS00685 at 161.782 kb on + strand, within HMPREF1078_RS00685 at 161.798 kb on - strand, within HMPREF1078_RS00685 at 161.830 kb on + strand, within HMPREF1078_RS00685 at 161.831 kb on - strand, within HMPREF1078_RS00685 at 161.831 kb on - strand, within HMPREF1078_RS00685 at 161.831 kb on - strand, within HMPREF1078_RS00685 at 161.840 kb on - strand, within HMPREF1078_RS00685 at 161.840 kb on - strand, within HMPREF1078_RS00685 at 161.912 kb on + strand, within HMPREF1078_RS00685 at 161.912 kb on + strand, within HMPREF1078_RS00685 at 161.913 kb on - strand, within HMPREF1078_RS00685 at 161.913 kb on - strand, within HMPREF1078_RS00685 at 161.945 kb on - strand, within HMPREF1078_RS00685 at 161.990 kb on + strand at 161.991 kb on - strand at 162.004 kb on - strand at 162.050 kb on - strand at 162.108 kb on + strand at 162.109 kb on - strand at 162.109 kb on - strand at 162.150 kb on + strand, within HMPREF1078_RS00690 at 162.150 kb on + strand, within HMPREF1078_RS00690 at 162.174 kb on + strand, within HMPREF1078_RS00690 at 162.175 kb on - strand, within HMPREF1078_RS00690 at 162.201 kb on - strand at 162.201 kb on - strand at 162.226 kb on + strand at 162.226 kb on + strand at 162.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 158,277 - HMPREF1078_RS00675 0.51 -0.2 158,277 - HMPREF1078_RS00675 0.51 -0.7 158,277 - HMPREF1078_RS00675 0.51 -0.6 158,282 + HMPREF1078_RS00675 0.51 -1.0 158,409 + HMPREF1078_RS00675 0.58 -1.9 158,409 + HMPREF1078_RS00675 0.58 -2.6 158,413 + HMPREF1078_RS00675 0.59 +0.5 158,413 + HMPREF1078_RS00675 0.59 -1.0 158,672 - HMPREF1078_RS00675 0.73 +1.9 158,674 - HMPREF1078_RS00675 0.74 -2.4 158,733 - HMPREF1078_RS00675 0.77 -2.4 158,733 - HMPREF1078_RS00675 0.77 +2.9 158,736 - HMPREF1078_RS00675 0.77 +0.9 158,737 + HMPREF1078_RS00675 0.77 +2.4 158,737 + HMPREF1078_RS00675 0.77 +0.1 158,737 + HMPREF1078_RS00675 0.77 -1.2 158,737 + HMPREF1078_RS00675 0.77 +2.1 158,738 - HMPREF1078_RS00675 0.77 +0.5 158,738 - HMPREF1078_RS00675 0.77 -0.5 158,741 + HMPREF1078_RS00675 0.77 -2.3 158,741 + HMPREF1078_RS00675 0.77 +1.1 158,741 + HMPREF1078_RS00675 0.77 +0.1 158,741 + HMPREF1078_RS00675 0.77 -1.5 158,742 - HMPREF1078_RS00675 0.77 -0.7 158,744 - HMPREF1078_RS00675 0.78 -1.3 158,804 + HMPREF1078_RS00675 0.81 +0.7 158,805 - HMPREF1078_RS00675 0.81 -1.2 158,846 + HMPREF1078_RS00675 0.83 +1.3 158,846 + HMPREF1078_RS00675 0.83 -0.2 158,846 + HMPREF1078_RS00675 0.83 -1.0 158,847 - HMPREF1078_RS00675 0.83 -0.8 158,847 - HMPREF1078_RS00675 0.83 -1.0 158,847 - HMPREF1078_RS00675 0.83 +1.3 158,859 - HMPREF1078_RS00675 0.84 +0.4 158,903 + HMPREF1078_RS00675 0.87 +0.3 158,999 - -1.7 159,118 - -2.4 159,142 - -0.7 159,142 - -0.3 159,144 + -1.9 159,144 + -1.5 159,144 + +0.1 159,153 - -2.5 159,161 + -0.4 159,162 - -1.3 159,164 + -0.7 159,170 - -0.3 159,174 + -0.5 159,175 - -3.2 159,186 + -2.4 159,187 - -2.7 159,217 - -1.7 159,226 + -3.5 159,276 - -2.7 159,276 - -0.7 159,395 + -2.8 159,463 + HMPREF1078_RS00680 0.10 +1.3 159,531 + HMPREF1078_RS00680 0.14 -2.5 159,554 + HMPREF1078_RS00680 0.15 -1.1 159,554 + HMPREF1078_RS00680 0.15 -3.7 159,554 + HMPREF1078_RS00680 0.15 -0.5 159,555 - HMPREF1078_RS00680 0.15 -2.3 159,558 + HMPREF1078_RS00680 0.15 -1.0 159,558 + HMPREF1078_RS00680 0.15 -1.5 159,558 + HMPREF1078_RS00680 0.15 -3.1 159,559 - HMPREF1078_RS00680 0.15 -2.2 159,592 - HMPREF1078_RS00680 0.17 -1.8 159,608 + HMPREF1078_RS00680 0.18 -2.3 159,612 + HMPREF1078_RS00680 0.18 -3.4 159,612 + HMPREF1078_RS00680 0.18 -1.0 159,612 + HMPREF1078_RS00680 0.18 -0.7 159,612 + HMPREF1078_RS00680 0.18 -2.5 159,612 + HMPREF1078_RS00680 0.18 -0.0 159,613 - HMPREF1078_RS00680 0.18 -2.4 159,613 - HMPREF1078_RS00680 0.18 -1.5 159,613 - HMPREF1078_RS00680 0.18 -2.6 159,660 - HMPREF1078_RS00680 0.20 -2.0 159,723 + HMPREF1078_RS00680 0.23 +1.3 159,743 + HMPREF1078_RS00680 0.24 -3.1 159,783 + HMPREF1078_RS00680 0.26 -2.9 159,784 - HMPREF1078_RS00680 0.26 -1.9 159,784 - HMPREF1078_RS00680 0.26 -2.7 159,784 - HMPREF1078_RS00680 0.26 -0.1 159,787 + HMPREF1078_RS00680 0.27 -3.0 159,787 + HMPREF1078_RS00680 0.27 -1.3 159,787 + HMPREF1078_RS00680 0.27 -1.2 159,788 - HMPREF1078_RS00680 0.27 -2.8 159,788 - HMPREF1078_RS00680 0.27 +0.7 159,788 - HMPREF1078_RS00680 0.27 -1.0 159,872 + HMPREF1078_RS00680 0.31 -3.5 159,917 + HMPREF1078_RS00680 0.33 -2.5 159,917 + HMPREF1078_RS00680 0.33 -0.0 159,961 - HMPREF1078_RS00680 0.35 -1.3 159,992 + HMPREF1078_RS00680 0.37 -0.9 160,006 + HMPREF1078_RS00680 0.38 -1.8 160,030 + HMPREF1078_RS00680 0.39 -3.4 160,030 + HMPREF1078_RS00680 0.39 -3.5 160,030 + HMPREF1078_RS00680 0.39 -3.9 160,120 - HMPREF1078_RS00680 0.43 -0.9 160,120 - HMPREF1078_RS00680 0.43 -2.3 160,210 - HMPREF1078_RS00680 0.48 -1.8 160,210 - HMPREF1078_RS00680 0.48 -1.7 160,233 - HMPREF1078_RS00680 0.49 -1.1 160,251 - HMPREF1078_RS00680 0.50 +1.3 160,254 + HMPREF1078_RS00680 0.50 -1.5 160,254 + HMPREF1078_RS00680 0.50 -2.1 160,254 + HMPREF1078_RS00680 0.50 -1.3 160,255 - HMPREF1078_RS00680 0.50 -2.2 160,255 - HMPREF1078_RS00680 0.50 -0.7 160,255 - HMPREF1078_RS00680 0.50 -2.8 160,323 - HMPREF1078_RS00680 0.54 -1.9 160,381 - HMPREF1078_RS00680 0.56 -2.5 160,593 - HMPREF1078_RS00680 0.67 -1.7 160,623 + HMPREF1078_RS00680 0.69 +0.3 160,642 - HMPREF1078_RS00680 0.70 -1.0 160,685 + HMPREF1078_RS00680 0.72 -3.3 160,689 + HMPREF1078_RS00680 0.72 -2.2 160,689 + HMPREF1078_RS00680 0.72 +0.7 160,689 + HMPREF1078_RS00680 0.72 -2.6 160,689 + HMPREF1078_RS00680 0.72 -0.3 160,690 - HMPREF1078_RS00680 0.72 -0.1 160,690 - HMPREF1078_RS00680 0.72 +0.3 160,755 - HMPREF1078_RS00680 0.75 -1.0 160,803 + HMPREF1078_RS00680 0.78 +1.3 160,804 - HMPREF1078_RS00680 0.78 -1.2 160,805 + HMPREF1078_RS00680 0.78 -1.9 160,847 + HMPREF1078_RS00680 0.80 -1.4 160,847 + HMPREF1078_RS00680 0.80 -3.2 160,848 - HMPREF1078_RS00680 0.80 -1.2 160,851 + HMPREF1078_RS00680 0.80 -1.3 160,852 - HMPREF1078_RS00680 0.80 -1.5 160,852 - HMPREF1078_RS00680 0.80 +0.3 160,922 + HMPREF1078_RS00680 0.84 -1.2 160,952 - HMPREF1078_RS00680 0.85 -1.0 160,979 + HMPREF1078_RS00680 0.87 -2.3 161,171 - -1.0 161,171 - +0.3 161,244 + -0.2 161,244 + -2.0 161,245 - -0.8 161,251 + +0.1 161,308 - -1.9 161,315 + +0.5 161,315 + -0.6 161,324 - HMPREF1078_RS00685 0.11 -2.1 161,367 + HMPREF1078_RS00685 0.16 -1.5 161,367 + HMPREF1078_RS00685 0.16 +1.7 161,440 + HMPREF1078_RS00685 0.25 +2.5 161,441 - HMPREF1078_RS00685 0.25 -0.6 161,441 - HMPREF1078_RS00685 0.25 -1.3 161,441 - HMPREF1078_RS00685 0.25 -0.3 161,441 - HMPREF1078_RS00685 0.25 -1.2 161,517 + HMPREF1078_RS00685 0.35 -0.6 161,666 - HMPREF1078_RS00685 0.53 +1.9 161,782 + HMPREF1078_RS00685 0.68 +1.4 161,798 - HMPREF1078_RS00685 0.70 +0.3 161,830 + HMPREF1078_RS00685 0.73 -0.0 161,831 - HMPREF1078_RS00685 0.74 +1.9 161,831 - HMPREF1078_RS00685 0.74 +0.3 161,831 - HMPREF1078_RS00685 0.74 +0.4 161,840 - HMPREF1078_RS00685 0.75 -0.6 161,840 - HMPREF1078_RS00685 0.75 -1.4 161,912 + HMPREF1078_RS00685 0.84 +1.1 161,912 + HMPREF1078_RS00685 0.84 -1.0 161,913 - HMPREF1078_RS00685 0.84 +1.3 161,913 - HMPREF1078_RS00685 0.84 +0.3 161,945 - HMPREF1078_RS00685 0.88 +1.2 161,990 + +1.3 161,991 - -0.3 162,004 - -1.2 162,050 - +0.6 162,108 + -1.6 162,109 - -2.7 162,109 - +0.4 162,150 + HMPREF1078_RS00690 0.36 -0.3 162,150 + HMPREF1078_RS00690 0.36 +0.0 162,174 + HMPREF1078_RS00690 0.69 +2.9 162,175 - HMPREF1078_RS00690 0.71 +1.1 162,201 - -3.9 162,201 - +0.2 162,226 + -2.0 162,226 + +0.3 162,227 - +0.8
Or see this region's nucleotide sequence