Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00735 and HMPREF1078_RS00740 are separated by 27 nucleotides HMPREF1078_RS00740 and HMPREF1078_RS00745 are separated by 7 nucleotides
HMPREF1078_RS00735: HMPREF1078_RS00735 - glycerol kinase GlpK, at 173,287 to 174,789
_RS00735
HMPREF1078_RS00740: HMPREF1078_RS00740 - polysaccharide lyase family 8 super-sandwich domain-containing protein, at 174,817 to 177,615
_RS00740
HMPREF1078_RS00745: HMPREF1078_RS00745 - dihydroorotase, at 177,623 to 178,963
_RS00745
Position (kb) 174
175
176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.830 kb on - strand, within HMPREF1078_RS00735 at 173.842 kb on - strand, within HMPREF1078_RS00735 at 173.878 kb on - strand, within HMPREF1078_RS00735 at 173.952 kb on + strand, within HMPREF1078_RS00735 at 174.055 kb on - strand, within HMPREF1078_RS00735 at 174.055 kb on - strand, within HMPREF1078_RS00735 at 174.082 kb on + strand, within HMPREF1078_RS00735 at 174.083 kb on - strand, within HMPREF1078_RS00735 at 174.099 kb on + strand, within HMPREF1078_RS00735 at 174.099 kb on + strand, within HMPREF1078_RS00735 at 174.135 kb on + strand, within HMPREF1078_RS00735 at 174.187 kb on + strand, within HMPREF1078_RS00735 at 174.317 kb on - strand, within HMPREF1078_RS00735 at 174.352 kb on + strand, within HMPREF1078_RS00735 at 174.364 kb on + strand, within HMPREF1078_RS00735 at 174.406 kb on - strand, within HMPREF1078_RS00735 at 174.438 kb on + strand, within HMPREF1078_RS00735 at 174.438 kb on + strand, within HMPREF1078_RS00735 at 174.439 kb on - strand, within HMPREF1078_RS00735 at 174.454 kb on + strand, within HMPREF1078_RS00735 at 174.454 kb on + strand, within HMPREF1078_RS00735 at 174.454 kb on + strand, within HMPREF1078_RS00735 at 174.454 kb on + strand, within HMPREF1078_RS00735 at 174.485 kb on + strand, within HMPREF1078_RS00735 at 174.486 kb on - strand, within HMPREF1078_RS00735 at 174.486 kb on - strand, within HMPREF1078_RS00735 at 174.531 kb on + strand, within HMPREF1078_RS00735 at 174.693 kb on + strand at 174.693 kb on + strand at 174.693 kb on + strand at 174.693 kb on + strand at 174.694 kb on - strand at 174.694 kb on - strand at 174.793 kb on + strand at 174.793 kb on + strand at 174.806 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.809 kb on + strand at 174.810 kb on - strand at 174.810 kb on - strand at 174.810 kb on - strand at 174.810 kb on - strand at 174.810 kb on - strand at 174.812 kb on - strand at 174.812 kb on - strand at 174.812 kb on - strand at 174.812 kb on - strand at 174.814 kb on - strand at 174.814 kb on - strand at 174.814 kb on - strand at 174.831 kb on + strand at 174.920 kb on - strand at 174.920 kb on - strand at 174.920 kb on - strand at 174.934 kb on - strand at 174.934 kb on - strand at 174.981 kb on + strand at 174.981 kb on + strand at 174.983 kb on + strand at 174.983 kb on + strand at 174.984 kb on - strand at 174.984 kb on - strand at 175.001 kb on + strand at 175.036 kb on + strand at 175.036 kb on + strand at 175.066 kb on + strand at 175.068 kb on + strand at 175.068 kb on + strand at 175.069 kb on - strand at 175.107 kb on + strand, within HMPREF1078_RS00740 at 175.108 kb on - strand, within HMPREF1078_RS00740 at 175.111 kb on + strand, within HMPREF1078_RS00740 at 175.111 kb on + strand, within HMPREF1078_RS00740 at 175.111 kb on + strand, within HMPREF1078_RS00740 at 175.112 kb on - strand, within HMPREF1078_RS00740 at 175.112 kb on - strand, within HMPREF1078_RS00740 at 175.113 kb on + strand, within HMPREF1078_RS00740 at 175.172 kb on + strand, within HMPREF1078_RS00740 at 175.292 kb on - strand, within HMPREF1078_RS00740 at 175.292 kb on - strand, within HMPREF1078_RS00740 at 175.292 kb on - strand, within HMPREF1078_RS00740 at 175.338 kb on - strand, within HMPREF1078_RS00740 at 175.422 kb on + strand, within HMPREF1078_RS00740 at 175.423 kb on - strand, within HMPREF1078_RS00740 at 175.503 kb on + strand, within HMPREF1078_RS00740 at 175.504 kb on - strand, within HMPREF1078_RS00740 at 175.508 kb on + strand, within HMPREF1078_RS00740 at 175.528 kb on - strand, within HMPREF1078_RS00740 at 175.594 kb on + strand, within HMPREF1078_RS00740 at 175.595 kb on - strand, within HMPREF1078_RS00740 at 175.733 kb on - strand, within HMPREF1078_RS00740 at 175.733 kb on - strand, within HMPREF1078_RS00740 at 175.734 kb on + strand, within HMPREF1078_RS00740 at 175.735 kb on - strand, within HMPREF1078_RS00740 at 175.735 kb on - strand, within HMPREF1078_RS00740 at 175.781 kb on + strand, within HMPREF1078_RS00740 at 175.879 kb on + strand, within HMPREF1078_RS00740 at 175.880 kb on - strand, within HMPREF1078_RS00740 at 175.900 kb on - strand, within HMPREF1078_RS00740 at 175.900 kb on - strand, within HMPREF1078_RS00740 at 175.917 kb on + strand, within HMPREF1078_RS00740 at 176.041 kb on + strand, within HMPREF1078_RS00740 at 176.041 kb on + strand, within HMPREF1078_RS00740 at 176.044 kb on - strand, within HMPREF1078_RS00740 at 176.063 kb on - strand, within HMPREF1078_RS00740 at 176.064 kb on + strand, within HMPREF1078_RS00740 at 176.065 kb on - strand, within HMPREF1078_RS00740 at 176.065 kb on - strand, within HMPREF1078_RS00740 at 176.068 kb on + strand, within HMPREF1078_RS00740 at 176.068 kb on + strand, within HMPREF1078_RS00740 at 176.068 kb on + strand, within HMPREF1078_RS00740 at 176.069 kb on - strand, within HMPREF1078_RS00740 at 176.086 kb on + strand, within HMPREF1078_RS00740 at 176.087 kb on - strand, within HMPREF1078_RS00740 at 176.177 kb on - strand, within HMPREF1078_RS00740 at 176.306 kb on - strand, within HMPREF1078_RS00740 at 176.366 kb on + strand, within HMPREF1078_RS00740 at 176.366 kb on + strand, within HMPREF1078_RS00740 at 176.475 kb on + strand, within HMPREF1078_RS00740 at 176.487 kb on + strand, within HMPREF1078_RS00740 at 176.488 kb on - strand, within HMPREF1078_RS00740 at 176.495 kb on + strand, within HMPREF1078_RS00740 at 176.510 kb on - strand, within HMPREF1078_RS00740 at 176.563 kb on + strand, within HMPREF1078_RS00740 at 176.563 kb on + strand, within HMPREF1078_RS00740 at 176.563 kb on + strand, within HMPREF1078_RS00740 at 176.563 kb on + strand, within HMPREF1078_RS00740 at 176.580 kb on - strand, within HMPREF1078_RS00740 at 176.595 kb on + strand, within HMPREF1078_RS00740 at 176.595 kb on + strand, within HMPREF1078_RS00740 at 176.603 kb on - strand, within HMPREF1078_RS00740 at 176.641 kb on + strand, within HMPREF1078_RS00740 at 176.661 kb on + strand, within HMPREF1078_RS00740 at 176.755 kb on + strand, within HMPREF1078_RS00740 at 176.767 kb on + strand, within HMPREF1078_RS00740 at 176.783 kb on + strand, within HMPREF1078_RS00740 at 176.830 kb on + strand, within HMPREF1078_RS00740 at 176.830 kb on + strand, within HMPREF1078_RS00740 at 176.830 kb on + strand, within HMPREF1078_RS00740 at 176.831 kb on - strand, within HMPREF1078_RS00740 at 176.831 kb on - strand, within HMPREF1078_RS00740 at 176.833 kb on - strand, within HMPREF1078_RS00740 at 177.137 kb on - strand, within HMPREF1078_RS00740 at 177.145 kb on + strand, within HMPREF1078_RS00740 at 177.162 kb on + strand, within HMPREF1078_RS00740 at 177.162 kb on + strand, within HMPREF1078_RS00740 at 177.174 kb on + strand, within HMPREF1078_RS00740 at 177.256 kb on + strand, within HMPREF1078_RS00740 at 177.257 kb on - strand, within HMPREF1078_RS00740 at 177.257 kb on - strand, within HMPREF1078_RS00740 at 177.257 kb on - strand, within HMPREF1078_RS00740 at 177.259 kb on + strand, within HMPREF1078_RS00740 at 177.299 kb on - strand, within HMPREF1078_RS00740 at 177.299 kb on - strand, within HMPREF1078_RS00740 at 177.318 kb on + strand, within HMPREF1078_RS00740 at 177.318 kb on + strand, within HMPREF1078_RS00740 at 177.319 kb on - strand, within HMPREF1078_RS00740 at 177.432 kb on + strand at 177.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3 remove 173,830 - HMPREF1078_RS00735 0.36 -1.8 173,842 - HMPREF1078_RS00735 0.37 +0.4 173,878 - HMPREF1078_RS00735 0.39 +1.6 173,952 + HMPREF1078_RS00735 0.44 +1.3 174,055 - HMPREF1078_RS00735 0.51 +0.6 174,055 - HMPREF1078_RS00735 0.51 -1.5 174,082 + HMPREF1078_RS00735 0.53 -0.9 174,083 - HMPREF1078_RS00735 0.53 +0.7 174,099 + HMPREF1078_RS00735 0.54 -1.0 174,099 + HMPREF1078_RS00735 0.54 -0.5 174,135 + HMPREF1078_RS00735 0.56 -0.2 174,187 + HMPREF1078_RS00735 0.60 +0.3 174,317 - HMPREF1078_RS00735 0.69 -0.4 174,352 + HMPREF1078_RS00735 0.71 +0.5 174,364 + HMPREF1078_RS00735 0.72 -0.9 174,406 - HMPREF1078_RS00735 0.74 -0.5 174,438 + HMPREF1078_RS00735 0.77 -2.2 174,438 + HMPREF1078_RS00735 0.77 -0.6 174,439 - HMPREF1078_RS00735 0.77 +1.2 174,454 + HMPREF1078_RS00735 0.78 -1.2 174,454 + HMPREF1078_RS00735 0.78 -1.9 174,454 + HMPREF1078_RS00735 0.78 -0.3 174,454 + HMPREF1078_RS00735 0.78 +0.4 174,485 + HMPREF1078_RS00735 0.80 -0.9 174,486 - HMPREF1078_RS00735 0.80 -0.9 174,486 - HMPREF1078_RS00735 0.80 +0.3 174,531 + HMPREF1078_RS00735 0.83 -0.5 174,693 + -0.9 174,693 + +0.7 174,693 + +0.9 174,693 + -0.9 174,694 - -0.8 174,694 - -0.9 174,793 + +2.3 174,793 + -1.2 174,806 + +0.6 174,809 + +0.1 174,809 + +0.0 174,809 + +0.1 174,809 + -0.6 174,809 + +0.4 174,809 + -1.1 174,809 + -0.3 174,809 + +0.5 174,809 + -2.1 174,810 - -0.2 174,810 - +0.1 174,810 - +1.1 174,810 - +1.3 174,810 - +0.1 174,812 - -0.7 174,812 - +0.9 174,812 - +0.7 174,812 - +1.1 174,814 - +0.7 174,814 - -0.2 174,814 - +0.8 174,831 + -2.4 174,920 - +0.5 174,920 - +0.1 174,920 - -0.3 174,934 - -0.1 174,934 - +0.3 174,981 + +1.7 174,981 + -1.3 174,983 + +0.5 174,983 + +0.7 174,984 - -1.4 174,984 - -0.9 175,001 + -0.4 175,036 + +0.8 175,036 + +2.0 175,066 + -1.5 175,068 + +1.6 175,068 + -2.1 175,069 - +1.1 175,107 + HMPREF1078_RS00740 0.10 -1.7 175,108 - HMPREF1078_RS00740 0.10 -0.3 175,111 + HMPREF1078_RS00740 0.11 -2.2 175,111 + HMPREF1078_RS00740 0.11 +1.0 175,111 + HMPREF1078_RS00740 0.11 -0.1 175,112 - HMPREF1078_RS00740 0.11 +0.1 175,112 - HMPREF1078_RS00740 0.11 +1.1 175,113 + HMPREF1078_RS00740 0.11 +0.3 175,172 + HMPREF1078_RS00740 0.13 +0.1 175,292 - HMPREF1078_RS00740 0.17 +0.4 175,292 - HMPREF1078_RS00740 0.17 +0.1 175,292 - HMPREF1078_RS00740 0.17 -1.2 175,338 - HMPREF1078_RS00740 0.19 -0.5 175,422 + HMPREF1078_RS00740 0.22 +0.5 175,423 - HMPREF1078_RS00740 0.22 -1.2 175,503 + HMPREF1078_RS00740 0.25 -0.5 175,504 - HMPREF1078_RS00740 0.25 +1.7 175,508 + HMPREF1078_RS00740 0.25 +0.7 175,528 - HMPREF1078_RS00740 0.25 -0.9 175,594 + HMPREF1078_RS00740 0.28 +1.3 175,595 - HMPREF1078_RS00740 0.28 +1.5 175,733 - HMPREF1078_RS00740 0.33 -1.7 175,733 - HMPREF1078_RS00740 0.33 +0.6 175,734 + HMPREF1078_RS00740 0.33 +1.5 175,735 - HMPREF1078_RS00740 0.33 +0.9 175,735 - HMPREF1078_RS00740 0.33 -0.3 175,781 + HMPREF1078_RS00740 0.34 +0.0 175,879 + HMPREF1078_RS00740 0.38 -2.3 175,880 - HMPREF1078_RS00740 0.38 +0.7 175,900 - HMPREF1078_RS00740 0.39 +2.1 175,900 - HMPREF1078_RS00740 0.39 -0.8 175,917 + HMPREF1078_RS00740 0.39 -3.7 176,041 + HMPREF1078_RS00740 0.44 +0.6 176,041 + HMPREF1078_RS00740 0.44 +0.6 176,044 - HMPREF1078_RS00740 0.44 +1.5 176,063 - HMPREF1078_RS00740 0.45 -0.2 176,064 + HMPREF1078_RS00740 0.45 -1.4 176,065 - HMPREF1078_RS00740 0.45 -0.6 176,065 - HMPREF1078_RS00740 0.45 +1.9 176,068 + HMPREF1078_RS00740 0.45 +1.1 176,068 + HMPREF1078_RS00740 0.45 -1.4 176,068 + HMPREF1078_RS00740 0.45 -0.5 176,069 - HMPREF1078_RS00740 0.45 +0.3 176,086 + HMPREF1078_RS00740 0.45 +0.8 176,087 - HMPREF1078_RS00740 0.45 -0.4 176,177 - HMPREF1078_RS00740 0.49 -1.9 176,306 - HMPREF1078_RS00740 0.53 +0.1 176,366 + HMPREF1078_RS00740 0.55 +1.4 176,366 + HMPREF1078_RS00740 0.55 +1.6 176,475 + HMPREF1078_RS00740 0.59 -2.2 176,487 + HMPREF1078_RS00740 0.60 -1.7 176,488 - HMPREF1078_RS00740 0.60 -0.5 176,495 + HMPREF1078_RS00740 0.60 +1.1 176,510 - HMPREF1078_RS00740 0.60 +0.9 176,563 + HMPREF1078_RS00740 0.62 +0.3 176,563 + HMPREF1078_RS00740 0.62 -0.5 176,563 + HMPREF1078_RS00740 0.62 -1.2 176,563 + HMPREF1078_RS00740 0.62 +2.0 176,580 - HMPREF1078_RS00740 0.63 +2.1 176,595 + HMPREF1078_RS00740 0.64 +1.3 176,595 + HMPREF1078_RS00740 0.64 -0.2 176,603 - HMPREF1078_RS00740 0.64 +0.4 176,641 + HMPREF1078_RS00740 0.65 +3.7 176,661 + HMPREF1078_RS00740 0.66 -1.5 176,755 + HMPREF1078_RS00740 0.69 -1.5 176,767 + HMPREF1078_RS00740 0.70 -0.7 176,783 + HMPREF1078_RS00740 0.70 +1.1 176,830 + HMPREF1078_RS00740 0.72 +0.9 176,830 + HMPREF1078_RS00740 0.72 +1.7 176,830 + HMPREF1078_RS00740 0.72 +1.1 176,831 - HMPREF1078_RS00740 0.72 +0.4 176,831 - HMPREF1078_RS00740 0.72 -0.5 176,833 - HMPREF1078_RS00740 0.72 -0.1 177,137 - HMPREF1078_RS00740 0.83 -0.5 177,145 + HMPREF1078_RS00740 0.83 +2.7 177,162 + HMPREF1078_RS00740 0.84 -0.2 177,162 + HMPREF1078_RS00740 0.84 -2.1 177,174 + HMPREF1078_RS00740 0.84 +0.0 177,256 + HMPREF1078_RS00740 0.87 +1.1 177,257 - HMPREF1078_RS00740 0.87 -1.0 177,257 - HMPREF1078_RS00740 0.87 +1.1 177,257 - HMPREF1078_RS00740 0.87 +1.1 177,259 + HMPREF1078_RS00740 0.87 -1.2 177,299 - HMPREF1078_RS00740 0.89 -2.4 177,299 - HMPREF1078_RS00740 0.89 +1.1 177,318 + HMPREF1078_RS00740 0.89 -1.5 177,318 + HMPREF1078_RS00740 0.89 +0.7 177,319 - HMPREF1078_RS00740 0.89 -1.5 177,432 + +0.7 177,576 - +0.5
Or see this region's nucleotide sequence