Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01430 and HMPREF1078_RS01435 overlap by 4 nucleotides HMPREF1078_RS01435 and HMPREF1078_RS01440 are separated by 128 nucleotides HMPREF1078_RS01440 and HMPREF1078_RS01445 are separated by 29 nucleotides
HMPREF1078_RS01430: HMPREF1078_RS01430 - YncE family protein, at 366,825 to 368,600
_RS01430
HMPREF1078_RS01435: HMPREF1078_RS01435 - hypothetical protein, at 368,597 to 369,691
_RS01435
HMPREF1078_RS01440: HMPREF1078_RS01440 - hypothetical protein, at 369,820 to 370,581
_RS01440
HMPREF1078_RS01445: HMPREF1078_RS01445 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 370,611 to 374,606
_RS01445
Position (kb) 368
369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 367.728 kb on - strand, within HMPREF1078_RS01430 at 367.755 kb on + strand, within HMPREF1078_RS01430 at 367.764 kb on - strand, within HMPREF1078_RS01430 at 367.798 kb on - strand, within HMPREF1078_RS01430 at 367.844 kb on + strand, within HMPREF1078_RS01430 at 367.845 kb on - strand, within HMPREF1078_RS01430 at 367.916 kb on + strand, within HMPREF1078_RS01430 at 367.916 kb on + strand, within HMPREF1078_RS01430 at 367.917 kb on - strand, within HMPREF1078_RS01430 at 368.151 kb on - strand, within HMPREF1078_RS01430 at 368.151 kb on - strand, within HMPREF1078_RS01430 at 368.289 kb on + strand, within HMPREF1078_RS01430 at 368.289 kb on + strand, within HMPREF1078_RS01430 at 368.289 kb on + strand, within HMPREF1078_RS01430 at 368.289 kb on + strand, within HMPREF1078_RS01430 at 368.382 kb on + strand, within HMPREF1078_RS01430 at 368.383 kb on - strand, within HMPREF1078_RS01430 at 368.384 kb on + strand, within HMPREF1078_RS01430 at 368.384 kb on + strand, within HMPREF1078_RS01430 at 368.384 kb on + strand, within HMPREF1078_RS01430 at 368.384 kb on + strand, within HMPREF1078_RS01430 at 368.385 kb on - strand, within HMPREF1078_RS01430 at 368.397 kb on + strand, within HMPREF1078_RS01430 at 368.407 kb on + strand, within HMPREF1078_RS01430 at 368.407 kb on + strand, within HMPREF1078_RS01430 at 368.584 kb on - strand at 368.604 kb on - strand at 368.622 kb on - strand at 368.622 kb on - strand at 368.623 kb on + strand at 368.627 kb on - strand at 368.665 kb on - strand at 368.747 kb on + strand, within HMPREF1078_RS01435 at 368.747 kb on + strand, within HMPREF1078_RS01435 at 368.747 kb on + strand, within HMPREF1078_RS01435 at 368.748 kb on - strand, within HMPREF1078_RS01435 at 368.748 kb on - strand, within HMPREF1078_RS01435 at 368.820 kb on - strand, within HMPREF1078_RS01435 at 368.820 kb on - strand, within HMPREF1078_RS01435 at 368.867 kb on - strand, within HMPREF1078_RS01435 at 368.867 kb on - strand, within HMPREF1078_RS01435 at 368.893 kb on + strand, within HMPREF1078_RS01435 at 368.894 kb on - strand, within HMPREF1078_RS01435 at 368.925 kb on - strand, within HMPREF1078_RS01435 at 368.925 kb on - strand, within HMPREF1078_RS01435 at 369.021 kb on + strand, within HMPREF1078_RS01435 at 369.205 kb on + strand, within HMPREF1078_RS01435 at 369.234 kb on + strand, within HMPREF1078_RS01435 at 369.278 kb on + strand, within HMPREF1078_RS01435 at 369.278 kb on + strand, within HMPREF1078_RS01435 at 369.279 kb on - strand, within HMPREF1078_RS01435 at 369.279 kb on - strand, within HMPREF1078_RS01435 at 369.490 kb on + strand, within HMPREF1078_RS01435 at 369.551 kb on + strand, within HMPREF1078_RS01435 at 369.572 kb on + strand, within HMPREF1078_RS01435 at 369.572 kb on + strand, within HMPREF1078_RS01435 at 369.603 kb on - strand at 369.622 kb on - strand at 369.626 kb on + strand at 369.629 kb on - strand at 369.769 kb on + strand at 369.776 kb on + strand at 369.776 kb on + strand at 369.777 kb on - strand at 369.791 kb on + strand at 369.798 kb on - strand at 369.798 kb on - strand at 369.871 kb on - strand at 369.898 kb on - strand, within HMPREF1078_RS01440 at 369.909 kb on + strand, within HMPREF1078_RS01440 at 369.978 kb on + strand, within HMPREF1078_RS01440 at 369.978 kb on + strand, within HMPREF1078_RS01440 at 369.979 kb on - strand, within HMPREF1078_RS01440 at 369.990 kb on + strand, within HMPREF1078_RS01440 at 369.990 kb on + strand, within HMPREF1078_RS01440 at 370.006 kb on - strand, within HMPREF1078_RS01440 at 370.018 kb on + strand, within HMPREF1078_RS01440 at 370.030 kb on + strand, within HMPREF1078_RS01440 at 370.031 kb on - strand, within HMPREF1078_RS01440 at 370.031 kb on - strand, within HMPREF1078_RS01440 at 370.112 kb on - strand, within HMPREF1078_RS01440 at 370.188 kb on - strand, within HMPREF1078_RS01440 at 370.191 kb on + strand, within HMPREF1078_RS01440 at 370.191 kb on + strand, within HMPREF1078_RS01440 at 370.191 kb on + strand, within HMPREF1078_RS01440 at 370.192 kb on - strand, within HMPREF1078_RS01440 at 370.231 kb on + strand, within HMPREF1078_RS01440 at 370.245 kb on + strand, within HMPREF1078_RS01440 at 370.245 kb on + strand, within HMPREF1078_RS01440 at 370.249 kb on + strand, within HMPREF1078_RS01440 at 370.249 kb on + strand, within HMPREF1078_RS01440 at 370.249 kb on + strand, within HMPREF1078_RS01440 at 370.345 kb on + strand, within HMPREF1078_RS01440 at 370.346 kb on - strand, within HMPREF1078_RS01440 at 370.433 kb on + strand, within HMPREF1078_RS01440 at 370.433 kb on + strand, within HMPREF1078_RS01440 at 370.434 kb on - strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.442 kb on + strand, within HMPREF1078_RS01440 at 370.485 kb on + strand, within HMPREF1078_RS01440 at 370.485 kb on + strand, within HMPREF1078_RS01440 at 370.485 kb on + strand, within HMPREF1078_RS01440 at 370.509 kb on + strand at 370.531 kb on + strand at 370.531 kb on + strand at 370.532 kb on - strand at 370.532 kb on - strand at 370.532 kb on - strand at 370.578 kb on - strand at 370.579 kb on + strand at 370.579 kb on + strand at 370.579 kb on + strand at 370.579 kb on + strand at 370.580 kb on - strand at 370.580 kb on - strand at 370.580 kb on - strand at 370.580 kb on - strand at 370.582 kb on + strand at 370.583 kb on - strand at 370.586 kb on + strand at 370.586 kb on + strand at 370.587 kb on - strand at 370.598 kb on + strand at 370.621 kb on - strand at 370.624 kb on - strand at 370.633 kb on + strand at 370.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3 remove 367,728 - HMPREF1078_RS01430 0.51 -0.3 367,755 + HMPREF1078_RS01430 0.52 -0.7 367,764 - HMPREF1078_RS01430 0.53 +0.2 367,798 - HMPREF1078_RS01430 0.55 +0.0 367,844 + HMPREF1078_RS01430 0.57 +0.3 367,845 - HMPREF1078_RS01430 0.57 +1.3 367,916 + HMPREF1078_RS01430 0.61 +1.0 367,916 + HMPREF1078_RS01430 0.61 +0.1 367,917 - HMPREF1078_RS01430 0.61 +0.9 368,151 - HMPREF1078_RS01430 0.75 +0.4 368,151 - HMPREF1078_RS01430 0.75 +1.6 368,289 + HMPREF1078_RS01430 0.82 -0.7 368,289 + HMPREF1078_RS01430 0.82 -1.8 368,289 + HMPREF1078_RS01430 0.82 -1.1 368,289 + HMPREF1078_RS01430 0.82 -0.3 368,382 + HMPREF1078_RS01430 0.88 +1.3 368,383 - HMPREF1078_RS01430 0.88 +0.1 368,384 + HMPREF1078_RS01430 0.88 +0.1 368,384 + HMPREF1078_RS01430 0.88 +0.6 368,384 + HMPREF1078_RS01430 0.88 -0.3 368,384 + HMPREF1078_RS01430 0.88 +0.3 368,385 - HMPREF1078_RS01430 0.88 +0.4 368,397 + HMPREF1078_RS01430 0.89 -1.3 368,407 + HMPREF1078_RS01430 0.89 -1.4 368,407 + HMPREF1078_RS01430 0.89 +2.3 368,584 - -0.7 368,604 - +2.3 368,622 - -0.6 368,622 - -0.4 368,623 + -1.2 368,627 - +1.8 368,665 - -1.5 368,747 + HMPREF1078_RS01435 0.14 +0.6 368,747 + HMPREF1078_RS01435 0.14 -2.1 368,747 + HMPREF1078_RS01435 0.14 -0.9 368,748 - HMPREF1078_RS01435 0.14 +0.1 368,748 - HMPREF1078_RS01435 0.14 +0.1 368,820 - HMPREF1078_RS01435 0.20 -0.5 368,820 - HMPREF1078_RS01435 0.20 -0.3 368,867 - HMPREF1078_RS01435 0.25 +1.3 368,867 - HMPREF1078_RS01435 0.25 -1.4 368,893 + HMPREF1078_RS01435 0.27 -0.7 368,894 - HMPREF1078_RS01435 0.27 -1.1 368,925 - HMPREF1078_RS01435 0.30 +0.7 368,925 - HMPREF1078_RS01435 0.30 +3.3 369,021 + HMPREF1078_RS01435 0.39 -1.9 369,205 + HMPREF1078_RS01435 0.56 -1.5 369,234 + HMPREF1078_RS01435 0.58 -0.1 369,278 + HMPREF1078_RS01435 0.62 -0.7 369,278 + HMPREF1078_RS01435 0.62 -2.1 369,279 - HMPREF1078_RS01435 0.62 -0.6 369,279 - HMPREF1078_RS01435 0.62 -0.7 369,490 + HMPREF1078_RS01435 0.82 +0.4 369,551 + HMPREF1078_RS01435 0.87 -1.9 369,572 + HMPREF1078_RS01435 0.89 -0.1 369,572 + HMPREF1078_RS01435 0.89 -1.5 369,603 - +3.3 369,622 - -1.3 369,626 + +0.3 369,629 - +1.3 369,769 + +1.6 369,776 + -1.0 369,776 + -0.5 369,777 - -0.0 369,791 + +1.3 369,798 - -0.3 369,798 - +1.3 369,871 - +0.0 369,898 - HMPREF1078_RS01440 0.10 -0.3 369,909 + HMPREF1078_RS01440 0.12 +1.9 369,978 + HMPREF1078_RS01440 0.21 -1.4 369,978 + HMPREF1078_RS01440 0.21 +1.3 369,979 - HMPREF1078_RS01440 0.21 +0.5 369,990 + HMPREF1078_RS01440 0.22 -1.7 369,990 + HMPREF1078_RS01440 0.22 +0.2 370,006 - HMPREF1078_RS01440 0.24 +1.0 370,018 + HMPREF1078_RS01440 0.26 -1.0 370,030 + HMPREF1078_RS01440 0.28 +2.3 370,031 - HMPREF1078_RS01440 0.28 -0.2 370,031 - HMPREF1078_RS01440 0.28 +0.9 370,112 - HMPREF1078_RS01440 0.38 -1.5 370,188 - HMPREF1078_RS01440 0.48 -0.3 370,191 + HMPREF1078_RS01440 0.49 -0.4 370,191 + HMPREF1078_RS01440 0.49 -0.2 370,191 + HMPREF1078_RS01440 0.49 -0.1 370,192 - HMPREF1078_RS01440 0.49 -3.2 370,231 + HMPREF1078_RS01440 0.54 -0.8 370,245 + HMPREF1078_RS01440 0.56 -1.5 370,245 + HMPREF1078_RS01440 0.56 +1.3 370,249 + HMPREF1078_RS01440 0.56 +1.0 370,249 + HMPREF1078_RS01440 0.56 -1.5 370,249 + HMPREF1078_RS01440 0.56 +0.3 370,345 + HMPREF1078_RS01440 0.69 -1.5 370,346 - HMPREF1078_RS01440 0.69 +1.1 370,433 + HMPREF1078_RS01440 0.80 +0.4 370,433 + HMPREF1078_RS01440 0.80 +1.3 370,434 - HMPREF1078_RS01440 0.81 -1.5 370,442 + HMPREF1078_RS01440 0.82 -0.1 370,442 + HMPREF1078_RS01440 0.82 -1.0 370,442 + HMPREF1078_RS01440 0.82 -0.1 370,442 + HMPREF1078_RS01440 0.82 -1.3 370,442 + HMPREF1078_RS01440 0.82 -2.2 370,442 + HMPREF1078_RS01440 0.82 -1.2 370,485 + HMPREF1078_RS01440 0.87 +1.9 370,485 + HMPREF1078_RS01440 0.87 +0.3 370,485 + HMPREF1078_RS01440 0.87 +0.3 370,509 + -2.6 370,531 + -0.8 370,531 + -0.2 370,532 - -1.9 370,532 - -1.2 370,532 - -0.1 370,578 - +1.0 370,579 + +1.3 370,579 + -0.3 370,579 + +0.1 370,579 + -0.3 370,580 - +3.0 370,580 - -0.8 370,580 - +1.6 370,580 - +0.1 370,582 + -1.5 370,583 - -0.4 370,586 + -1.7 370,586 + +0.7 370,587 - +0.9 370,598 + +2.9 370,621 - -0.2 370,624 - +0.3 370,633 + +1.8 370,634 - +0.5
Or see this region's nucleotide sequence