Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08465 and HMPREF1078_RS08470 overlap by 22 nucleotides HMPREF1078_RS08470 and HMPREF1078_RS08475 are separated by 88 nucleotides HMPREF1078_RS08475 and HMPREF1078_RS08480 overlap by 8 nucleotides HMPREF1078_RS08480 and HMPREF1078_RS08485 are separated by 3 nucleotides
HMPREF1078_RS08465: HMPREF1078_RS08465 - GNAT family N-acetyltransferase, at 268,737 to 269,828
_RS08465
HMPREF1078_RS08470: HMPREF1078_RS08470 - hypothetical protein, at 269,807 to 270,268
_RS08470
HMPREF1078_RS08475: HMPREF1078_RS08475 - ABC transporter permease, at 270,357 to 271,313
_RS08475
HMPREF1078_RS08480: HMPREF1078_RS08480 - ABC transporter ATP-binding protein, at 271,306 to 272,046
_RS08480
HMPREF1078_RS08485: HMPREF1078_RS08485 - NEW3 domain-containing protein, at 272,050 to 273,195
_RS08485
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 269.493 kb on - strand, within HMPREF1078_RS08465 at 269.493 kb on - strand, within HMPREF1078_RS08465 at 269.549 kb on - strand, within HMPREF1078_RS08465 at 269.610 kb on - strand, within HMPREF1078_RS08465 at 269.760 kb on + strand at 269.761 kb on - strand at 269.776 kb on + strand at 269.776 kb on + strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.778 kb on + strand at 269.778 kb on + strand at 269.779 kb on - strand at 269.780 kb on + strand at 269.780 kb on + strand at 269.780 kb on + strand at 269.781 kb on - strand at 269.781 kb on - strand at 269.781 kb on - strand at 269.785 kb on + strand at 269.785 kb on + strand at 269.785 kb on + strand at 269.785 kb on + strand at 269.786 kb on - strand at 269.786 kb on - strand at 269.786 kb on - strand at 269.786 kb on - strand at 269.788 kb on + strand at 269.827 kb on - strand at 269.857 kb on + strand, within HMPREF1078_RS08470 at 269.857 kb on + strand, within HMPREF1078_RS08470 at 269.857 kb on + strand, within HMPREF1078_RS08470 at 269.858 kb on - strand, within HMPREF1078_RS08470 at 269.858 kb on - strand, within HMPREF1078_RS08470 at 269.863 kb on + strand, within HMPREF1078_RS08470 at 269.864 kb on - strand, within HMPREF1078_RS08470 at 269.864 kb on - strand, within HMPREF1078_RS08470 at 269.875 kb on + strand, within HMPREF1078_RS08470 at 269.877 kb on + strand, within HMPREF1078_RS08470 at 269.877 kb on + strand, within HMPREF1078_RS08470 at 269.899 kb on + strand, within HMPREF1078_RS08470 at 269.899 kb on + strand, within HMPREF1078_RS08470 at 269.900 kb on - strand, within HMPREF1078_RS08470 at 269.900 kb on - strand, within HMPREF1078_RS08470 at 269.900 kb on - strand, within HMPREF1078_RS08470 at 269.903 kb on + strand, within HMPREF1078_RS08470 at 269.934 kb on + strand, within HMPREF1078_RS08470 at 269.934 kb on + strand, within HMPREF1078_RS08470 at 270.149 kb on + strand, within HMPREF1078_RS08470 at 270.149 kb on + strand, within HMPREF1078_RS08470 at 270.150 kb on - strand, within HMPREF1078_RS08470 at 270.221 kb on + strand, within HMPREF1078_RS08470 at 270.222 kb on - strand at 270.227 kb on + strand at 270.267 kb on - strand at 270.272 kb on + strand at 270.351 kb on + strand at 270.351 kb on + strand at 270.355 kb on - strand at 270.384 kb on - strand at 270.394 kb on + strand at 270.394 kb on + strand at 270.395 kb on - strand at 270.411 kb on + strand at 270.411 kb on + strand at 270.412 kb on - strand at 270.608 kb on + strand, within HMPREF1078_RS08475 at 270.689 kb on + strand, within HMPREF1078_RS08475 at 270.693 kb on - strand, within HMPREF1078_RS08475 at 270.694 kb on + strand, within HMPREF1078_RS08475 at 270.840 kb on - strand, within HMPREF1078_RS08475 at 270.991 kb on - strand, within HMPREF1078_RS08475 at 270.992 kb on + strand, within HMPREF1078_RS08475 at 271.042 kb on - strand, within HMPREF1078_RS08475 at 271.076 kb on + strand, within HMPREF1078_RS08475 at 271.191 kb on - strand, within HMPREF1078_RS08475 at 271.192 kb on + strand, within HMPREF1078_RS08475 at 271.205 kb on + strand, within HMPREF1078_RS08475 at 271.205 kb on + strand, within HMPREF1078_RS08475 at 271.307 kb on + strand at 271.343 kb on + strand at 271.343 kb on + strand at 271.343 kb on + strand at 271.343 kb on + strand at 271.344 kb on - strand at 271.344 kb on - strand at 271.344 kb on - strand at 271.344 kb on - strand at 271.347 kb on + strand at 271.348 kb on - strand at 271.348 kb on - strand at 271.348 kb on - strand at 271.522 kb on - strand, within HMPREF1078_RS08480 at 271.573 kb on - strand, within HMPREF1078_RS08480 at 271.577 kb on - strand, within HMPREF1078_RS08480 at 271.771 kb on - strand, within HMPREF1078_RS08480 at 271.771 kb on - strand, within HMPREF1078_RS08480 at 271.803 kb on - strand, within HMPREF1078_RS08480 at 271.855 kb on + strand, within HMPREF1078_RS08480 at 271.856 kb on - strand, within HMPREF1078_RS08480 at 271.856 kb on - strand, within HMPREF1078_RS08480 at 271.856 kb on - strand, within HMPREF1078_RS08480 at 271.903 kb on + strand, within HMPREF1078_RS08480 at 271.903 kb on + strand, within HMPREF1078_RS08480 at 271.993 kb on - strand at 272.037 kb on - strand at 272.051 kb on + strand at 272.051 kb on + strand at 272.078 kb on + strand at 272.081 kb on + strand at 272.211 kb on - strand, within HMPREF1078_RS08485 at 272.253 kb on + strand, within HMPREF1078_RS08485 at 272.293 kb on - strand, within HMPREF1078_RS08485
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3 remove 269,493 - HMPREF1078_RS08465 0.69 +1.2 269,493 - HMPREF1078_RS08465 0.69 +1.6 269,549 - HMPREF1078_RS08465 0.74 -0.4 269,610 - HMPREF1078_RS08465 0.80 +0.9 269,760 + -0.1 269,761 - -0.4 269,776 + +0.6 269,776 + -0.3 269,777 - -0.1 269,777 - -2.7 269,777 - +2.2 269,777 - +0.5 269,777 - +2.2 269,777 - +0.6 269,777 - +0.0 269,778 + -0.4 269,778 + -0.5 269,779 - -2.1 269,780 + -0.5 269,780 + -0.2 269,780 + -0.3 269,781 - -0.4 269,781 - -0.5 269,781 - +0.6 269,785 + -1.0 269,785 + +0.5 269,785 + +0.5 269,785 + +1.8 269,786 - +0.6 269,786 - -2.1 269,786 - -0.4 269,786 - -3.4 269,788 + +0.3 269,827 - -1.0 269,857 + HMPREF1078_RS08470 0.11 +0.5 269,857 + HMPREF1078_RS08470 0.11 -0.2 269,857 + HMPREF1078_RS08470 0.11 -0.4 269,858 - HMPREF1078_RS08470 0.11 -0.2 269,858 - HMPREF1078_RS08470 0.11 -0.6 269,863 + HMPREF1078_RS08470 0.12 +1.6 269,864 - HMPREF1078_RS08470 0.12 +0.3 269,864 - HMPREF1078_RS08470 0.12 +0.4 269,875 + HMPREF1078_RS08470 0.15 -0.7 269,877 + HMPREF1078_RS08470 0.15 -1.2 269,877 + HMPREF1078_RS08470 0.15 +0.7 269,899 + HMPREF1078_RS08470 0.20 +1.0 269,899 + HMPREF1078_RS08470 0.20 -2.0 269,900 - HMPREF1078_RS08470 0.20 -1.0 269,900 - HMPREF1078_RS08470 0.20 -0.3 269,900 - HMPREF1078_RS08470 0.20 +0.3 269,903 + HMPREF1078_RS08470 0.21 -3.4 269,934 + HMPREF1078_RS08470 0.27 -1.3 269,934 + HMPREF1078_RS08470 0.27 -0.4 270,149 + HMPREF1078_RS08470 0.74 -0.7 270,149 + HMPREF1078_RS08470 0.74 +0.0 270,150 - HMPREF1078_RS08470 0.74 +2.0 270,221 + HMPREF1078_RS08470 0.90 +1.0 270,222 - +1.0 270,227 + -1.1 270,267 - +0.1 270,272 + +2.6 270,351 + -0.2 270,351 + +0.0 270,355 - -1.5 270,384 - -2.5 270,394 + +0.0 270,394 + -0.1 270,395 - +0.8 270,411 + +0.5 270,411 + -0.6 270,412 - +0.6 270,608 + HMPREF1078_RS08475 0.26 +1.2 270,689 + HMPREF1078_RS08475 0.35 +0.5 270,693 - HMPREF1078_RS08475 0.35 -2.0 270,694 + HMPREF1078_RS08475 0.35 +0.4 270,840 - HMPREF1078_RS08475 0.50 +1.8 270,991 - HMPREF1078_RS08475 0.66 -1.2 270,992 + HMPREF1078_RS08475 0.66 +1.0 271,042 - HMPREF1078_RS08475 0.72 +0.5 271,076 + HMPREF1078_RS08475 0.75 -2.0 271,191 - HMPREF1078_RS08475 0.87 -1.1 271,192 + HMPREF1078_RS08475 0.87 -1.1 271,205 + HMPREF1078_RS08475 0.89 +2.3 271,205 + HMPREF1078_RS08475 0.89 -0.5 271,307 + -0.1 271,343 + -0.1 271,343 + +1.1 271,343 + -0.8 271,343 + +1.5 271,344 - -0.7 271,344 - +1.6 271,344 - -1.0 271,344 - -1.2 271,347 + +1.6 271,348 - -1.3 271,348 - +0.0 271,348 - -2.5 271,522 - HMPREF1078_RS08480 0.29 -1.1 271,573 - HMPREF1078_RS08480 0.36 -1.5 271,577 - HMPREF1078_RS08480 0.37 -1.4 271,771 - HMPREF1078_RS08480 0.63 -0.8 271,771 - HMPREF1078_RS08480 0.63 +1.0 271,803 - HMPREF1078_RS08480 0.67 -2.4 271,855 + HMPREF1078_RS08480 0.74 -0.5 271,856 - HMPREF1078_RS08480 0.74 -1.3 271,856 - HMPREF1078_RS08480 0.74 +1.7 271,856 - HMPREF1078_RS08480 0.74 +1.6 271,903 + HMPREF1078_RS08480 0.81 -0.2 271,903 + HMPREF1078_RS08480 0.81 -1.1 271,993 - +1.6 272,037 - -2.5 272,051 + +0.0 272,051 + -0.1 272,078 + -2.0 272,081 + -1.5 272,211 - HMPREF1078_RS08485 0.14 -2.4 272,253 + HMPREF1078_RS08485 0.18 +1.0 272,293 - HMPREF1078_RS08485 0.21 +0.1
Or see this region's nucleotide sequence