Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13980 and HMPREF1078_RS13985 are separated by 96 nucleotides HMPREF1078_RS13985 and HMPREF1078_RS13990 are separated by 35 nucleotides
HMPREF1078_RS13980: HMPREF1078_RS13980 - phospho-sugar mutase, at 253,756 to 255,504
_RS13980
HMPREF1078_RS13985: HMPREF1078_RS13985 - M23 family metallopeptidase, at 255,601 to 257,271
_RS13985
HMPREF1078_RS13990: HMPREF1078_RS13990 - endonuclease/exonuclease/phosphatase family protein, at 257,307 to 258,380
_RS13990
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 255.510 kb on - strand at 255.510 kb on - strand at 255.510 kb on - strand at 255.510 kb on - strand at 255.512 kb on - strand at 255.575 kb on + strand at 255.603 kb on - strand at 255.603 kb on - strand at 255.707 kb on + strand at 255.707 kb on + strand at 255.746 kb on + strand at 255.747 kb on - strand at 255.886 kb on - strand, within HMPREF1078_RS13985 at 255.888 kb on - strand, within HMPREF1078_RS13985 at 255.979 kb on - strand, within HMPREF1078_RS13985 at 256.212 kb on + strand, within HMPREF1078_RS13985 at 256.212 kb on + strand, within HMPREF1078_RS13985 at 256.213 kb on - strand, within HMPREF1078_RS13985 at 256.216 kb on + strand, within HMPREF1078_RS13985 at 256.255 kb on + strand, within HMPREF1078_RS13985 at 256.302 kb on + strand, within HMPREF1078_RS13985 at 256.303 kb on - strand, within HMPREF1078_RS13985 at 256.303 kb on - strand, within HMPREF1078_RS13985 at 256.304 kb on + strand, within HMPREF1078_RS13985 at 256.305 kb on - strand, within HMPREF1078_RS13985 at 256.305 kb on - strand, within HMPREF1078_RS13985 at 256.316 kb on + strand, within HMPREF1078_RS13985 at 256.316 kb on + strand, within HMPREF1078_RS13985 at 256.317 kb on - strand, within HMPREF1078_RS13985 at 256.333 kb on + strand, within HMPREF1078_RS13985 at 256.334 kb on - strand, within HMPREF1078_RS13985 at 256.335 kb on + strand, within HMPREF1078_RS13985 at 256.336 kb on - strand, within HMPREF1078_RS13985 at 256.336 kb on - strand, within HMPREF1078_RS13985 at 256.391 kb on - strand, within HMPREF1078_RS13985 at 256.404 kb on + strand, within HMPREF1078_RS13985 at 256.406 kb on + strand, within HMPREF1078_RS13985 at 256.445 kb on + strand, within HMPREF1078_RS13985 at 256.445 kb on + strand, within HMPREF1078_RS13985 at 256.445 kb on + strand, within HMPREF1078_RS13985 at 256.445 kb on + strand, within HMPREF1078_RS13985 at 256.494 kb on + strand, within HMPREF1078_RS13985 at 256.527 kb on + strand, within HMPREF1078_RS13985 at 256.528 kb on - strand, within HMPREF1078_RS13985 at 256.530 kb on + strand, within HMPREF1078_RS13985 at 256.560 kb on + strand, within HMPREF1078_RS13985 at 256.569 kb on - strand, within HMPREF1078_RS13985 at 256.569 kb on - strand, within HMPREF1078_RS13985 at 256.574 kb on + strand, within HMPREF1078_RS13985 at 256.777 kb on - strand, within HMPREF1078_RS13985 at 256.858 kb on - strand, within HMPREF1078_RS13985 at 256.860 kb on - strand, within HMPREF1078_RS13985 at 256.938 kb on - strand, within HMPREF1078_RS13985 at 256.938 kb on - strand, within HMPREF1078_RS13985 at 256.954 kb on - strand, within HMPREF1078_RS13985 at 256.954 kb on - strand, within HMPREF1078_RS13985 at 257.030 kb on - strand, within HMPREF1078_RS13985 at 257.064 kb on + strand, within HMPREF1078_RS13985 at 257.064 kb on + strand, within HMPREF1078_RS13985 at 257.064 kb on + strand, within HMPREF1078_RS13985 at 257.064 kb on + strand, within HMPREF1078_RS13985 at 257.064 kb on + strand, within HMPREF1078_RS13985 at 257.065 kb on - strand, within HMPREF1078_RS13985 at 257.065 kb on - strand, within HMPREF1078_RS13985 at 257.065 kb on - strand, within HMPREF1078_RS13985 at 257.065 kb on - strand, within HMPREF1078_RS13985 at 257.065 kb on - strand, within HMPREF1078_RS13985 at 257.065 kb on - strand, within HMPREF1078_RS13985 at 257.065 kb on - strand, within HMPREF1078_RS13985 at 257.071 kb on + strand, within HMPREF1078_RS13985 at 257.071 kb on + strand, within HMPREF1078_RS13985 at 257.071 kb on + strand, within HMPREF1078_RS13985 at 257.072 kb on - strand, within HMPREF1078_RS13985 at 257.075 kb on + strand, within HMPREF1078_RS13985 at 257.075 kb on + strand, within HMPREF1078_RS13985 at 257.076 kb on - strand, within HMPREF1078_RS13985 at 257.173 kb on - strand at 257.224 kb on + strand at 257.267 kb on + strand at 257.268 kb on - strand at 257.271 kb on + strand at 257.271 kb on + strand at 257.272 kb on - strand at 257.272 kb on - strand at 257.272 kb on - strand at 257.272 kb on - strand at 257.276 kb on + strand at 257.277 kb on - strand at 257.282 kb on + strand at 257.308 kb on + strand at 257.319 kb on + strand at 257.366 kb on - strand at 257.366 kb on - strand at 257.366 kb on - strand at 257.377 kb on + strand at 257.381 kb on - strand at 257.521 kb on - strand, within HMPREF1078_RS13990 at 257.590 kb on + strand, within HMPREF1078_RS13990 at 257.685 kb on + strand, within HMPREF1078_RS13990 at 257.714 kb on + strand, within HMPREF1078_RS13990 at 257.715 kb on - strand, within HMPREF1078_RS13990 at 257.784 kb on - strand, within HMPREF1078_RS13990 at 257.912 kb on + strand, within HMPREF1078_RS13990 at 257.921 kb on + strand, within HMPREF1078_RS13990 at 257.921 kb on + strand, within HMPREF1078_RS13990 at 257.921 kb on + strand, within HMPREF1078_RS13990 at 257.922 kb on - strand, within HMPREF1078_RS13990 at 257.927 kb on + strand, within HMPREF1078_RS13990 at 257.928 kb on - strand, within HMPREF1078_RS13990 at 258.012 kb on - strand, within HMPREF1078_RS13990 at 258.012 kb on - strand, within HMPREF1078_RS13990 at 258.183 kb on + strand, within HMPREF1078_RS13990 at 258.184 kb on + strand, within HMPREF1078_RS13990 at 258.184 kb on - strand, within HMPREF1078_RS13990 at 258.188 kb on + strand, within HMPREF1078_RS13990 at 258.209 kb on + strand, within HMPREF1078_RS13990
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3 remove 255,510 - +0.0 255,510 - -3.4 255,510 - -2.4 255,510 - -1.0 255,512 - -2.0 255,575 + -2.3 255,603 - +1.0 255,603 - -1.0 255,707 + +0.6 255,707 + -0.1 255,746 + +0.0 255,747 - +1.2 255,886 - HMPREF1078_RS13985 0.17 +1.4 255,888 - HMPREF1078_RS13985 0.17 +1.0 255,979 - HMPREF1078_RS13985 0.23 -1.0 256,212 + HMPREF1078_RS13985 0.37 +0.5 256,212 + HMPREF1078_RS13985 0.37 -2.1 256,213 - HMPREF1078_RS13985 0.37 -1.7 256,216 + HMPREF1078_RS13985 0.37 +0.7 256,255 + HMPREF1078_RS13985 0.39 +1.6 256,302 + HMPREF1078_RS13985 0.42 +1.0 256,303 - HMPREF1078_RS13985 0.42 +3.0 256,303 - HMPREF1078_RS13985 0.42 +0.0 256,304 + HMPREF1078_RS13985 0.42 +1.0 256,305 - HMPREF1078_RS13985 0.42 +0.6 256,305 - HMPREF1078_RS13985 0.42 -1.5 256,316 + HMPREF1078_RS13985 0.43 +1.6 256,316 + HMPREF1078_RS13985 0.43 +0.8 256,317 - HMPREF1078_RS13985 0.43 +1.9 256,333 + HMPREF1078_RS13985 0.44 -1.0 256,334 - HMPREF1078_RS13985 0.44 +1.0 256,335 + HMPREF1078_RS13985 0.44 +1.9 256,336 - HMPREF1078_RS13985 0.44 -0.5 256,336 - HMPREF1078_RS13985 0.44 +0.3 256,391 - HMPREF1078_RS13985 0.47 -0.3 256,404 + HMPREF1078_RS13985 0.48 +1.5 256,406 + HMPREF1078_RS13985 0.48 -0.5 256,445 + HMPREF1078_RS13985 0.51 -0.6 256,445 + HMPREF1078_RS13985 0.51 +0.3 256,445 + HMPREF1078_RS13985 0.51 +0.4 256,445 + HMPREF1078_RS13985 0.51 -0.7 256,494 + HMPREF1078_RS13985 0.53 -0.3 256,527 + HMPREF1078_RS13985 0.55 +0.6 256,528 - HMPREF1078_RS13985 0.55 -0.1 256,530 + HMPREF1078_RS13985 0.56 +0.0 256,560 + HMPREF1078_RS13985 0.57 +1.8 256,569 - HMPREF1078_RS13985 0.58 +1.0 256,569 - HMPREF1078_RS13985 0.58 -0.4 256,574 + HMPREF1078_RS13985 0.58 +0.6 256,777 - HMPREF1078_RS13985 0.70 +0.7 256,858 - HMPREF1078_RS13985 0.75 +1.6 256,860 - HMPREF1078_RS13985 0.75 +0.8 256,938 - HMPREF1078_RS13985 0.80 -1.3 256,938 - HMPREF1078_RS13985 0.80 +0.0 256,954 - HMPREF1078_RS13985 0.81 -0.2 256,954 - HMPREF1078_RS13985 0.81 -2.8 257,030 - HMPREF1078_RS13985 0.86 +1.3 257,064 + HMPREF1078_RS13985 0.88 -1.0 257,064 + HMPREF1078_RS13985 0.88 +0.7 257,064 + HMPREF1078_RS13985 0.88 +0.6 257,064 + HMPREF1078_RS13985 0.88 -1.0 257,064 + HMPREF1078_RS13985 0.88 +2.6 257,065 - HMPREF1078_RS13985 0.88 +1.7 257,065 - HMPREF1078_RS13985 0.88 +0.4 257,065 - HMPREF1078_RS13985 0.88 +0.8 257,065 - HMPREF1078_RS13985 0.88 -2.3 257,065 - HMPREF1078_RS13985 0.88 +0.4 257,065 - HMPREF1078_RS13985 0.88 +0.4 257,065 - HMPREF1078_RS13985 0.88 +0.1 257,071 + HMPREF1078_RS13985 0.88 -1.1 257,071 + HMPREF1078_RS13985 0.88 +1.2 257,071 + HMPREF1078_RS13985 0.88 -0.5 257,072 - HMPREF1078_RS13985 0.88 +0.5 257,075 + HMPREF1078_RS13985 0.88 +2.0 257,075 + HMPREF1078_RS13985 0.88 -0.1 257,076 - HMPREF1078_RS13985 0.88 -1.7 257,173 - +1.2 257,224 + +2.0 257,267 + -1.3 257,268 - -0.0 257,271 + -0.5 257,271 + +0.7 257,272 - -0.7 257,272 - +0.5 257,272 - -1.1 257,272 - -1.3 257,276 + -0.1 257,277 - +0.4 257,282 + +2.1 257,308 + -0.9 257,319 + +1.0 257,366 - +0.7 257,366 - +1.8 257,366 - -2.5 257,377 + +0.4 257,381 - +0.3 257,521 - HMPREF1078_RS13990 0.20 -1.0 257,590 + HMPREF1078_RS13990 0.26 +0.0 257,685 + HMPREF1078_RS13990 0.35 +0.2 257,714 + HMPREF1078_RS13990 0.38 +0.8 257,715 - HMPREF1078_RS13990 0.38 +0.2 257,784 - HMPREF1078_RS13990 0.44 +1.5 257,912 + HMPREF1078_RS13990 0.56 +0.3 257,921 + HMPREF1078_RS13990 0.57 -0.9 257,921 + HMPREF1078_RS13990 0.57 +1.6 257,921 + HMPREF1078_RS13990 0.57 +1.3 257,922 - HMPREF1078_RS13990 0.57 -0.4 257,927 + HMPREF1078_RS13990 0.58 -0.8 257,928 - HMPREF1078_RS13990 0.58 -0.6 258,012 - HMPREF1078_RS13990 0.66 -1.2 258,012 - HMPREF1078_RS13990 0.66 -3.8 258,183 + HMPREF1078_RS13990 0.82 +1.0 258,184 + HMPREF1078_RS13990 0.82 -2.1 258,184 - HMPREF1078_RS13990 0.82 -0.3 258,188 + HMPREF1078_RS13990 0.82 +0.3 258,209 + HMPREF1078_RS13990 0.84 +0.0
Or see this region's nucleotide sequence