Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15710 and HMPREF1078_RS15715 are separated by 39 nucleotides HMPREF1078_RS15715 and HMPREF1078_RS20075 are separated by 45 nucleotides HMPREF1078_RS20075 and HMPREF1078_RS15720 are separated by 241 nucleotides
HMPREF1078_RS15710: HMPREF1078_RS15710 - TolC family protein, at 257,695 to 259,077
_RS15710
HMPREF1078_RS15715: HMPREF1078_RS15715 - TetR/AcrR family transcriptional regulator, at 259,117 to 259,536
_RS15715
HMPREF1078_RS20075: HMPREF1078_RS20075 - helix-turn-helix domain containing protein, at 259,582 to 259,707
_RS20075
HMPREF1078_RS15720: HMPREF1078_RS15720 - helix-turn-helix transcriptional regulator, at 259,949 to 260,857
_RS15720
Position (kb) 259
260 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 258.142 kb on + strand, within HMPREF1078_RS15710 at 258.143 kb on - strand, within HMPREF1078_RS15710 at 258.243 kb on + strand, within HMPREF1078_RS15710 at 258.244 kb on - strand, within HMPREF1078_RS15710 at 258.244 kb on - strand, within HMPREF1078_RS15710 at 258.284 kb on - strand, within HMPREF1078_RS15710 at 258.324 kb on + strand, within HMPREF1078_RS15710 at 258.328 kb on + strand, within HMPREF1078_RS15710 at 258.328 kb on + strand, within HMPREF1078_RS15710 at 258.329 kb on - strand, within HMPREF1078_RS15710 at 258.329 kb on - strand, within HMPREF1078_RS15710 at 258.347 kb on - strand, within HMPREF1078_RS15710 at 258.347 kb on - strand, within HMPREF1078_RS15710 at 258.350 kb on - strand, within HMPREF1078_RS15710 at 258.478 kb on - strand, within HMPREF1078_RS15710 at 258.566 kb on + strand, within HMPREF1078_RS15710 at 258.577 kb on + strand, within HMPREF1078_RS15710 at 258.652 kb on + strand, within HMPREF1078_RS15710 at 258.653 kb on - strand, within HMPREF1078_RS15710 at 258.718 kb on - strand, within HMPREF1078_RS15710 at 258.718 kb on - strand, within HMPREF1078_RS15710 at 258.772 kb on + strand, within HMPREF1078_RS15710 at 258.772 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.854 kb on - strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.876 kb on - strand, within HMPREF1078_RS15710 at 258.876 kb on - strand, within HMPREF1078_RS15710 at 258.894 kb on - strand, within HMPREF1078_RS15710 at 259.063 kb on + strand at 259.079 kb on + strand at 259.139 kb on + strand at 259.152 kb on - strand at 259.152 kb on - strand at 259.182 kb on + strand, within HMPREF1078_RS15715 at 259.202 kb on + strand, within HMPREF1078_RS15715 at 259.203 kb on + strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.205 kb on + strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.216 kb on - strand, within HMPREF1078_RS15715 at 259.297 kb on + strand, within HMPREF1078_RS15715 at 259.361 kb on - strand, within HMPREF1078_RS15715 at 259.435 kb on + strand, within HMPREF1078_RS15715 at 259.436 kb on + strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.470 kb on + strand, within HMPREF1078_RS15715 at 259.501 kb on + strand at 259.501 kb on + strand at 259.502 kb on - strand at 259.551 kb on + strand at 259.554 kb on + strand at 259.554 kb on + strand at 259.556 kb on + strand at 259.557 kb on - strand at 259.567 kb on + strand at 259.568 kb on - strand at 259.568 kb on - strand at 259.569 kb on + strand at 259.610 kb on + strand, within HMPREF1078_RS20075 at 259.611 kb on - strand, within HMPREF1078_RS20075 at 259.629 kb on + strand, within HMPREF1078_RS20075 at 259.630 kb on - strand, within HMPREF1078_RS20075 at 259.639 kb on - strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.709 kb on - strand at 259.730 kb on + strand at 259.736 kb on - strand at 259.743 kb on - strand at 259.750 kb on - strand at 259.779 kb on - strand at 259.848 kb on - strand at 259.848 kb on - strand at 259.864 kb on + strand at 259.933 kb on + strand at 259.934 kb on - strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.945 kb on - strand at 259.965 kb on + strand at 259.966 kb on - strand at 259.969 kb on - strand at 259.988 kb on - strand at 259.988 kb on - strand at 259.993 kb on + strand at 259.997 kb on - strand at 260.050 kb on + strand, within HMPREF1078_RS15720 at 260.100 kb on + strand, within HMPREF1078_RS15720 at 260.156 kb on + strand, within HMPREF1078_RS15720 at 260.165 kb on + strand, within HMPREF1078_RS15720 at 260.224 kb on + strand, within HMPREF1078_RS15720 at 260.225 kb on - strand, within HMPREF1078_RS15720 at 260.287 kb on + strand, within HMPREF1078_RS15720 at 260.288 kb on - strand, within HMPREF1078_RS15720 at 260.317 kb on + strand, within HMPREF1078_RS15720 at 260.320 kb on - strand, within HMPREF1078_RS15720 at 260.328 kb on - strand, within HMPREF1078_RS15720 at 260.329 kb on + strand, within HMPREF1078_RS15720 at 260.354 kb on - strand, within HMPREF1078_RS15720 at 260.405 kb on - strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.452 kb on - strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.497 kb on - strand, within HMPREF1078_RS15720 at 260.503 kb on - strand, within HMPREF1078_RS15720
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3 remove 258,142 + HMPREF1078_RS15710 0.32 -0.1 258,143 - HMPREF1078_RS15710 0.32 -1.3 258,243 + HMPREF1078_RS15710 0.40 -3.9 258,244 - HMPREF1078_RS15710 0.40 +1.0 258,244 - HMPREF1078_RS15710 0.40 -0.3 258,284 - HMPREF1078_RS15710 0.43 +0.2 258,324 + HMPREF1078_RS15710 0.45 +1.0 258,328 + HMPREF1078_RS15710 0.46 +2.0 258,328 + HMPREF1078_RS15710 0.46 +0.8 258,329 - HMPREF1078_RS15710 0.46 +0.3 258,329 - HMPREF1078_RS15710 0.46 +0.0 258,347 - HMPREF1078_RS15710 0.47 +2.0 258,347 - HMPREF1078_RS15710 0.47 +0.0 258,350 - HMPREF1078_RS15710 0.47 -1.0 258,478 - HMPREF1078_RS15710 0.57 -1.3 258,566 + HMPREF1078_RS15710 0.63 -3.5 258,577 + HMPREF1078_RS15710 0.64 +1.1 258,652 + HMPREF1078_RS15710 0.69 -2.4 258,653 - HMPREF1078_RS15710 0.69 +1.7 258,718 - HMPREF1078_RS15710 0.74 -1.3 258,718 - HMPREF1078_RS15710 0.74 +0.4 258,772 + HMPREF1078_RS15710 0.78 +1.3 258,772 + HMPREF1078_RS15710 0.78 +1.0 258,806 + HMPREF1078_RS15710 0.80 -1.0 258,806 + HMPREF1078_RS15710 0.80 -0.6 258,806 + HMPREF1078_RS15710 0.80 +1.6 258,807 - HMPREF1078_RS15710 0.80 +0.8 258,807 - HMPREF1078_RS15710 0.80 -0.4 258,807 - HMPREF1078_RS15710 0.80 -1.3 258,854 - HMPREF1078_RS15710 0.84 -1.2 258,875 + HMPREF1078_RS15710 0.85 -1.9 258,875 + HMPREF1078_RS15710 0.85 -0.2 258,875 + HMPREF1078_RS15710 0.85 -0.4 258,875 + HMPREF1078_RS15710 0.85 -2.1 258,876 - HMPREF1078_RS15710 0.85 +0.0 258,876 - HMPREF1078_RS15710 0.85 +2.0 258,894 - HMPREF1078_RS15710 0.87 +0.8 259,063 + +0.9 259,079 + +1.0 259,139 + +0.9 259,152 - +0.2 259,152 - -1.3 259,182 + HMPREF1078_RS15715 0.15 +1.5 259,202 + HMPREF1078_RS15715 0.20 -0.1 259,203 + HMPREF1078_RS15715 0.20 -0.2 259,204 - HMPREF1078_RS15715 0.21 -2.8 259,204 - HMPREF1078_RS15715 0.21 -0.8 259,205 + HMPREF1078_RS15715 0.21 +0.0 259,206 - HMPREF1078_RS15715 0.21 +1.0 259,206 - HMPREF1078_RS15715 0.21 +0.1 259,216 - HMPREF1078_RS15715 0.24 -1.2 259,297 + HMPREF1078_RS15715 0.43 -1.7 259,361 - HMPREF1078_RS15715 0.58 +0.0 259,435 + HMPREF1078_RS15715 0.76 +0.0 259,436 + HMPREF1078_RS15715 0.76 +1.3 259,437 - HMPREF1078_RS15715 0.76 -0.4 259,437 - HMPREF1078_RS15715 0.76 -1.8 259,470 + HMPREF1078_RS15715 0.84 -1.1 259,501 + -3.0 259,501 + -0.6 259,502 - +0.7 259,551 + +0.9 259,554 + -3.1 259,554 + +0.1 259,556 + -0.6 259,557 - +0.5 259,567 + +0.5 259,568 - +0.2 259,568 - +0.9 259,569 + -0.1 259,610 + HMPREF1078_RS20075 0.22 +0.0 259,611 - HMPREF1078_RS20075 0.23 -1.1 259,629 + HMPREF1078_RS20075 0.37 -0.2 259,630 - HMPREF1078_RS20075 0.38 -1.8 259,639 - HMPREF1078_RS20075 0.45 -2.4 259,647 + HMPREF1078_RS20075 0.52 -0.7 259,647 + HMPREF1078_RS20075 0.52 +0.0 259,657 - HMPREF1078_RS20075 0.60 -0.5 259,657 - HMPREF1078_RS20075 0.60 -1.6 259,709 - +0.0 259,730 + -2.6 259,736 - +0.9 259,743 - +1.3 259,750 - +0.1 259,779 - +1.2 259,848 - +0.9 259,848 - -1.6 259,864 + -0.6 259,933 + +2.6 259,934 - +0.9 259,936 + +0.2 259,936 + +0.1 259,936 + -1.3 259,944 + -1.0 259,944 + +0.2 259,944 + -0.2 259,944 + -1.8 259,944 + -2.7 259,944 + -0.6 259,944 + +0.6 259,944 + -0.7 259,944 + +0.1 259,944 + -1.4 259,945 - -0.1 259,965 + -3.6 259,966 - +0.2 259,969 - -0.2 259,988 - +0.2 259,988 - +0.9 259,993 + +0.7 259,997 - +1.1 260,050 + HMPREF1078_RS15720 0.11 -0.8 260,100 + HMPREF1078_RS15720 0.17 +0.0 260,156 + HMPREF1078_RS15720 0.23 +1.8 260,165 + HMPREF1078_RS15720 0.24 +2.2 260,224 + HMPREF1078_RS15720 0.30 +1.3 260,225 - HMPREF1078_RS15720 0.30 -0.7 260,287 + HMPREF1078_RS15720 0.37 -0.2 260,288 - HMPREF1078_RS15720 0.37 -0.1 260,317 + HMPREF1078_RS15720 0.40 +0.2 260,320 - HMPREF1078_RS15720 0.41 +1.0 260,328 - HMPREF1078_RS15720 0.42 -0.5 260,329 + HMPREF1078_RS15720 0.42 +0.3 260,354 - HMPREF1078_RS15720 0.45 -1.9 260,405 - HMPREF1078_RS15720 0.50 +0.4 260,406 + HMPREF1078_RS15720 0.50 -0.9 260,406 + HMPREF1078_RS15720 0.50 +0.2 260,452 - HMPREF1078_RS15720 0.55 -1.7 260,494 + HMPREF1078_RS15720 0.60 +0.9 260,494 + HMPREF1078_RS15720 0.60 -0.9 260,497 - HMPREF1078_RS15720 0.60 -0.6 260,503 - HMPREF1078_RS15720 0.61 -0.6
Or see this region's nucleotide sequence