Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00530

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day3
120,095	-				-0.5
120,095	-				+1.5
120,100	+				-0.0
120,105	-				+0.5
120,111	+				+0.7
120,120	+				+1.3
120,120	+				+0.2
120,120	+				+0.5
120,121	-				+0.2
120,121	-				-0.5
120,122	+				-0.4
120,122	+				+1.2
120,122	+				+0.7
120,122	+				-2.8
120,139	+				+1.1
120,140	-				+0.1
120,142	+				+0.6
120,143	-				+0.9
120,158	-				+0.4
120,164	-				-2.1
120,229	+		HMPREF1078_RS00520	0.15	+0.8
120,241	+		HMPREF1078_RS00520	0.17	-0.7
120,242	-		HMPREF1078_RS00520	0.17	+0.8
120,243	+		HMPREF1078_RS00520	0.18	+0.5
120,243	+		HMPREF1078_RS00520	0.18	-1.1
120,301	+		HMPREF1078_RS00520	0.30	+0.0
120,302	-		HMPREF1078_RS00520	0.30	-1.5
120,302	-		HMPREF1078_RS00520	0.30	+1.8
120,311	-		HMPREF1078_RS00520	0.32	+2.2
120,313	-		HMPREF1078_RS00520	0.32	-0.9
120,313	-		HMPREF1078_RS00520	0.32	+0.3
120,325	+		HMPREF1078_RS00520	0.35	-0.6
120,326	-		HMPREF1078_RS00520	0.35	+0.5
120,345	+		HMPREF1078_RS00520	0.39	+0.4
120,345	+		HMPREF1078_RS00520	0.39	+0.8
120,352	+		HMPREF1078_RS00520	0.40	+0.9
120,352	+		HMPREF1078_RS00520	0.40	-1.4
120,364	-		HMPREF1078_RS00520	0.43	+1.6
120,365	-		HMPREF1078_RS00520	0.43	-1.5
120,401	+		HMPREF1078_RS00520	0.50	-0.0
120,402	-		HMPREF1078_RS00520	0.51	-1.9
120,402	-		HMPREF1078_RS00520	0.51	-0.1
120,440	-		HMPREF1078_RS00520	0.58	+0.1
120,440	-		HMPREF1078_RS00520	0.58	+2.7
120,446	-		HMPREF1078_RS00520	0.60	-0.2
120,446	-		HMPREF1078_RS00520	0.60	-0.5
120,451	+		HMPREF1078_RS00520	0.61	-1.1
120,451	+		HMPREF1078_RS00520	0.61	-0.9
120,456	+		HMPREF1078_RS00520	0.62	-0.9
120,457	-		HMPREF1078_RS00520	0.62	+0.9
120,462	+		HMPREF1078_RS00520	0.63	-2.1
120,463	-		HMPREF1078_RS00520	0.63	+1.2
120,463	-		HMPREF1078_RS00520	0.63	+0.9
120,509	-		HMPREF1078_RS00520	0.73	-1.3
120,509	-		HMPREF1078_RS00520	0.73	+0.3
120,509	-		HMPREF1078_RS00520	0.73	-2.5
120,519	+		HMPREF1078_RS00520	0.75	-0.2
120,548	-		HMPREF1078_RS00520	0.81	+0.7
120,557	+		HMPREF1078_RS00520	0.83	+0.1
120,557	+		HMPREF1078_RS00520	0.83	+2.7
120,558	-		HMPREF1078_RS00520	0.83	+2.3
120,559	+		HMPREF1078_RS00520	0.83	+0.9
120,559	+		HMPREF1078_RS00520	0.83	+1.7
120,560	-		HMPREF1078_RS00520	0.83	+0.1
120,560	-		HMPREF1078_RS00520	0.83	+0.1
120,561	+		HMPREF1078_RS00520	0.83	+0.4
120,561	+		HMPREF1078_RS00520	0.83	-0.3
120,562	-		HMPREF1078_RS00520	0.84	+0.1
120,562	-		HMPREF1078_RS00520	0.84	-1.0
120,562	-		HMPREF1078_RS00520	0.84	-0.1
120,562	-		HMPREF1078_RS00520	0.84	+1.3
120,709	+				-2.0
120,720	+				-1.2
120,720	+				+0.5
120,769	-		HMPREF1078_RS00525	0.22	-0.9
120,788	+		HMPREF1078_RS00525	0.32	-1.0
120,788	+		HMPREF1078_RS00525	0.32	-0.9
120,803	+		HMPREF1078_RS00525	0.40	-0.9
120,814	-		HMPREF1078_RS00525	0.46	-1.2
120,876	-		HMPREF1078_RS00525	0.80	-1.6
120,885	+		HMPREF1078_RS00525	0.84	-0.4
120,901	+				+0.5
120,914	+				-1.7
120,914	+				-0.9
120,947	+				+0.4
121,015	+				+2.4
121,030	-				-0.5
121,034	-				-2.4
121,036	+				-0.5
121,036	+				+1.1
121,037	-				-0.8
121,041	+				-0.2
121,041	+				-0.9
121,041	+				+3.1
121,044	-				+0.0
121,044	-				+0.3
121,045	+				+1.1
121,046	-				-0.0
121,046	-				-1.2
121,047	+				+1.7
121,047	+				-0.9
121,047	+				-2.1
121,048	-				-1.9
121,048	-				-2.4
121,048	-				+0.2
121,048	-				-0.3
121,048	-				-2.0
121,048	-				+0.2
121,048	-				+0.6
121,048	-				-0.3
121,048	-				-0.5
121,048	-				-1.5
121,056	-				-1.5
121,059	+				+1.3
121,059	+				+0.9
121,060	-				-1.5
121,060	-				-0.3
121,062	+				-1.7
121,065	+				+1.2
121,066	-				+0.3
121,067	+				-1.2
121,067	+				+0.6
121,067	+				-2.9
121,067	+				+0.2
121,068	-				-2.2
121,078	-				-0.3
121,118	-				-0.3
121,184	-		HMPREF1078_RS00530	0.14	+0.1
121,184	-		HMPREF1078_RS00530	0.14	+3.4
121,186	+		HMPREF1078_RS00530	0.14	+0.6
121,187	-		HMPREF1078_RS00530	0.15	+0.2
121,187	-		HMPREF1078_RS00530	0.15	+0.1
121,211	+		HMPREF1078_RS00530	0.18	-0.9
121,212	-		HMPREF1078_RS00530	0.18	-0.0
121,236	+		HMPREF1078_RS00530	0.22	+2.2
121,237	-		HMPREF1078_RS00530	0.22	-0.2
121,247	+		HMPREF1078_RS00530	0.24	+1.3
121,248	-		HMPREF1078_RS00530	0.24	+4.4
121,248	-		HMPREF1078_RS00530	0.24	-1.2
121,252	+		HMPREF1078_RS00530	0.24	-0.7
121,252	+		HMPREF1078_RS00530	0.24	+0.6
121,253	-		HMPREF1078_RS00530	0.25	+1.1
121,253	-		HMPREF1078_RS00530	0.25	-0.8
121,265	+		HMPREF1078_RS00530	0.26	+0.9
121,319	+		HMPREF1078_RS00530	0.35	+0.3
121,319	+		HMPREF1078_RS00530	0.35	-2.7
121,328	+		HMPREF1078_RS00530	0.36	+0.4
121,350	+		HMPREF1078_RS00530	0.39	-0.8
121,350	+		HMPREF1078_RS00530	0.39	+0.1
121,350	+		HMPREF1078_RS00530	0.39	+1.1
121,351	-		HMPREF1078_RS00530	0.40	-1.7
121,419	+		HMPREF1078_RS00530	0.50	-1.0
121,420	-		HMPREF1078_RS00530	0.50	+2.7
121,432	-		HMPREF1078_RS00530	0.52	-1.4
121,432	-		HMPREF1078_RS00530	0.52	+0.4
121,470	+		HMPREF1078_RS00530	0.58	-0.3
121,470	+		HMPREF1078_RS00530	0.58	-0.5
121,472	+		HMPREF1078_RS00530	0.58	+0.9
121,472	+		HMPREF1078_RS00530	0.58	+0.0
121,473	-		HMPREF1078_RS00530	0.58	+1.8
121,482	+		HMPREF1078_RS00530	0.60	-1.5
121,496	+		HMPREF1078_RS00530	0.62	+0.4
121,543	+		HMPREF1078_RS00530	0.69	+3.1
121,543	+		HMPREF1078_RS00530	0.69	-1.0
121,543	+		HMPREF1078_RS00530	0.69	-0.1
121,543	+		HMPREF1078_RS00530	0.69	+1.4
121,544	-		HMPREF1078_RS00530	0.69	-2.8
121,544	-		HMPREF1078_RS00530	0.69	-0.9
121,544	-		HMPREF1078_RS00530	0.69	-1.2
121,545	+		HMPREF1078_RS00530	0.69	-0.5
121,545	+		HMPREF1078_RS00530	0.69	+0.4
121,545	+		HMPREF1078_RS00530	0.69	+0.5
121,546	-		HMPREF1078_RS00530	0.69	+1.1
121,546	-		HMPREF1078_RS00530	0.69	-1.5
121,546	-		HMPREF1078_RS00530	0.69	+0.3
121,546	-		HMPREF1078_RS00530	0.69	+0.7
121,551	+		HMPREF1078_RS00530	0.70	+0.5
121,552	-		HMPREF1078_RS00530	0.70	-1.9
121,552	-		HMPREF1078_RS00530	0.70	-0.5
121,558	+		HMPREF1078_RS00530	0.71	-0.1
121,558	+		HMPREF1078_RS00530	0.71	-0.5
121,558	+		HMPREF1078_RS00530	0.71	-0.8
121,559	-		HMPREF1078_RS00530	0.71	+1.0
121,559	-		HMPREF1078_RS00530	0.71	+0.8
121,559	-		HMPREF1078_RS00530	0.71	+1.4
121,567	+		HMPREF1078_RS00530	0.73	-0.9
121,644	+		HMPREF1078_RS00530	0.84	-1.1
121,644	+		HMPREF1078_RS00530	0.84	-1.0
121,645	-		HMPREF1078_RS00530	0.85	+1.1
121,678	+		HMPREF1078_RS00530	0.90	-0.7
121,678	+		HMPREF1078_RS00530	0.90	-0.3
121,678	+		HMPREF1078_RS00530	0.90	-1.9
121,679	-		HMPREF1078_RS00530	0.90	+1.7
121,694	+				-0.9
121,703	+				+0.5
121,731	+				-2.8
121,769	+				+1.3
121,769	+				+1.1
121,769	+				+1.2
121,770	-				+0.4
121,770	-				-0.3
121,778	+				-1.3
121,793	+				-1.4
121,793	+				+0.9
121,794	-				-0.3
121,816	+				-0.5
121,864	+		HMPREF1078_RS00535	0.13	+0.5
121,865	-		HMPREF1078_RS00535	0.14	+1.3
121,875	+		HMPREF1078_RS00535	0.15	+0.8
121,875	+		HMPREF1078_RS00535	0.15	+0.1
121,875	+		HMPREF1078_RS00535	0.15	-0.5
121,876	-		HMPREF1078_RS00535	0.15	-2.4
121,876	-		HMPREF1078_RS00535	0.15	-0.6
121,876	-		HMPREF1078_RS00535	0.15	-1.0
121,898	+		HMPREF1078_RS00535	0.19	+0.9
121,899	-		HMPREF1078_RS00535	0.19	-3.4
121,965	+		HMPREF1078_RS00535	0.30	-1.5
121,965	+		HMPREF1078_RS00535	0.30	-0.6
121,968	+		HMPREF1078_RS00535	0.30	+0.1
121,969	-		HMPREF1078_RS00535	0.30	-0.6
121,969	-		HMPREF1078_RS00535	0.30	-0.4
121,973	-		HMPREF1078_RS00535	0.31	+0.4
121,990	+		HMPREF1078_RS00535	0.33	+1.4
122,000	+		HMPREF1078_RS00535	0.35	-0.9
122,000	+		HMPREF1078_RS00535	0.35	-1.7
122,000	+		HMPREF1078_RS00535	0.35	-0.3
122,000	+		HMPREF1078_RS00535	0.35	+1.1
122,001	-		HMPREF1078_RS00535	0.35	-0.8
122,001	-		HMPREF1078_RS00535	0.35	+0.3
122,007	+		HMPREF1078_RS00535	0.36	-0.3
122,008	-		HMPREF1078_RS00535	0.36	+0.0
122,012	+		HMPREF1078_RS00535	0.37	+0.8
122,013	-		HMPREF1078_RS00535	0.37	+0.6
122,021	+		HMPREF1078_RS00535	0.38	-0.2
122,022	-		HMPREF1078_RS00535	0.39	+2.7
122,025	+		HMPREF1078_RS00535	0.39	+3.7
122,025	+		HMPREF1078_RS00535	0.39	+0.7
122,025	+		HMPREF1078_RS00535	0.39	+0.7
122,025	+		HMPREF1078_RS00535	0.39	+1.4
122,025	+		HMPREF1078_RS00535	0.39	-0.1
122,026	-		HMPREF1078_RS00535	0.39	-1.3
122,026	-		HMPREF1078_RS00535	0.39	-1.7
122,026	-		HMPREF1078_RS00535	0.39	+1.1
122,057	+		HMPREF1078_RS00535	0.44	+0.0
122,058	-		HMPREF1078_RS00535	0.44	+3.6
122,058	-		HMPREF1078_RS00535	0.44	+1.2
122,090	+		HMPREF1078_RS00535	0.49	-3.1
122,131	+		HMPREF1078_RS00535	0.56	-0.4
122,131	+		HMPREF1078_RS00535	0.56	+0.5
122,132	-		HMPREF1078_RS00535	0.56	+1.1
122,132	-		HMPREF1078_RS00535	0.56	-2.7
122,132	-		HMPREF1078_RS00535	0.56	+2.8
122,157	+		HMPREF1078_RS00535	0.60	-0.5
122,158	-		HMPREF1078_RS00535	0.60	+1.5
122,174	-		HMPREF1078_RS00535	0.63	+0.1
122,174	-		HMPREF1078_RS00535	0.63	+1.5
122,184	+		HMPREF1078_RS00535	0.64	-1.5
122,184	+		HMPREF1078_RS00535	0.64	-1.1
122,184	+		HMPREF1078_RS00535	0.64	+0.8
122,184	+		HMPREF1078_RS00535	0.64	+0.1
122,185	-		HMPREF1078_RS00535	0.64	+1.7
122,187	-		HMPREF1078_RS00535	0.65	-0.0
122,202	+		HMPREF1078_RS00535	0.67	-0.7
122,202	+		HMPREF1078_RS00535	0.67	-0.3
122,202	+		HMPREF1078_RS00535	0.67	-1.3
122,203	-		HMPREF1078_RS00535	0.67	+1.1
122,203	-		HMPREF1078_RS00535	0.67	+0.1
122,203	-		HMPREF1078_RS00535	0.67	-0.9
122,203	-		HMPREF1078_RS00535	0.67	-0.6
122,204	+		HMPREF1078_RS00535	0.67	-2.9
122,204	+		HMPREF1078_RS00535	0.67	+0.5
122,204	+		HMPREF1078_RS00535	0.67	+0.4
122,204	+		HMPREF1078_RS00535	0.67	+1.9
122,204	+		HMPREF1078_RS00535	0.67	-0.3
122,212	+		HMPREF1078_RS00535	0.69	+1.3
122,213	-		HMPREF1078_RS00535	0.69	-0.3
122,213	-		HMPREF1078_RS00535	0.69	+0.3
122,222	-		HMPREF1078_RS00535	0.70	-0.2
122,223	+		HMPREF1078_RS00535	0.70	-1.3
122,223	+		HMPREF1078_RS00535	0.70	-1.5
122,224	-		HMPREF1078_RS00535	0.71	-0.5
122,231	+		HMPREF1078_RS00535	0.72	-2.5
122,244	+		HMPREF1078_RS00535	0.74	-0.2
122,244	+		HMPREF1078_RS00535	0.74	+1.3
122,245	-		HMPREF1078_RS00535	0.74	-0.3
122,245	-		HMPREF1078_RS00535	0.74	+1.1
122,245	-		HMPREF1078_RS00535	0.74	-0.2
122,245	-		HMPREF1078_RS00535	0.74	+0.4
122,248	+		HMPREF1078_RS00535	0.74	-0.1
122,265	-		HMPREF1078_RS00535	0.77	-0.0
122,270	+		HMPREF1078_RS00535	0.78	-1.0
122,270	+		HMPREF1078_RS00535	0.78	-1.3
122,270	+		HMPREF1078_RS00535	0.78	-0.3
122,270	+		HMPREF1078_RS00535	0.78	-0.6
122,271	-		HMPREF1078_RS00535	0.78	-1.2
122,271	-		HMPREF1078_RS00535	0.78	-1.9
122,271	-		HMPREF1078_RS00535	0.78	+0.7
122,275	-		HMPREF1078_RS00535	0.79	+1.8
122,279	+		HMPREF1078_RS00535	0.79	-0.9
122,280	-		HMPREF1078_RS00535	0.80	+0.8
122,280	-		HMPREF1078_RS00535	0.80	-1.9
122,317	-		HMPREF1078_RS00535	0.85	-0.0
122,320	-		HMPREF1078_RS00535	0.86	+0.7
122,320	-		HMPREF1078_RS00535	0.86	-0.6
122,321	+		HMPREF1078_RS00535	0.86	-0.2
122,321	+		HMPREF1078_RS00535	0.86	+1.7
122,321	+		HMPREF1078_RS00535	0.86	-0.1
122,321	+		HMPREF1078_RS00535	0.86	+0.4
122,321	+		HMPREF1078_RS00535	0.86	+0.7
122,321	+		HMPREF1078_RS00535	0.86	-0.5
122,322	-		HMPREF1078_RS00535	0.86	+0.1
122,322	-		HMPREF1078_RS00535	0.86	+1.1
122,322	-		HMPREF1078_RS00535	0.86	+1.0
122,322	-		HMPREF1078_RS00535	0.86	-1.2
122,325	+		HMPREF1078_RS00535	0.87	+3.2
122,326	-		HMPREF1078_RS00535	0.87	-0.5
122,355	+				-2.1
122,355	+				-1.1
122,375	+				+0.7
122,376	-				-1.2
122,425	+				+1.1
122,425	+				+0.1
122,426	-				-0.2
122,434	+				+2.3
122,435	-				-0.9
122,438	+				-1.2
122,465	+				+0.2
122,530	-				+2.3
122,547	+				-2.1
122,574	+		HMPREF1078_RS00540	0.14	-0.5
122,574	+		HMPREF1078_RS00540	0.14	+0.3
122,576	+		HMPREF1078_RS00540	0.14	-1.7
122,576	+		HMPREF1078_RS00540	0.14	-0.7
122,576	+		HMPREF1078_RS00540	0.14	-2.3
122,599	-		HMPREF1078_RS00540	0.18	+0.0
122,618	-		HMPREF1078_RS00540	0.21	-1.0
122,618	-		HMPREF1078_RS00540	0.21	-1.4
122,701	-		HMPREF1078_RS00540	0.34	-0.2
122,703	+		HMPREF1078_RS00540	0.35	+0.4