Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06585 and HMPREF1078_RS06590 are separated by 218 nucleotides HMPREF1078_RS06590 and HMPREF1078_RS06595 are separated by 114 nucleotides
HMPREF1078_RS06585: HMPREF1078_RS06585 - T9SS type A sorting domain-containing protein, at 704,755 to 705,288
_RS06585
HMPREF1078_RS06590: HMPREF1078_RS06590 - sulfatase, at 705,507 to 707,051
_RS06590
HMPREF1078_RS06595: HMPREF1078_RS06595 - DUF362 domain-containing protein, at 707,166 to 708,200
_RS06595
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 704.560 kb on - strand at 704.637 kb on + strand at 704.637 kb on + strand at 704.759 kb on + strand at 704.759 kb on + strand at 704.759 kb on + strand at 704.760 kb on - strand at 704.760 kb on - strand at 704.760 kb on - strand at 704.787 kb on + strand at 704.926 kb on - strand, within HMPREF1078_RS06585 at 704.975 kb on + strand, within HMPREF1078_RS06585 at 705.000 kb on + strand, within HMPREF1078_RS06585 at 705.000 kb on + strand, within HMPREF1078_RS06585 at 705.012 kb on + strand, within HMPREF1078_RS06585 at 705.013 kb on - strand, within HMPREF1078_RS06585 at 705.050 kb on + strand, within HMPREF1078_RS06585 at 705.114 kb on + strand, within HMPREF1078_RS06585 at 705.114 kb on + strand, within HMPREF1078_RS06585 at 705.115 kb on - strand, within HMPREF1078_RS06585 at 705.115 kb on - strand, within HMPREF1078_RS06585 at 705.119 kb on - strand, within HMPREF1078_RS06585 at 705.189 kb on + strand, within HMPREF1078_RS06585 at 705.195 kb on + strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.196 kb on - strand, within HMPREF1078_RS06585 at 705.199 kb on + strand, within HMPREF1078_RS06585 at 705.200 kb on - strand, within HMPREF1078_RS06585 at 705.200 kb on - strand, within HMPREF1078_RS06585 at 705.229 kb on + strand, within HMPREF1078_RS06585 at 705.229 kb on + strand, within HMPREF1078_RS06585 at 705.229 kb on + strand, within HMPREF1078_RS06585 at 705.259 kb on - strand at 705.267 kb on + strand at 705.267 kb on + strand at 705.275 kb on + strand at 705.275 kb on + strand at 705.276 kb on - strand at 705.276 kb on - strand at 705.282 kb on - strand at 705.286 kb on + strand at 705.287 kb on - strand at 705.293 kb on + strand at 705.294 kb on - strand at 705.297 kb on + strand at 705.383 kb on - strand at 705.441 kb on - strand at 705.449 kb on - strand at 705.464 kb on - strand at 705.481 kb on + strand at 705.482 kb on - strand at 705.482 kb on - strand at 705.482 kb on - strand at 705.484 kb on - strand at 705.484 kb on - strand at 705.485 kb on + strand at 705.485 kb on + strand at 705.485 kb on + strand at 705.485 kb on + strand at 705.486 kb on - strand at 705.486 kb on - strand at 705.486 kb on - strand at 705.486 kb on - strand at 705.503 kb on + strand at 705.504 kb on - strand at 705.508 kb on + strand at 705.509 kb on - strand at 705.574 kb on - strand at 705.785 kb on + strand, within HMPREF1078_RS06590 at 705.925 kb on - strand, within HMPREF1078_RS06590 at 705.934 kb on + strand, within HMPREF1078_RS06590 at 705.934 kb on + strand, within HMPREF1078_RS06590 at 706.080 kb on - strand, within HMPREF1078_RS06590 at 706.121 kb on + strand, within HMPREF1078_RS06590 at 706.121 kb on + strand, within HMPREF1078_RS06590 at 706.122 kb on - strand, within HMPREF1078_RS06590 at 706.246 kb on + strand, within HMPREF1078_RS06590 at 706.263 kb on - strand, within HMPREF1078_RS06590 at 706.263 kb on - strand, within HMPREF1078_RS06590 at 706.263 kb on - strand, within HMPREF1078_RS06590 at 706.274 kb on + strand, within HMPREF1078_RS06590 at 706.275 kb on - strand, within HMPREF1078_RS06590 at 706.275 kb on - strand, within HMPREF1078_RS06590 at 706.275 kb on - strand, within HMPREF1078_RS06590 at 706.297 kb on + strand, within HMPREF1078_RS06590 at 706.445 kb on + strand, within HMPREF1078_RS06590 at 706.453 kb on + strand, within HMPREF1078_RS06590 at 706.454 kb on - strand, within HMPREF1078_RS06590 at 706.638 kb on - strand, within HMPREF1078_RS06590 at 706.673 kb on - strand, within HMPREF1078_RS06590 at 706.687 kb on - strand, within HMPREF1078_RS06590 at 706.816 kb on + strand, within HMPREF1078_RS06590 at 707.022 kb on + strand at 707.072 kb on + strand at 707.073 kb on - strand at 707.074 kb on + strand at 707.074 kb on + strand at 707.074 kb on + strand at 707.074 kb on + strand at 707.095 kb on + strand at 707.095 kb on + strand at 707.095 kb on + strand at 707.096 kb on - strand at 707.106 kb on + strand at 707.106 kb on + strand at 707.107 kb on - strand at 707.107 kb on - strand at 707.107 kb on - strand at 707.107 kb on - strand at 707.110 kb on + strand at 707.110 kb on + strand at 707.111 kb on - strand at 707.111 kb on - strand at 707.167 kb on + strand at 707.168 kb on - strand at 707.175 kb on + strand at 707.175 kb on + strand at 707.175 kb on + strand at 707.175 kb on + strand at 707.176 kb on - strand at 707.176 kb on - strand at 707.178 kb on + strand at 707.191 kb on + strand at 707.276 kb on + strand, within HMPREF1078_RS06595 at 707.308 kb on + strand, within HMPREF1078_RS06595 at 707.308 kb on + strand, within HMPREF1078_RS06595 at 707.309 kb on - strand, within HMPREF1078_RS06595 at 707.309 kb on - strand, within HMPREF1078_RS06595 at 707.313 kb on + strand, within HMPREF1078_RS06595 at 707.340 kb on + strand, within HMPREF1078_RS06595 at 707.433 kb on + strand, within HMPREF1078_RS06595 at 707.442 kb on - strand, within HMPREF1078_RS06595 at 707.465 kb on - strand, within HMPREF1078_RS06595 at 707.472 kb on + strand, within HMPREF1078_RS06595 at 707.568 kb on - strand, within HMPREF1078_RS06595 at 707.622 kb on + strand, within HMPREF1078_RS06595 at 707.711 kb on + strand, within HMPREF1078_RS06595 at 707.712 kb on - strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.713 kb on + strand, within HMPREF1078_RS06595 at 707.714 kb on - strand, within HMPREF1078_RS06595 at 707.729 kb on + strand, within HMPREF1078_RS06595 at 707.784 kb on + strand, within HMPREF1078_RS06595 at 707.784 kb on + strand, within HMPREF1078_RS06595 at 707.819 kb on + strand, within HMPREF1078_RS06595 at 707.872 kb on - strand, within HMPREF1078_RS06595 at 707.884 kb on - strand, within HMPREF1078_RS06595 at 707.899 kb on - strand, within HMPREF1078_RS06595
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3 remove 704,560 - +0.6 704,637 + -3.6 704,637 + +2.9 704,759 + +1.3 704,759 + -2.4 704,759 + -1.6 704,760 - -0.4 704,760 - +0.7 704,760 - -0.8 704,787 + -2.2 704,926 - HMPREF1078_RS06585 0.32 -0.9 704,975 + HMPREF1078_RS06585 0.41 -1.5 705,000 + HMPREF1078_RS06585 0.46 -0.1 705,000 + HMPREF1078_RS06585 0.46 +1.0 705,012 + HMPREF1078_RS06585 0.48 -0.1 705,013 - HMPREF1078_RS06585 0.48 -1.6 705,050 + HMPREF1078_RS06585 0.55 +0.1 705,114 + HMPREF1078_RS06585 0.67 +1.2 705,114 + HMPREF1078_RS06585 0.67 -1.6 705,115 - HMPREF1078_RS06585 0.67 +2.0 705,115 - HMPREF1078_RS06585 0.67 -1.0 705,119 - HMPREF1078_RS06585 0.68 -1.9 705,189 + HMPREF1078_RS06585 0.81 +0.6 705,195 + HMPREF1078_RS06585 0.82 -0.7 705,196 - HMPREF1078_RS06585 0.83 +0.8 705,196 - HMPREF1078_RS06585 0.83 +1.9 705,196 - HMPREF1078_RS06585 0.83 +1.1 705,196 - HMPREF1078_RS06585 0.83 +0.3 705,199 + HMPREF1078_RS06585 0.83 -0.1 705,200 - HMPREF1078_RS06585 0.83 +0.6 705,200 - HMPREF1078_RS06585 0.83 -1.1 705,229 + HMPREF1078_RS06585 0.89 +2.5 705,229 + HMPREF1078_RS06585 0.89 +2.1 705,229 + HMPREF1078_RS06585 0.89 +0.6 705,259 - -1.1 705,267 + -1.3 705,267 + +0.9 705,275 + -0.7 705,275 + +0.8 705,276 - +0.7 705,276 - -3.4 705,282 - -1.1 705,286 + +1.3 705,287 - -0.1 705,293 + -0.9 705,294 - -0.6 705,297 + +1.2 705,383 - +0.6 705,441 - -0.3 705,449 - -1.9 705,464 - -3.1 705,481 + -2.6 705,482 - -0.8 705,482 - +0.8 705,482 - +0.9 705,484 - +1.2 705,484 - -0.2 705,485 + -0.9 705,485 + -0.1 705,485 + -0.9 705,485 + +0.1 705,486 - -2.0 705,486 - -0.3 705,486 - +0.4 705,486 - +0.3 705,503 + +1.5 705,504 - -0.3 705,508 + +0.3 705,509 - -0.8 705,574 - +0.4 705,785 + HMPREF1078_RS06590 0.18 -1.4 705,925 - HMPREF1078_RS06590 0.27 -1.4 705,934 + HMPREF1078_RS06590 0.28 +0.5 705,934 + HMPREF1078_RS06590 0.28 -1.0 706,080 - HMPREF1078_RS06590 0.37 -0.7 706,121 + HMPREF1078_RS06590 0.40 +1.5 706,121 + HMPREF1078_RS06590 0.40 +0.2 706,122 - HMPREF1078_RS06590 0.40 -0.4 706,246 + HMPREF1078_RS06590 0.48 +2.1 706,263 - HMPREF1078_RS06590 0.49 -1.3 706,263 - HMPREF1078_RS06590 0.49 -2.7 706,263 - HMPREF1078_RS06590 0.49 -0.7 706,274 + HMPREF1078_RS06590 0.50 -0.0 706,275 - HMPREF1078_RS06590 0.50 -0.4 706,275 - HMPREF1078_RS06590 0.50 -1.0 706,275 - HMPREF1078_RS06590 0.50 +0.5 706,297 + HMPREF1078_RS06590 0.51 +1.9 706,445 + HMPREF1078_RS06590 0.61 -1.3 706,453 + HMPREF1078_RS06590 0.61 -0.3 706,454 - HMPREF1078_RS06590 0.61 -2.3 706,638 - HMPREF1078_RS06590 0.73 +0.9 706,673 - HMPREF1078_RS06590 0.75 -0.2 706,687 - HMPREF1078_RS06590 0.76 -0.6 706,816 + HMPREF1078_RS06590 0.85 -0.2 707,022 + -0.1 707,072 + -2.9 707,073 - -1.0 707,074 + -1.5 707,074 + -0.3 707,074 + +0.8 707,074 + -0.9 707,095 + -0.7 707,095 + +1.2 707,095 + -1.4 707,096 - -1.1 707,106 + +0.2 707,106 + +0.9 707,107 - +0.4 707,107 - +1.3 707,107 - +0.8 707,107 - -2.1 707,110 + +0.2 707,110 + -0.3 707,111 - -1.9 707,111 - +0.0 707,167 + -3.8 707,168 - +0.3 707,175 + -3.1 707,175 + -4.0 707,175 + -0.9 707,175 + +0.2 707,176 - -0.3 707,176 - +2.5 707,178 + -0.0 707,191 + -3.4 707,276 + HMPREF1078_RS06595 0.11 +0.1 707,308 + HMPREF1078_RS06595 0.14 +2.5 707,308 + HMPREF1078_RS06595 0.14 +0.9 707,309 - HMPREF1078_RS06595 0.14 -1.7 707,309 - HMPREF1078_RS06595 0.14 -2.9 707,313 + HMPREF1078_RS06595 0.14 +1.1 707,340 + HMPREF1078_RS06595 0.17 -0.4 707,433 + HMPREF1078_RS06595 0.26 -2.5 707,442 - HMPREF1078_RS06595 0.27 -1.1 707,465 - HMPREF1078_RS06595 0.29 -0.6 707,472 + HMPREF1078_RS06595 0.30 +0.6 707,568 - HMPREF1078_RS06595 0.39 +0.8 707,622 + HMPREF1078_RS06595 0.44 -2.3 707,711 + HMPREF1078_RS06595 0.53 -0.3 707,712 - HMPREF1078_RS06595 0.53 -1.0 707,713 + HMPREF1078_RS06595 0.53 -0.1 707,713 + HMPREF1078_RS06595 0.53 -1.4 707,713 + HMPREF1078_RS06595 0.53 -2.1 707,713 + HMPREF1078_RS06595 0.53 -2.7 707,713 + HMPREF1078_RS06595 0.53 -1.7 707,714 - HMPREF1078_RS06595 0.53 -0.4 707,729 + HMPREF1078_RS06595 0.54 -1.3 707,784 + HMPREF1078_RS06595 0.60 -0.7 707,784 + HMPREF1078_RS06595 0.60 +0.5 707,819 + HMPREF1078_RS06595 0.63 +1.3 707,872 - HMPREF1078_RS06595 0.68 +1.4 707,884 - HMPREF1078_RS06595 0.69 -0.8 707,899 - HMPREF1078_RS06595 0.71 +0.4
Or see this region's nucleotide sequence