Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00080 and HMPREF1078_RS00085 are separated by 14 nucleotides HMPREF1078_RS00085 and HMPREF1078_RS00090 are separated by 7 nucleotides HMPREF1078_RS00090 and HMPREF1078_RS00095 are separated by 72 nucleotides
HMPREF1078_RS00080: HMPREF1078_RS00080 - polysaccharide deacetylase family protein, at 19,224 to 20,540
_RS00080
HMPREF1078_RS00085: HMPREF1078_RS00085 - PIG-L family deacetylase, at 20,555 to 21,193
_RS00085
HMPREF1078_RS00090: HMPREF1078_RS00090 - GNAT family N-acetyltransferase, at 21,201 to 22,160
_RS00090
HMPREF1078_RS00095: HMPREF1078_RS00095 - recombinase RecA, at 22,233 to 23,276
_RS00095
Position (kb) 21
22
23 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 20.212 kb on - strand, within HMPREF1078_RS00080 at 20.270 kb on + strand, within HMPREF1078_RS00080 at 20.273 kb on - strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.280 kb on + strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.281 kb on - strand, within HMPREF1078_RS00080 at 20.308 kb on - strand, within HMPREF1078_RS00080 at 20.334 kb on + strand, within HMPREF1078_RS00080 at 20.334 kb on + strand, within HMPREF1078_RS00080 at 20.343 kb on + strand, within HMPREF1078_RS00080 at 20.344 kb on - strand, within HMPREF1078_RS00080 at 20.358 kb on + strand, within HMPREF1078_RS00080 at 20.359 kb on - strand, within HMPREF1078_RS00080 at 20.359 kb on - strand, within HMPREF1078_RS00080 at 20.432 kb on - strand at 20.481 kb on + strand at 20.482 kb on - strand at 20.482 kb on - strand at 20.522 kb on - strand at 20.522 kb on - strand at 20.540 kb on + strand at 20.540 kb on + strand at 20.540 kb on + strand at 20.540 kb on + strand at 20.556 kb on + strand at 20.573 kb on + strand at 20.574 kb on - strand at 20.638 kb on + strand, within HMPREF1078_RS00085 at 20.656 kb on - strand, within HMPREF1078_RS00085 at 20.656 kb on - strand, within HMPREF1078_RS00085 at 20.680 kb on - strand, within HMPREF1078_RS00085 at 20.680 kb on - strand, within HMPREF1078_RS00085 at 20.680 kb on - strand, within HMPREF1078_RS00085 at 20.719 kb on + strand, within HMPREF1078_RS00085 at 20.719 kb on + strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.831 kb on - strand, within HMPREF1078_RS00085 at 20.852 kb on + strand, within HMPREF1078_RS00085 at 20.853 kb on - strand, within HMPREF1078_RS00085 at 20.932 kb on - strand, within HMPREF1078_RS00085 at 20.932 kb on - strand, within HMPREF1078_RS00085 at 20.941 kb on + strand, within HMPREF1078_RS00085 at 20.953 kb on - strand, within HMPREF1078_RS00085 at 20.953 kb on - strand, within HMPREF1078_RS00085 at 20.958 kb on + strand, within HMPREF1078_RS00085 at 20.958 kb on + strand, within HMPREF1078_RS00085 at 20.959 kb on - strand, within HMPREF1078_RS00085 at 20.959 kb on - strand, within HMPREF1078_RS00085 at 21.025 kb on + strand, within HMPREF1078_RS00085 at 21.026 kb on - strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.078 kb on + strand, within HMPREF1078_RS00085 at 21.079 kb on - strand, within HMPREF1078_RS00085 at 21.113 kb on + strand, within HMPREF1078_RS00085 at 21.114 kb on - strand, within HMPREF1078_RS00085 at 21.167 kb on + strand at 21.168 kb on - strand at 21.169 kb on + strand at 21.170 kb on - strand at 21.170 kb on - strand at 21.173 kb on - strand at 21.175 kb on + strand at 21.176 kb on - strand at 21.176 kb on - strand at 21.176 kb on - strand at 21.178 kb on - strand at 21.178 kb on - strand at 21.197 kb on + strand at 21.211 kb on - strand at 21.222 kb on + strand at 21.244 kb on - strand at 21.360 kb on - strand, within HMPREF1078_RS00090 at 21.448 kb on + strand, within HMPREF1078_RS00090 at 21.449 kb on - strand, within HMPREF1078_RS00090 at 21.449 kb on - strand, within HMPREF1078_RS00090 at 21.512 kb on - strand, within HMPREF1078_RS00090 at 21.523 kb on - strand, within HMPREF1078_RS00090 at 21.567 kb on + strand, within HMPREF1078_RS00090 at 21.668 kb on + strand, within HMPREF1078_RS00090 at 21.669 kb on - strand, within HMPREF1078_RS00090 at 21.669 kb on - strand, within HMPREF1078_RS00090 at 21.673 kb on + strand, within HMPREF1078_RS00090 at 21.673 kb on + strand, within HMPREF1078_RS00090 at 21.719 kb on + strand, within HMPREF1078_RS00090 at 21.720 kb on - strand, within HMPREF1078_RS00090 at 21.762 kb on - strand, within HMPREF1078_RS00090 at 21.762 kb on - strand, within HMPREF1078_RS00090 at 21.762 kb on - strand, within HMPREF1078_RS00090 at 21.763 kb on + strand, within HMPREF1078_RS00090 at 21.763 kb on + strand, within HMPREF1078_RS00090 at 21.764 kb on - strand, within HMPREF1078_RS00090 at 21.764 kb on - strand, within HMPREF1078_RS00090 at 21.770 kb on - strand, within HMPREF1078_RS00090 at 21.770 kb on - strand, within HMPREF1078_RS00090 at 21.848 kb on - strand, within HMPREF1078_RS00090 at 21.854 kb on - strand, within HMPREF1078_RS00090 at 21.854 kb on - strand, within HMPREF1078_RS00090 at 21.885 kb on + strand, within HMPREF1078_RS00090 at 21.886 kb on - strand, within HMPREF1078_RS00090 at 21.983 kb on + strand, within HMPREF1078_RS00090 at 21.983 kb on + strand, within HMPREF1078_RS00090 at 21.984 kb on - strand, within HMPREF1078_RS00090 at 21.986 kb on + strand, within HMPREF1078_RS00090 at 21.987 kb on - strand, within HMPREF1078_RS00090 at 21.987 kb on - strand, within HMPREF1078_RS00090 at 22.003 kb on + strand, within HMPREF1078_RS00090 at 22.116 kb on - strand at 22.141 kb on + strand at 22.142 kb on - strand at 22.175 kb on - strand at 22.196 kb on + strand at 22.211 kb on + strand at 22.334 kb on + strand at 22.335 kb on - strand at 22.345 kb on + strand, within HMPREF1078_RS00095 at 22.346 kb on - strand, within HMPREF1078_RS00095 at 22.352 kb on - strand, within HMPREF1078_RS00095 at 22.371 kb on - strand, within HMPREF1078_RS00095 at 22.401 kb on + strand, within HMPREF1078_RS00095 at 22.402 kb on - strand, within HMPREF1078_RS00095 at 22.402 kb on - strand, within HMPREF1078_RS00095 at 22.421 kb on + strand, within HMPREF1078_RS00095 at 22.421 kb on + strand, within HMPREF1078_RS00095 at 22.421 kb on + strand, within HMPREF1078_RS00095 at 22.486 kb on - strand, within HMPREF1078_RS00095 at 22.514 kb on + strand, within HMPREF1078_RS00095 at 22.570 kb on + strand, within HMPREF1078_RS00095 at 22.653 kb on + strand, within HMPREF1078_RS00095 at 22.653 kb on + strand, within HMPREF1078_RS00095 at 22.653 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.655 kb on + strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.656 kb on - strand, within HMPREF1078_RS00095 at 22.673 kb on + strand, within HMPREF1078_RS00095 at 22.674 kb on - strand, within HMPREF1078_RS00095 at 22.695 kb on - strand, within HMPREF1078_RS00095 at 22.696 kb on - strand, within HMPREF1078_RS00095 at 22.714 kb on - strand, within HMPREF1078_RS00095 at 22.725 kb on + strand, within HMPREF1078_RS00095 at 22.749 kb on - strand, within HMPREF1078_RS00095 at 22.802 kb on + strand, within HMPREF1078_RS00095 at 22.805 kb on + strand, within HMPREF1078_RS00095 at 22.827 kb on + strand, within HMPREF1078_RS00095 at 22.827 kb on + strand, within HMPREF1078_RS00095 at 22.896 kb on + strand, within HMPREF1078_RS00095 at 22.896 kb on + strand, within HMPREF1078_RS00095 at 22.896 kb on + strand, within HMPREF1078_RS00095 at 22.897 kb on + strand, within HMPREF1078_RS00095 at 22.897 kb on - strand, within HMPREF1078_RS00095 at 22.897 kb on - strand, within HMPREF1078_RS00095 at 22.947 kb on - strand, within HMPREF1078_RS00095 at 22.958 kb on + strand, within HMPREF1078_RS00095 at 22.958 kb on + strand, within HMPREF1078_RS00095 at 22.959 kb on - strand, within HMPREF1078_RS00095 at 23.030 kb on - strand, within HMPREF1078_RS00095 at 23.051 kb on + strand, within HMPREF1078_RS00095 at 23.070 kb on + strand, within HMPREF1078_RS00095 at 23.070 kb on + strand, within HMPREF1078_RS00095 at 23.070 kb on + strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.071 kb on - strand, within HMPREF1078_RS00095 at 23.090 kb on + strand, within HMPREF1078_RS00095
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 20,212 - HMPREF1078_RS00080 0.75 -2.7 20,270 + HMPREF1078_RS00080 0.79 -0.7 20,273 - HMPREF1078_RS00080 0.80 -1.2 20,280 + HMPREF1078_RS00080 0.80 -1.7 20,280 + HMPREF1078_RS00080 0.80 -3.5 20,280 + HMPREF1078_RS00080 0.80 -3.4 20,280 + HMPREF1078_RS00080 0.80 -1.5 20,280 + HMPREF1078_RS00080 0.80 -2.4 20,281 - HMPREF1078_RS00080 0.80 -1.0 20,281 - HMPREF1078_RS00080 0.80 -1.3 20,281 - HMPREF1078_RS00080 0.80 -1.0 20,281 - HMPREF1078_RS00080 0.80 -1.0 20,308 - HMPREF1078_RS00080 0.82 -1.7 20,334 + HMPREF1078_RS00080 0.84 -1.0 20,334 + HMPREF1078_RS00080 0.84 -1.5 20,343 + HMPREF1078_RS00080 0.85 -1.3 20,344 - HMPREF1078_RS00080 0.85 -1.3 20,358 + HMPREF1078_RS00080 0.86 -2.3 20,359 - HMPREF1078_RS00080 0.86 -1.0 20,359 - HMPREF1078_RS00080 0.86 -1.7 20,432 - -0.8 20,481 + -1.0 20,482 - -2.6 20,482 - -2.6 20,522 - -2.3 20,522 - -3.8 20,540 + -3.2 20,540 + -0.3 20,540 + -0.3 20,540 + -2.8 20,556 + -1.0 20,573 + -0.9 20,574 - -3.1 20,638 + HMPREF1078_RS00085 0.13 -4.4 20,656 - HMPREF1078_RS00085 0.16 -1.0 20,656 - HMPREF1078_RS00085 0.16 -1.7 20,680 - HMPREF1078_RS00085 0.20 -0.7 20,680 - HMPREF1078_RS00085 0.20 -0.9 20,680 - HMPREF1078_RS00085 0.20 -2.4 20,719 + HMPREF1078_RS00085 0.26 -0.5 20,719 + HMPREF1078_RS00085 0.26 -3.1 20,831 - HMPREF1078_RS00085 0.43 -2.8 20,831 - HMPREF1078_RS00085 0.43 -2.3 20,831 - HMPREF1078_RS00085 0.43 -2.0 20,831 - HMPREF1078_RS00085 0.43 -2.4 20,852 + HMPREF1078_RS00085 0.46 -1.2 20,853 - HMPREF1078_RS00085 0.47 -0.5 20,932 - HMPREF1078_RS00085 0.59 -2.9 20,932 - HMPREF1078_RS00085 0.59 +2.3 20,941 + HMPREF1078_RS00085 0.60 -0.3 20,953 - HMPREF1078_RS00085 0.62 -1.6 20,953 - HMPREF1078_RS00085 0.62 -0.7 20,958 + HMPREF1078_RS00085 0.63 -1.0 20,958 + HMPREF1078_RS00085 0.63 -0.9 20,959 - HMPREF1078_RS00085 0.63 -1.9 20,959 - HMPREF1078_RS00085 0.63 -0.5 21,025 + HMPREF1078_RS00085 0.74 -0.2 21,026 - HMPREF1078_RS00085 0.74 -0.5 21,078 + HMPREF1078_RS00085 0.82 -0.4 21,078 + HMPREF1078_RS00085 0.82 -1.3 21,078 + HMPREF1078_RS00085 0.82 -1.4 21,078 + HMPREF1078_RS00085 0.82 +0.9 21,078 + HMPREF1078_RS00085 0.82 -0.2 21,078 + HMPREF1078_RS00085 0.82 -2.7 21,079 - HMPREF1078_RS00085 0.82 -0.1 21,113 + HMPREF1078_RS00085 0.87 -3.0 21,114 - HMPREF1078_RS00085 0.87 +1.3 21,167 + -3.0 21,168 - -3.6 21,169 + -1.7 21,170 - -1.4 21,170 - -2.5 21,173 - -0.8 21,175 + -1.0 21,176 - -3.4 21,176 - -0.2 21,176 - -4.5 21,178 - -2.8 21,178 - -1.4 21,197 + +1.3 21,211 - -1.0 21,222 + -2.6 21,244 - -1.4 21,360 - HMPREF1078_RS00090 0.17 -2.4 21,448 + HMPREF1078_RS00090 0.26 +0.5 21,449 - HMPREF1078_RS00090 0.26 -3.3 21,449 - HMPREF1078_RS00090 0.26 +0.3 21,512 - HMPREF1078_RS00090 0.32 -1.4 21,523 - HMPREF1078_RS00090 0.34 -2.0 21,567 + HMPREF1078_RS00090 0.38 -1.6 21,668 + HMPREF1078_RS00090 0.49 -1.9 21,669 - HMPREF1078_RS00090 0.49 -0.5 21,669 - HMPREF1078_RS00090 0.49 -3.4 21,673 + HMPREF1078_RS00090 0.49 -2.7 21,673 + HMPREF1078_RS00090 0.49 -4.1 21,719 + HMPREF1078_RS00090 0.54 -2.9 21,720 - HMPREF1078_RS00090 0.54 -2.2 21,762 - HMPREF1078_RS00090 0.58 -4.3 21,762 - HMPREF1078_RS00090 0.58 -2.2 21,762 - HMPREF1078_RS00090 0.58 +0.1 21,763 + HMPREF1078_RS00090 0.59 -3.3 21,763 + HMPREF1078_RS00090 0.59 -3.8 21,764 - HMPREF1078_RS00090 0.59 -1.8 21,764 - HMPREF1078_RS00090 0.59 +0.3 21,770 - HMPREF1078_RS00090 0.59 -1.9 21,770 - HMPREF1078_RS00090 0.59 -0.7 21,848 - HMPREF1078_RS00090 0.67 -1.3 21,854 - HMPREF1078_RS00090 0.68 -2.7 21,854 - HMPREF1078_RS00090 0.68 -2.6 21,885 + HMPREF1078_RS00090 0.71 -2.3 21,886 - HMPREF1078_RS00090 0.71 -3.2 21,983 + HMPREF1078_RS00090 0.81 -0.4 21,983 + HMPREF1078_RS00090 0.81 -0.3 21,984 - HMPREF1078_RS00090 0.82 -4.2 21,986 + HMPREF1078_RS00090 0.82 -3.0 21,987 - HMPREF1078_RS00090 0.82 -0.6 21,987 - HMPREF1078_RS00090 0.82 -3.8 22,003 + HMPREF1078_RS00090 0.84 -1.5 22,116 - -3.9 22,141 + -2.1 22,142 - -2.3 22,175 - -0.3 22,196 + -2.6 22,211 + -1.3 22,334 + -1.9 22,335 - -0.0 22,345 + HMPREF1078_RS00095 0.11 -3.3 22,346 - HMPREF1078_RS00095 0.11 -1.7 22,352 - HMPREF1078_RS00095 0.11 -0.7 22,371 - HMPREF1078_RS00095 0.13 -1.0 22,401 + HMPREF1078_RS00095 0.16 -3.7 22,402 - HMPREF1078_RS00095 0.16 -2.0 22,402 - HMPREF1078_RS00095 0.16 -0.7 22,421 + HMPREF1078_RS00095 0.18 -3.2 22,421 + HMPREF1078_RS00095 0.18 -0.8 22,421 + HMPREF1078_RS00095 0.18 -1.7 22,486 - HMPREF1078_RS00095 0.24 -1.3 22,514 + HMPREF1078_RS00095 0.27 -2.0 22,570 + HMPREF1078_RS00095 0.32 -2.4 22,653 + HMPREF1078_RS00095 0.40 -4.0 22,653 + HMPREF1078_RS00095 0.40 -1.7 22,653 + HMPREF1078_RS00095 0.40 -2.8 22,655 + HMPREF1078_RS00095 0.40 -2.0 22,655 + HMPREF1078_RS00095 0.40 -1.3 22,655 + HMPREF1078_RS00095 0.40 -1.0 22,655 + HMPREF1078_RS00095 0.40 -1.0 22,655 + HMPREF1078_RS00095 0.40 -0.7 22,655 + HMPREF1078_RS00095 0.40 -1.9 22,655 + HMPREF1078_RS00095 0.40 -3.4 22,655 + HMPREF1078_RS00095 0.40 -1.5 22,655 + HMPREF1078_RS00095 0.40 -2.6 22,655 + HMPREF1078_RS00095 0.40 -1.0 22,656 - HMPREF1078_RS00095 0.41 -1.5 22,656 - HMPREF1078_RS00095 0.41 -0.3 22,656 - HMPREF1078_RS00095 0.41 -2.4 22,656 - HMPREF1078_RS00095 0.41 -0.5 22,656 - HMPREF1078_RS00095 0.41 -1.7 22,656 - HMPREF1078_RS00095 0.41 -0.2 22,656 - HMPREF1078_RS00095 0.41 -3.0 22,656 - HMPREF1078_RS00095 0.41 +2.3 22,656 - HMPREF1078_RS00095 0.41 -2.4 22,656 - HMPREF1078_RS00095 0.41 -0.9 22,656 - HMPREF1078_RS00095 0.41 -1.3 22,656 - HMPREF1078_RS00095 0.41 -2.9 22,656 - HMPREF1078_RS00095 0.41 -1.7 22,673 + HMPREF1078_RS00095 0.42 -0.3 22,674 - HMPREF1078_RS00095 0.42 -1.3 22,695 - HMPREF1078_RS00095 0.44 -1.9 22,696 - HMPREF1078_RS00095 0.44 -1.9 22,714 - HMPREF1078_RS00095 0.46 -2.0 22,725 + HMPREF1078_RS00095 0.47 -2.0 22,749 - HMPREF1078_RS00095 0.49 -1.2 22,802 + HMPREF1078_RS00095 0.55 -2.5 22,805 + HMPREF1078_RS00095 0.55 -1.0 22,827 + HMPREF1078_RS00095 0.57 -1.0 22,827 + HMPREF1078_RS00095 0.57 -1.5 22,896 + HMPREF1078_RS00095 0.64 +0.3 22,896 + HMPREF1078_RS00095 0.64 -3.0 22,896 + HMPREF1078_RS00095 0.64 -2.9 22,897 + HMPREF1078_RS00095 0.64 -1.3 22,897 - HMPREF1078_RS00095 0.64 -0.1 22,897 - HMPREF1078_RS00095 0.64 -0.8 22,947 - HMPREF1078_RS00095 0.68 -1.4 22,958 + HMPREF1078_RS00095 0.69 -2.6 22,958 + HMPREF1078_RS00095 0.69 -2.6 22,959 - HMPREF1078_RS00095 0.70 -0.1 23,030 - HMPREF1078_RS00095 0.76 -1.5 23,051 + HMPREF1078_RS00095 0.78 -0.7 23,070 + HMPREF1078_RS00095 0.80 -1.3 23,070 + HMPREF1078_RS00095 0.80 -3.1 23,070 + HMPREF1078_RS00095 0.80 -0.7 23,071 - HMPREF1078_RS00095 0.80 -1.3 23,071 - HMPREF1078_RS00095 0.80 -2.7 23,071 - HMPREF1078_RS00095 0.80 +0.3 23,071 - HMPREF1078_RS00095 0.80 -1.5 23,090 + HMPREF1078_RS00095 0.82 -1.9
Or see this region's nucleotide sequence