Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00070

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
15,856	-				-0.5
15,870	+				-1.6
15,871	-				-3.1
15,876	-				+0.1
15,910	+				+0.3
15,967	-				-0.7
15,970	+				-0.4
15,971	-				-0.9
16,082	-		HMPREF1078_RS00065	0.21	+0.9
16,176	+		HMPREF1078_RS00065	0.31	+0.2
16,176	+		HMPREF1078_RS00065	0.31	-0.2
16,176	+		HMPREF1078_RS00065	0.31	+0.5
16,256	-		HMPREF1078_RS00065	0.39	-1.1
16,257	+		HMPREF1078_RS00065	0.39	-0.8
16,258	-		HMPREF1078_RS00065	0.39	+0.5
16,259	+		HMPREF1078_RS00065	0.39	+0.5
16,260	-		HMPREF1078_RS00065	0.39	-1.5
16,270	+		HMPREF1078_RS00065	0.40	+1.9
16,278	-		HMPREF1078_RS00065	0.41	-1.9
16,281	-		HMPREF1078_RS00065	0.41	-1.7
16,303	-		HMPREF1078_RS00065	0.43	+0.3
16,328	+		HMPREF1078_RS00065	0.46	+0.3
16,329	-		HMPREF1078_RS00065	0.46	+1.0
16,530	+		HMPREF1078_RS00065	0.66	+0.9
16,531	-		HMPREF1078_RS00065	0.66	-0.7
16,590	-		HMPREF1078_RS00065	0.72	+0.1
16,624	+		HMPREF1078_RS00065	0.76	-0.4
16,624	+		HMPREF1078_RS00065	0.76	+0.2
16,624	+		HMPREF1078_RS00065	0.76	+0.7
16,625	-		HMPREF1078_RS00065	0.76	-1.3
16,625	-		HMPREF1078_RS00065	0.76	-0.5
16,625	-		HMPREF1078_RS00065	0.76	-0.2
16,625	-		HMPREF1078_RS00065	0.76	-0.3
16,652	+		HMPREF1078_RS00065	0.79	+0.4
16,660	-		HMPREF1078_RS00065	0.79	+1.1
16,667	-		HMPREF1078_RS00065	0.80	+1.3
16,684	-		HMPREF1078_RS00065	0.82	+0.2
16,722	-		HMPREF1078_RS00065	0.86	+0.3
16,733	+		HMPREF1078_RS00065	0.87	+2.1
16,734	-		HMPREF1078_RS00065	0.87	+2.1
16,734	-		HMPREF1078_RS00065	0.87	+0.2
16,764	+		HMPREF1078_RS00065	0.90	-2.4
16,764	+		HMPREF1078_RS00065	0.90	-0.3
16,766	+				-0.1
16,767	-				-0.2
16,767	-				-0.6
16,779	-				+0.4
16,782	+				+0.3
16,782	+				-0.7
16,783	-				-0.4
16,825	-				+1.0
16,825	-				+0.0
16,856	+				+0.3
16,856	+				-1.3
16,857	-				+0.2
16,893	+				+0.3
17,035	+		HMPREF1078_RS00070	0.16	-1.3
17,066	-		HMPREF1078_RS00070	0.19	-1.7
17,126	-		HMPREF1078_RS00070	0.24	-2.2
17,138	+		HMPREF1078_RS00070	0.25	-2.5
17,138	+		HMPREF1078_RS00070	0.25	-2.3
17,154	-		HMPREF1078_RS00070	0.27	-2.6
17,318	-		HMPREF1078_RS00070	0.41	-2.3
17,318	-		HMPREF1078_RS00070	0.41	-3.3
17,325	-		HMPREF1078_RS00070	0.42	-2.0
17,334	-		HMPREF1078_RS00070	0.43	-1.8
17,347	-		HMPREF1078_RS00070	0.44	-3.5
17,347	-		HMPREF1078_RS00070	0.44	-3.1
17,448	+		HMPREF1078_RS00070	0.53	-1.8
17,449	-		HMPREF1078_RS00070	0.53	-1.0
17,508	+		HMPREF1078_RS00070	0.58	-0.6
17,589	+		HMPREF1078_RS00070	0.65	-1.0
17,589	+		HMPREF1078_RS00070	0.65	-1.0
17,656	-		HMPREF1078_RS00070	0.71	-3.8
17,656	-		HMPREF1078_RS00070	0.71	-2.0
17,658	+		HMPREF1078_RS00070	0.71	+1.3
17,741	+		HMPREF1078_RS00070	0.79	+0.0
17,741	+		HMPREF1078_RS00070	0.79	-3.4
17,742	-		HMPREF1078_RS00070	0.79	-1.5
17,742	-		HMPREF1078_RS00070	0.79	-1.3
17,742	-		HMPREF1078_RS00070	0.79	-4.4
17,747	-		HMPREF1078_RS00070	0.79	-2.0
17,747	-		HMPREF1078_RS00070	0.79	-1.5
17,761	+		HMPREF1078_RS00070	0.80	-3.2
17,762	+		HMPREF1078_RS00070	0.81	+0.3
17,762	+		HMPREF1078_RS00070	0.81	-1.2
17,764	+		HMPREF1078_RS00070	0.81	-2.9
17,764	+		HMPREF1078_RS00070	0.81	-1.0
17,764	+		HMPREF1078_RS00070	0.81	-2.9
17,764	+		HMPREF1078_RS00070	0.81	-1.9
17,765	-		HMPREF1078_RS00070	0.81	-3.3
17,765	-		HMPREF1078_RS00070	0.81	-1.0
17,771	-		HMPREF1078_RS00070	0.81	-1.9
17,771	-		HMPREF1078_RS00070	0.81	-1.7
17,771	-		HMPREF1078_RS00070	0.81	-1.2
17,774	+		HMPREF1078_RS00070	0.82	-1.3
17,774	+		HMPREF1078_RS00070	0.82	-0.8
17,774	+		HMPREF1078_RS00070	0.82	-1.2
17,775	-		HMPREF1078_RS00070	0.82	-0.9
17,783	-		HMPREF1078_RS00070	0.82	-3.2
17,783	-		HMPREF1078_RS00070	0.82	-2.5
17,793	+		HMPREF1078_RS00070	0.83	-2.5
17,796	+		HMPREF1078_RS00070	0.84	-1.7
17,861	+		HMPREF1078_RS00070	0.89	-3.0
17,861	+		HMPREF1078_RS00070	0.89	-2.3
17,862	-		HMPREF1078_RS00070	0.89	-2.8
17,902	+				-2.0
17,907	+				-1.6
17,907	+				-3.5
17,908	-				-2.0
17,909	+				-4.5
17,909	+				-2.0
17,909	+				-1.3
17,910	-				-2.3
17,910	-				-0.8
17,957	+				-0.1
17,959	+				-3.9
18,076	+				-2.8
18,087	-				-1.3
18,111	-		HMPREF1078_RS00075	0.10	-1.9
18,183	+		HMPREF1078_RS00075	0.16	-1.2
18,221	-		HMPREF1078_RS00075	0.19	-0.0
18,264	+		HMPREF1078_RS00075	0.22	+0.7
18,265	-		HMPREF1078_RS00075	0.22	-2.0
18,359	+		HMPREF1078_RS00075	0.30	-1.3
18,359	+		HMPREF1078_RS00075	0.30	-3.6
18,376	-		HMPREF1078_RS00075	0.31	+0.1
18,378	-		HMPREF1078_RS00075	0.32	-2.9
18,554	+		HMPREF1078_RS00075	0.46	-1.3
18,554	+		HMPREF1078_RS00075	0.46	-0.3
18,637	-		HMPREF1078_RS00075	0.52	+0.2
18,644	+		HMPREF1078_RS00075	0.53	-1.5
18,644	-		HMPREF1078_RS00075	0.53	-1.5
18,645	-		HMPREF1078_RS00075	0.53	-2.1
18,645	-		HMPREF1078_RS00075	0.53	-0.4
18,712	-		HMPREF1078_RS00075	0.58	-3.6
18,725	-		HMPREF1078_RS00075	0.60	-2.2
18,796	-		HMPREF1078_RS00075	0.65	-2.7
18,796	-		HMPREF1078_RS00075	0.65	+2.3
18,812	+		HMPREF1078_RS00075	0.67	+0.3
18,824	-		HMPREF1078_RS00075	0.67	-0.7
18,824	-		HMPREF1078_RS00075	0.67	-2.0
18,869	-		HMPREF1078_RS00075	0.71	-2.7
18,870	+		HMPREF1078_RS00075	0.71	+1.7
18,871	-		HMPREF1078_RS00075	0.71	-2.8
18,871	-		HMPREF1078_RS00075	0.71	-2.4
18,871	-		HMPREF1078_RS00075	0.71	-3.9
18,873	-		HMPREF1078_RS00075	0.71	-1.5
18,980	+		HMPREF1078_RS00075	0.80	-1.2