Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00650 and HMPREF1078_RS00655 are separated by 9 nucleotides HMPREF1078_RS00655 and HMPREF1078_RS00660 are separated by 106 nucleotides HMPREF1078_RS00660 and HMPREF1078_RS00665 are separated by 253 nucleotides
HMPREF1078_RS00650: HMPREF1078_RS00650 - PAS domain-containing sensor histidine kinase, at 151,629 to 154,025
_RS00650
HMPREF1078_RS00655: HMPREF1078_RS00655 - uracil phosphoribosyltransferase, at 154,035 to 154,688
_RS00655
HMPREF1078_RS00660: HMPREF1078_RS00660 - HU family DNA-binding protein, at 154,795 to 155,085
_RS00660
HMPREF1078_RS00665: HMPREF1078_RS00665 - UDP-N-acetylmuramate dehydrogenase, at 155,339 to 156,352
_RS00665
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 153.799 kb on + strand at 153.800 kb on - strand at 153.844 kb on + strand at 153.845 kb on + strand at 153.885 kb on + strand at 153.887 kb on + strand at 153.887 kb on + strand at 153.935 kb on + strand at 153.943 kb on + strand at 153.944 kb on - strand at 153.944 kb on - strand at 154.023 kb on + strand at 154.031 kb on + strand at 154.031 kb on + strand at 154.036 kb on + strand at 154.037 kb on - strand at 154.037 kb on - strand at 154.037 kb on - strand at 154.090 kb on + strand at 154.090 kb on + strand at 154.105 kb on - strand, within HMPREF1078_RS00655 at 154.131 kb on + strand, within HMPREF1078_RS00655 at 154.131 kb on + strand, within HMPREF1078_RS00655 at 154.131 kb on + strand, within HMPREF1078_RS00655 at 154.132 kb on - strand, within HMPREF1078_RS00655 at 154.133 kb on + strand, within HMPREF1078_RS00655 at 154.169 kb on - strand, within HMPREF1078_RS00655 at 154.260 kb on - strand, within HMPREF1078_RS00655 at 154.290 kb on + strand, within HMPREF1078_RS00655 at 154.292 kb on + strand, within HMPREF1078_RS00655 at 154.293 kb on - strand, within HMPREF1078_RS00655 at 154.293 kb on - strand, within HMPREF1078_RS00655 at 154.337 kb on + strand, within HMPREF1078_RS00655 at 154.366 kb on + strand, within HMPREF1078_RS00655 at 154.366 kb on + strand, within HMPREF1078_RS00655 at 154.367 kb on - strand, within HMPREF1078_RS00655 at 154.458 kb on - strand, within HMPREF1078_RS00655 at 154.532 kb on - strand, within HMPREF1078_RS00655 at 154.544 kb on + strand, within HMPREF1078_RS00655 at 154.545 kb on - strand, within HMPREF1078_RS00655 at 154.555 kb on + strand, within HMPREF1078_RS00655 at 154.586 kb on + strand, within HMPREF1078_RS00655 at 154.601 kb on + strand, within HMPREF1078_RS00655 at 154.601 kb on + strand, within HMPREF1078_RS00655 at 154.676 kb on + strand at 154.727 kb on - strand at 154.787 kb on - strand at 154.818 kb on + strand at 154.819 kb on - strand at 154.835 kb on + strand, within HMPREF1078_RS00660 at 154.856 kb on - strand, within HMPREF1078_RS00660 at 154.910 kb on - strand, within HMPREF1078_RS00660 at 154.933 kb on + strand, within HMPREF1078_RS00660 at 154.933 kb on + strand, within HMPREF1078_RS00660 at 154.934 kb on - strand, within HMPREF1078_RS00660 at 154.981 kb on - strand, within HMPREF1078_RS00660 at 154.981 kb on - strand, within HMPREF1078_RS00660 at 154.981 kb on - strand, within HMPREF1078_RS00660 at 154.990 kb on + strand, within HMPREF1078_RS00660 at 154.999 kb on + strand, within HMPREF1078_RS00660 at 154.999 kb on + strand, within HMPREF1078_RS00660 at 154.999 kb on + strand, within HMPREF1078_RS00660 at 155.000 kb on - strand, within HMPREF1078_RS00660 at 155.000 kb on - strand, within HMPREF1078_RS00660 at 155.003 kb on + strand, within HMPREF1078_RS00660 at 155.004 kb on - strand, within HMPREF1078_RS00660 at 155.004 kb on - strand, within HMPREF1078_RS00660 at 155.004 kb on - strand, within HMPREF1078_RS00660 at 155.038 kb on + strand, within HMPREF1078_RS00660 at 155.139 kb on + strand at 155.139 kb on + strand at 155.140 kb on - strand at 155.146 kb on + strand at 155.147 kb on - strand at 155.185 kb on + strand at 155.186 kb on - strand at 155.199 kb on + strand at 155.199 kb on + strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.200 kb on - strand at 155.257 kb on - strand at 155.300 kb on + strand at 155.331 kb on + strand at 155.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3 remove 153,799 + -2.5 153,800 - -0.3 153,844 + -0.2 153,845 + +0.0 153,885 + -0.2 153,887 + -1.1 153,887 + -1.0 153,935 + -1.3 153,943 + +0.9 153,944 - +1.5 153,944 - +0.9 154,023 + +0.5 154,031 + -0.3 154,031 + -1.1 154,036 + +0.1 154,037 - -1.1 154,037 - +0.7 154,037 - +0.3 154,090 + -1.6 154,090 + +0.4 154,105 - HMPREF1078_RS00655 0.11 +0.0 154,131 + HMPREF1078_RS00655 0.15 +0.4 154,131 + HMPREF1078_RS00655 0.15 +0.2 154,131 + HMPREF1078_RS00655 0.15 +0.5 154,132 - HMPREF1078_RS00655 0.15 -1.1 154,133 + HMPREF1078_RS00655 0.15 +0.2 154,169 - HMPREF1078_RS00655 0.20 -0.3 154,260 - HMPREF1078_RS00655 0.34 +0.2 154,290 + HMPREF1078_RS00655 0.39 -1.6 154,292 + HMPREF1078_RS00655 0.39 +0.2 154,293 - HMPREF1078_RS00655 0.39 +1.0 154,293 - HMPREF1078_RS00655 0.39 +0.2 154,337 + HMPREF1078_RS00655 0.46 +1.2 154,366 + HMPREF1078_RS00655 0.51 -0.4 154,366 + HMPREF1078_RS00655 0.51 +1.0 154,367 - HMPREF1078_RS00655 0.51 +0.2 154,458 - HMPREF1078_RS00655 0.65 +0.0 154,532 - HMPREF1078_RS00655 0.76 -1.4 154,544 + HMPREF1078_RS00655 0.78 +1.0 154,545 - HMPREF1078_RS00655 0.78 -0.5 154,555 + HMPREF1078_RS00655 0.80 +0.8 154,586 + HMPREF1078_RS00655 0.84 -0.3 154,601 + HMPREF1078_RS00655 0.87 -0.8 154,601 + HMPREF1078_RS00655 0.87 -1.0 154,676 + -2.6 154,727 - +0.2 154,787 - -0.3 154,818 + +0.7 154,819 - +0.3 154,835 + HMPREF1078_RS00660 0.14 -0.1 154,856 - HMPREF1078_RS00660 0.21 +1.2 154,910 - HMPREF1078_RS00660 0.40 -3.2 154,933 + HMPREF1078_RS00660 0.47 -0.8 154,933 + HMPREF1078_RS00660 0.47 +0.9 154,934 - HMPREF1078_RS00660 0.48 -1.6 154,981 - HMPREF1078_RS00660 0.64 -0.0 154,981 - HMPREF1078_RS00660 0.64 -2.3 154,981 - HMPREF1078_RS00660 0.64 -0.3 154,990 + HMPREF1078_RS00660 0.67 +1.2 154,999 + HMPREF1078_RS00660 0.70 -1.8 154,999 + HMPREF1078_RS00660 0.70 -0.8 154,999 + HMPREF1078_RS00660 0.70 -0.4 155,000 - HMPREF1078_RS00660 0.70 -0.7 155,000 - HMPREF1078_RS00660 0.70 -0.3 155,003 + HMPREF1078_RS00660 0.71 -1.9 155,004 - HMPREF1078_RS00660 0.72 -0.8 155,004 - HMPREF1078_RS00660 0.72 -0.2 155,004 - HMPREF1078_RS00660 0.72 -0.3 155,038 + HMPREF1078_RS00660 0.84 +1.6 155,139 + +0.3 155,139 + +0.1 155,140 - -1.3 155,146 + +0.6 155,147 - -2.7 155,185 + +1.2 155,186 - -0.1 155,199 + -2.5 155,199 + +1.5 155,200 - -0.2 155,200 - +0.8 155,200 - -0.3 155,200 - +1.6 155,200 - -0.2 155,257 - +0.1 155,300 + -1.1 155,331 + -0.8 155,331 + -1.0
Or see this region's nucleotide sequence