Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01810 and HMPREF1078_RS01815 are separated by 20 nucleotides HMPREF1078_RS01815 and HMPREF1078_RS01820 are separated by 83 nucleotides HMPREF1078_RS01820 and HMPREF1078_RS01825 overlap by 8 nucleotides
HMPREF1078_RS01810: HMPREF1078_RS01810 - signal recognition particle-docking protein FtsY, at 452,524 to 453,477
_RS01810
HMPREF1078_RS01815: HMPREF1078_RS01815 - 30S ribosomal protein S12 methylthiotransferase RimO, at 453,498 to 454,793
_RS01815
HMPREF1078_RS01820: HMPREF1078_RS01820 - HU family DNA-binding protein, at 454,877 to 455,167
_RS01820
HMPREF1078_RS01825: HMPREF1078_RS01825 - HU family DNA-binding protein, at 455,160 to 456,314
_RS01825
Position (kb) 453
454
455 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 453.455 kb on + strand at 453.487 kb on + strand at 453.487 kb on + strand at 453.487 kb on + strand at 453.488 kb on - strand at 453.492 kb on + strand at 453.495 kb on + strand at 453.495 kb on + strand at 453.495 kb on + strand at 453.495 kb on + strand at 453.496 kb on - strand at 453.496 kb on - strand at 453.496 kb on - strand at 453.496 kb on - strand at 453.496 kb on - strand at 453.496 kb on - strand at 453.496 kb on - strand at 453.497 kb on + strand at 453.497 kb on + strand at 453.497 kb on + strand at 453.497 kb on + strand at 453.497 kb on + strand at 453.498 kb on - strand at 453.510 kb on - strand at 453.514 kb on + strand at 453.514 kb on + strand at 453.514 kb on + strand at 453.514 kb on + strand at 453.515 kb on - strand at 453.515 kb on - strand at 453.518 kb on + strand at 453.518 kb on + strand at 453.519 kb on - strand at 453.521 kb on + strand at 453.521 kb on + strand at 453.524 kb on - strand at 453.566 kb on + strand at 453.567 kb on - strand at 453.567 kb on - strand at 453.594 kb on - strand at 453.644 kb on + strand, within HMPREF1078_RS01815 at 453.686 kb on + strand, within HMPREF1078_RS01815 at 453.686 kb on + strand, within HMPREF1078_RS01815 at 453.687 kb on - strand, within HMPREF1078_RS01815 at 453.692 kb on - strand, within HMPREF1078_RS01815 at 453.851 kb on + strand, within HMPREF1078_RS01815 at 453.907 kb on - strand, within HMPREF1078_RS01815 at 453.912 kb on + strand, within HMPREF1078_RS01815 at 453.912 kb on + strand, within HMPREF1078_RS01815 at 453.913 kb on - strand, within HMPREF1078_RS01815 at 453.941 kb on + strand, within HMPREF1078_RS01815 at 453.951 kb on + strand, within HMPREF1078_RS01815 at 453.951 kb on + strand, within HMPREF1078_RS01815 at 453.952 kb on - strand, within HMPREF1078_RS01815 at 454.077 kb on + strand, within HMPREF1078_RS01815 at 454.077 kb on + strand, within HMPREF1078_RS01815 at 454.077 kb on + strand, within HMPREF1078_RS01815 at 454.077 kb on + strand, within HMPREF1078_RS01815 at 454.078 kb on - strand, within HMPREF1078_RS01815 at 454.080 kb on + strand, within HMPREF1078_RS01815 at 454.081 kb on - strand, within HMPREF1078_RS01815 at 454.095 kb on + strand, within HMPREF1078_RS01815 at 454.096 kb on - strand, within HMPREF1078_RS01815 at 454.170 kb on + strand, within HMPREF1078_RS01815 at 454.171 kb on - strand, within HMPREF1078_RS01815 at 454.176 kb on + strand, within HMPREF1078_RS01815 at 454.239 kb on + strand, within HMPREF1078_RS01815 at 454.240 kb on - strand, within HMPREF1078_RS01815 at 454.240 kb on - strand, within HMPREF1078_RS01815 at 454.240 kb on - strand, within HMPREF1078_RS01815 at 454.263 kb on - strand, within HMPREF1078_RS01815 at 454.317 kb on + strand, within HMPREF1078_RS01815 at 454.317 kb on + strand, within HMPREF1078_RS01815 at 454.318 kb on - strand, within HMPREF1078_RS01815 at 454.318 kb on - strand, within HMPREF1078_RS01815 at 454.318 kb on - strand, within HMPREF1078_RS01815 at 454.454 kb on + strand, within HMPREF1078_RS01815 at 454.470 kb on + strand, within HMPREF1078_RS01815 at 454.471 kb on - strand, within HMPREF1078_RS01815 at 454.491 kb on + strand, within HMPREF1078_RS01815 at 454.492 kb on - strand, within HMPREF1078_RS01815 at 454.492 kb on - strand, within HMPREF1078_RS01815 at 454.506 kb on + strand, within HMPREF1078_RS01815 at 454.506 kb on + strand, within HMPREF1078_RS01815 at 454.507 kb on - strand, within HMPREF1078_RS01815 at 454.562 kb on + strand, within HMPREF1078_RS01815 at 454.564 kb on + strand, within HMPREF1078_RS01815 at 454.564 kb on + strand, within HMPREF1078_RS01815 at 454.565 kb on - strand, within HMPREF1078_RS01815 at 454.612 kb on + strand, within HMPREF1078_RS01815 at 454.612 kb on + strand, within HMPREF1078_RS01815 at 454.612 kb on + strand, within HMPREF1078_RS01815 at 454.613 kb on - strand, within HMPREF1078_RS01815 at 454.613 kb on - strand, within HMPREF1078_RS01815 at 454.737 kb on + strand at 454.787 kb on - strand at 454.791 kb on + strand at 454.801 kb on + strand at 454.802 kb on - strand at 454.843 kb on - strand at 454.843 kb on - strand at 454.845 kb on + strand at 454.846 kb on - strand at 454.847 kb on + strand at 454.847 kb on + strand at 454.847 kb on + strand at 454.847 kb on + strand at 454.856 kb on - strand at 454.856 kb on - strand at 454.856 kb on - strand at 454.860 kb on + strand at 454.860 kb on + strand at 454.860 kb on + strand at 454.861 kb on - strand at 454.915 kb on + strand, within HMPREF1078_RS01820 at 455.000 kb on + strand, within HMPREF1078_RS01820 at 455.001 kb on + strand, within HMPREF1078_RS01820 at 455.001 kb on + strand, within HMPREF1078_RS01820 at 455.002 kb on - strand, within HMPREF1078_RS01820 at 455.002 kb on - strand, within HMPREF1078_RS01820 at 455.002 kb on - strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.082 kb on - strand, within HMPREF1078_RS01820 at 455.086 kb on - strand, within HMPREF1078_RS01820 at 455.142 kb on + strand at 455.143 kb on - strand at 455.152 kb on - strand at 455.152 kb on - strand at 455.165 kb on + strand at 455.166 kb on - strand at 455.209 kb on - strand at 455.210 kb on + strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.216 kb on + strand at 455.217 kb on - strand at 455.217 kb on - strand at 455.228 kb on + strand at 455.229 kb on - strand at 455.229 kb on - strand at 455.280 kb on + strand, within HMPREF1078_RS01825 at 455.281 kb on - strand, within HMPREF1078_RS01825 at 455.281 kb on - strand, within HMPREF1078_RS01825 at 455.288 kb on + strand, within HMPREF1078_RS01825 at 455.289 kb on - strand, within HMPREF1078_RS01825 at 455.322 kb on - strand, within HMPREF1078_RS01825 at 455.322 kb on - strand, within HMPREF1078_RS01825 at 455.363 kb on + strand, within HMPREF1078_RS01825 at 455.394 kb on + strand, within HMPREF1078_RS01825 at 455.394 kb on + strand, within HMPREF1078_RS01825 at 455.395 kb on - strand, within HMPREF1078_RS01825 at 455.395 kb on - strand, within HMPREF1078_RS01825 at 455.441 kb on + strand, within HMPREF1078_RS01825 at 455.442 kb on - strand, within HMPREF1078_RS01825 at 455.493 kb on - strand, within HMPREF1078_RS01825 at 455.499 kb on - strand, within HMPREF1078_RS01825 at 455.527 kb on + strand, within HMPREF1078_RS01825 at 455.528 kb on - strand, within HMPREF1078_RS01825 at 455.700 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3 remove 453,455 + +1.1 453,487 + +0.4 453,487 + -0.3 453,487 + -0.2 453,488 - -2.8 453,492 + -0.0 453,495 + -0.7 453,495 + -1.0 453,495 + +1.9 453,495 + -0.5 453,496 - -1.2 453,496 - +0.5 453,496 - +0.1 453,496 - +0.3 453,496 - -0.3 453,496 - -1.0 453,496 - -3.0 453,497 + +0.4 453,497 + -0.0 453,497 + -0.7 453,497 + +0.1 453,497 + -0.6 453,498 - +1.1 453,510 - -0.5 453,514 + +1.1 453,514 + +0.4 453,514 + -0.2 453,514 + +0.5 453,515 - -0.3 453,515 - -0.7 453,518 + -0.2 453,518 + +2.7 453,519 - -0.1 453,521 + -0.1 453,521 + -1.9 453,524 - +0.1 453,566 + -1.2 453,567 - -1.8 453,567 - -1.4 453,594 - -2.1 453,644 + HMPREF1078_RS01815 0.11 -0.9 453,686 + HMPREF1078_RS01815 0.15 +0.1 453,686 + HMPREF1078_RS01815 0.15 -1.1 453,687 - HMPREF1078_RS01815 0.15 +0.2 453,692 - HMPREF1078_RS01815 0.15 -0.1 453,851 + HMPREF1078_RS01815 0.27 -0.2 453,907 - HMPREF1078_RS01815 0.32 +1.1 453,912 + HMPREF1078_RS01815 0.32 +1.5 453,912 + HMPREF1078_RS01815 0.32 -1.7 453,913 - HMPREF1078_RS01815 0.32 -2.4 453,941 + HMPREF1078_RS01815 0.34 -0.0 453,951 + HMPREF1078_RS01815 0.35 +0.3 453,951 + HMPREF1078_RS01815 0.35 -0.3 453,952 - HMPREF1078_RS01815 0.35 +0.1 454,077 + HMPREF1078_RS01815 0.45 -0.5 454,077 + HMPREF1078_RS01815 0.45 -0.1 454,077 + HMPREF1078_RS01815 0.45 -0.9 454,077 + HMPREF1078_RS01815 0.45 -0.2 454,078 - HMPREF1078_RS01815 0.45 -2.7 454,080 + HMPREF1078_RS01815 0.45 -0.3 454,081 - HMPREF1078_RS01815 0.45 -2.1 454,095 + HMPREF1078_RS01815 0.46 -0.5 454,096 - HMPREF1078_RS01815 0.46 -1.4 454,170 + HMPREF1078_RS01815 0.52 -0.9 454,171 - HMPREF1078_RS01815 0.52 +1.1 454,176 + HMPREF1078_RS01815 0.52 +0.2 454,239 + HMPREF1078_RS01815 0.57 +0.1 454,240 - HMPREF1078_RS01815 0.57 +1.1 454,240 - HMPREF1078_RS01815 0.57 +1.1 454,240 - HMPREF1078_RS01815 0.57 +1.1 454,263 - HMPREF1078_RS01815 0.59 +0.8 454,317 + HMPREF1078_RS01815 0.63 -0.7 454,317 + HMPREF1078_RS01815 0.63 +1.1 454,318 - HMPREF1078_RS01815 0.63 +0.5 454,318 - HMPREF1078_RS01815 0.63 -2.1 454,318 - HMPREF1078_RS01815 0.63 -0.9 454,454 + HMPREF1078_RS01815 0.74 -1.3 454,470 + HMPREF1078_RS01815 0.75 -0.2 454,471 - HMPREF1078_RS01815 0.75 +0.5 454,491 + HMPREF1078_RS01815 0.77 +0.4 454,492 - HMPREF1078_RS01815 0.77 -1.2 454,492 - HMPREF1078_RS01815 0.77 -0.9 454,506 + HMPREF1078_RS01815 0.78 -1.5 454,506 + HMPREF1078_RS01815 0.78 -0.5 454,507 - HMPREF1078_RS01815 0.78 +0.1 454,562 + HMPREF1078_RS01815 0.82 +0.5 454,564 + HMPREF1078_RS01815 0.82 -0.8 454,564 + HMPREF1078_RS01815 0.82 +0.1 454,565 - HMPREF1078_RS01815 0.82 -0.4 454,612 + HMPREF1078_RS01815 0.86 -2.1 454,612 + HMPREF1078_RS01815 0.86 +1.2 454,612 + HMPREF1078_RS01815 0.86 -3.1 454,613 - HMPREF1078_RS01815 0.86 -0.3 454,613 - HMPREF1078_RS01815 0.86 -1.2 454,737 + -1.5 454,787 - -0.8 454,791 + -0.6 454,801 + -1.4 454,802 - -1.7 454,843 - +1.1 454,843 - -2.7 454,845 + -1.4 454,846 - -0.5 454,847 + -0.0 454,847 + +0.8 454,847 + -1.5 454,847 + -0.1 454,856 - +1.6 454,856 - -0.4 454,856 - -0.4 454,860 + -1.0 454,860 + -1.0 454,860 + -1.8 454,861 - +0.7 454,915 + HMPREF1078_RS01820 0.13 -1.2 455,000 + HMPREF1078_RS01820 0.42 -1.4 455,001 + HMPREF1078_RS01820 0.43 +0.9 455,001 + HMPREF1078_RS01820 0.43 -1.2 455,002 - HMPREF1078_RS01820 0.43 -0.6 455,002 - HMPREF1078_RS01820 0.43 -0.7 455,002 - HMPREF1078_RS01820 0.43 +1.5 455,003 + HMPREF1078_RS01820 0.43 +0.6 455,003 + HMPREF1078_RS01820 0.43 -0.3 455,003 + HMPREF1078_RS01820 0.43 -3.9 455,003 + HMPREF1078_RS01820 0.43 -1.0 455,003 + HMPREF1078_RS01820 0.43 -1.4 455,004 - HMPREF1078_RS01820 0.44 +1.5 455,004 - HMPREF1078_RS01820 0.44 -1.1 455,004 - HMPREF1078_RS01820 0.44 -1.2 455,004 - HMPREF1078_RS01820 0.44 +1.1 455,082 - HMPREF1078_RS01820 0.70 -0.3 455,086 - HMPREF1078_RS01820 0.72 -0.7 455,142 + +0.2 455,143 - +0.4 455,152 - +1.5 455,152 - +0.5 455,165 + +0.1 455,166 - -2.2 455,209 - -0.5 455,210 + +0.9 455,211 - +2.3 455,211 - -1.2 455,211 - +1.3 455,211 - -2.0 455,211 - +0.1 455,216 + +1.1 455,217 - -1.8 455,217 - +1.7 455,228 + -1.4 455,229 - +0.1 455,229 - +0.5 455,280 + HMPREF1078_RS01825 0.10 +1.3 455,281 - HMPREF1078_RS01825 0.10 +1.1 455,281 - HMPREF1078_RS01825 0.10 +0.6 455,288 + HMPREF1078_RS01825 0.11 -0.5 455,289 - HMPREF1078_RS01825 0.11 -0.0 455,322 - HMPREF1078_RS01825 0.14 -0.8 455,322 - HMPREF1078_RS01825 0.14 -0.9 455,363 + HMPREF1078_RS01825 0.18 -0.4 455,394 + HMPREF1078_RS01825 0.20 -1.5 455,394 + HMPREF1078_RS01825 0.20 -1.0 455,395 - HMPREF1078_RS01825 0.20 -0.9 455,395 - HMPREF1078_RS01825 0.20 -0.2 455,441 + HMPREF1078_RS01825 0.24 -0.8 455,442 - HMPREF1078_RS01825 0.24 -1.3 455,493 - HMPREF1078_RS01825 0.29 +0.7 455,499 - HMPREF1078_RS01825 0.29 -0.1 455,527 + HMPREF1078_RS01825 0.32 +1.2 455,528 - HMPREF1078_RS01825 0.32 -3.0 455,700 - HMPREF1078_RS01825 0.47 +0.5 455,733 - HMPREF1078_RS01825 0.50 +1.6 455,733 - HMPREF1078_RS01825 0.50 -1.6
Or see this region's nucleotide sequence