Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14435 and HMPREF1078_RS14440 are separated by 96 nucleotides HMPREF1078_RS14440 and HMPREF1078_RS14445 are separated by 23 nucleotides HMPREF1078_RS14445 and HMPREF1078_RS18905 are separated by 96 nucleotides HMPREF1078_RS18905 and HMPREF1078_RS14455 are separated by 164 nucleotides
HMPREF1078_RS14435: HMPREF1078_RS14435 - DNA-binding domain-containing protein, at 378,718 to 379,500
_RS14435
HMPREF1078_RS14440: HMPREF1078_RS14440 - phosphatase PAP2 family protein, at 379,597 to 380,154
_RS14440
HMPREF1078_RS14445: HMPREF1078_RS14445 - hypothetical protein, at 380,178 to 380,387
_RS14445
HMPREF1078_RS18905: HMPREF1078_RS18905 - diacylglycerol kinase family protein, at 380,484 to 380,855
_RS18905
HMPREF1078_RS14455: HMPREF1078_RS14455 - TolC family protein, at 381,020 to 382,501
_RS14455
Position (kb) 380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 379.567 kb on + strand at 379.568 kb on - strand at 379.590 kb on + strand at 379.616 kb on + strand at 379.616 kb on + strand at 379.616 kb on + strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.617 kb on - strand at 379.618 kb on + strand at 379.653 kb on + strand, within HMPREF1078_RS14440 at 379.653 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.757 kb on + strand, within HMPREF1078_RS14440 at 379.758 kb on - strand, within HMPREF1078_RS14440 at 379.758 kb on - strand, within HMPREF1078_RS14440 at 379.758 kb on - strand, within HMPREF1078_RS14440 at 379.778 kb on + strand, within HMPREF1078_RS14440 at 379.779 kb on - strand, within HMPREF1078_RS14440 at 379.779 kb on - strand, within HMPREF1078_RS14440 at 379.848 kb on + strand, within HMPREF1078_RS14440 at 379.848 kb on + strand, within HMPREF1078_RS14440 at 379.922 kb on + strand, within HMPREF1078_RS14440 at 379.934 kb on + strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.935 kb on - strand, within HMPREF1078_RS14440 at 379.941 kb on + strand, within HMPREF1078_RS14440 at 379.942 kb on - strand, within HMPREF1078_RS14440 at 379.942 kb on - strand, within HMPREF1078_RS14440 at 379.942 kb on - strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.945 kb on + strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.946 kb on - strand, within HMPREF1078_RS14440 at 379.947 kb on + strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.948 kb on - strand, within HMPREF1078_RS14440 at 379.951 kb on - strand, within HMPREF1078_RS14440 at 379.951 kb on - strand, within HMPREF1078_RS14440 at 380.005 kb on + strand, within HMPREF1078_RS14440 at 380.058 kb on + strand, within HMPREF1078_RS14440 at 380.058 kb on + strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.059 kb on - strand, within HMPREF1078_RS14440 at 380.159 kb on - strand at 380.159 kb on - strand at 380.159 kb on - strand at 380.162 kb on + strand at 380.162 kb on + strand at 380.163 kb on - strand at 380.169 kb on + strand at 380.179 kb on + strand at 380.180 kb on - strand at 380.180 kb on - strand at 380.198 kb on + strand at 380.210 kb on + strand, within HMPREF1078_RS14445 at 380.220 kb on + strand, within HMPREF1078_RS14445 at 380.229 kb on + strand, within HMPREF1078_RS14445 at 380.230 kb on - strand, within HMPREF1078_RS14445 at 380.230 kb on - strand, within HMPREF1078_RS14445 at 380.230 kb on - strand, within HMPREF1078_RS14445 at 380.236 kb on - strand, within HMPREF1078_RS14445 at 380.247 kb on - strand, within HMPREF1078_RS14445 at 380.288 kb on + strand, within HMPREF1078_RS14445 at 380.326 kb on - strand, within HMPREF1078_RS14445 at 380.374 kb on - strand at 380.387 kb on + strand at 380.407 kb on + strand at 380.408 kb on - strand at 380.412 kb on - strand at 380.426 kb on + strand at 380.427 kb on - strand at 380.466 kb on - strand at 380.466 kb on - strand at 380.466 kb on - strand at 380.535 kb on + strand, within HMPREF1078_RS18905 at 380.535 kb on + strand, within HMPREF1078_RS18905 at 380.536 kb on - strand, within HMPREF1078_RS18905 at 380.544 kb on - strand, within HMPREF1078_RS18905 at 380.548 kb on - strand, within HMPREF1078_RS18905 at 380.611 kb on - strand, within HMPREF1078_RS18905 at 380.704 kb on - strand, within HMPREF1078_RS18905 at 380.726 kb on + strand, within HMPREF1078_RS18905 at 380.739 kb on - strand, within HMPREF1078_RS18905 at 380.755 kb on - strand, within HMPREF1078_RS18905 at 380.779 kb on - strand, within HMPREF1078_RS18905 at 380.784 kb on + strand, within HMPREF1078_RS18905 at 380.807 kb on - strand, within HMPREF1078_RS18905 at 380.858 kb on + strand at 380.859 kb on - strand at 380.863 kb on - strand at 380.892 kb on + strand at 380.892 kb on + strand at 380.893 kb on - strand at 380.895 kb on + strand at 380.895 kb on + strand at 380.896 kb on - strand at 380.896 kb on - strand at 380.896 kb on - strand at 380.898 kb on + strand at 380.916 kb on + strand at 380.917 kb on - strand at 380.917 kb on - strand at 380.917 kb on - strand at 380.969 kb on - strand at 380.969 kb on - strand at 380.970 kb on + strand at 380.970 kb on + strand at 380.971 kb on - strand at 380.983 kb on + strand at 381.014 kb on - strand at 381.016 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.032 kb on + strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.033 kb on - strand at 381.034 kb on + strand at 381.034 kb on + strand at 381.035 kb on - strand at 381.035 kb on - strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.037 kb on - strand at 381.037 kb on - strand at 381.037 kb on - strand at 381.091 kb on + strand at 381.092 kb on - strand at 381.092 kb on - strand at 381.092 kb on - strand at 381.191 kb on + strand, within HMPREF1078_RS14455 at 381.197 kb on - strand, within HMPREF1078_RS14455 at 381.252 kb on - strand, within HMPREF1078_RS14455 at 381.252 kb on - strand, within HMPREF1078_RS14455 at 381.253 kb on + strand, within HMPREF1078_RS14455 at 381.253 kb on + strand, within HMPREF1078_RS14455 at 381.253 kb on + strand, within HMPREF1078_RS14455 at 381.256 kb on + strand, within HMPREF1078_RS14455 at 381.263 kb on + strand, within HMPREF1078_RS14455 at 381.263 kb on + strand, within HMPREF1078_RS14455 at 381.264 kb on - strand, within HMPREF1078_RS14455 at 381.264 kb on - strand, within HMPREF1078_RS14455 at 381.311 kb on - strand, within HMPREF1078_RS14455 at 381.352 kb on + strand, within HMPREF1078_RS14455 at 381.352 kb on + strand, within HMPREF1078_RS14455 at 381.352 kb on + strand, within HMPREF1078_RS14455 at 381.355 kb on - strand, within HMPREF1078_RS14455 at 381.370 kb on + strand, within HMPREF1078_RS14455 at 381.376 kb on - strand, within HMPREF1078_RS14455 at 381.434 kb on + strand, within HMPREF1078_RS14455 at 381.435 kb on - strand, within HMPREF1078_RS14455 at 381.437 kb on - strand, within HMPREF1078_RS14455 at 381.437 kb on - strand, within HMPREF1078_RS14455 at 381.437 kb on - strand, within HMPREF1078_RS14455 at 381.464 kb on - strand, within HMPREF1078_RS14455 at 381.464 kb on - strand, within HMPREF1078_RS14455 at 381.519 kb on + strand, within HMPREF1078_RS14455 at 381.519 kb on + strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.626 kb on - strand, within HMPREF1078_RS14455 at 381.669 kb on + strand, within HMPREF1078_RS14455 at 381.669 kb on + strand, within HMPREF1078_RS14455 at 381.670 kb on - strand, within HMPREF1078_RS14455 at 381.698 kb on - strand, within HMPREF1078_RS14455 at 381.788 kb on - strand, within HMPREF1078_RS14455
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 379,567 + -0.4 379,568 - -0.5 379,590 + -2.2 379,616 + +0.4 379,616 + -0.2 379,616 + +1.5 379,617 - +1.7 379,617 - +1.3 379,617 - -0.1 379,617 - +1.3 379,617 - -0.1 379,617 - -0.5 379,618 + -0.1 379,653 + HMPREF1078_RS14440 0.10 -0.7 379,653 + HMPREF1078_RS14440 0.10 -1.4 379,757 + HMPREF1078_RS14440 0.29 -0.6 379,757 + HMPREF1078_RS14440 0.29 -0.0 379,757 + HMPREF1078_RS14440 0.29 -0.5 379,757 + HMPREF1078_RS14440 0.29 -0.4 379,757 + HMPREF1078_RS14440 0.29 +0.5 379,758 - HMPREF1078_RS14440 0.29 +0.8 379,758 - HMPREF1078_RS14440 0.29 -1.6 379,758 - HMPREF1078_RS14440 0.29 -0.1 379,778 + HMPREF1078_RS14440 0.32 +1.5 379,779 - HMPREF1078_RS14440 0.33 -1.1 379,779 - HMPREF1078_RS14440 0.33 +0.9 379,848 + HMPREF1078_RS14440 0.45 -0.1 379,848 + HMPREF1078_RS14440 0.45 -0.3 379,922 + HMPREF1078_RS14440 0.58 -0.9 379,934 + HMPREF1078_RS14440 0.60 -1.1 379,935 - HMPREF1078_RS14440 0.61 -0.2 379,935 - HMPREF1078_RS14440 0.61 +1.6 379,935 - HMPREF1078_RS14440 0.61 +1.5 379,935 - HMPREF1078_RS14440 0.61 +1.8 379,935 - HMPREF1078_RS14440 0.61 -0.9 379,941 + HMPREF1078_RS14440 0.62 +1.4 379,942 - HMPREF1078_RS14440 0.62 +1.0 379,942 - HMPREF1078_RS14440 0.62 +1.6 379,942 - HMPREF1078_RS14440 0.62 +0.6 379,945 + HMPREF1078_RS14440 0.62 -1.4 379,945 + HMPREF1078_RS14440 0.62 -0.9 379,945 + HMPREF1078_RS14440 0.62 +0.9 379,945 + HMPREF1078_RS14440 0.62 +0.8 379,945 + HMPREF1078_RS14440 0.62 +0.9 379,945 + HMPREF1078_RS14440 0.62 +1.2 379,946 - HMPREF1078_RS14440 0.63 +1.4 379,946 - HMPREF1078_RS14440 0.63 +0.9 379,946 - HMPREF1078_RS14440 0.63 +1.3 379,946 - HMPREF1078_RS14440 0.63 +1.4 379,946 - HMPREF1078_RS14440 0.63 +0.6 379,946 - HMPREF1078_RS14440 0.63 +0.9 379,946 - HMPREF1078_RS14440 0.63 +0.1 379,946 - HMPREF1078_RS14440 0.63 -0.6 379,946 - HMPREF1078_RS14440 0.63 -0.3 379,946 - HMPREF1078_RS14440 0.63 -0.9 379,946 - HMPREF1078_RS14440 0.63 +0.4 379,947 + HMPREF1078_RS14440 0.63 +0.4 379,948 - HMPREF1078_RS14440 0.63 +1.5 379,948 - HMPREF1078_RS14440 0.63 -1.6 379,948 - HMPREF1078_RS14440 0.63 +1.5 379,948 - HMPREF1078_RS14440 0.63 -0.5 379,951 - HMPREF1078_RS14440 0.63 +2.4 379,951 - HMPREF1078_RS14440 0.63 +0.1 380,005 + HMPREF1078_RS14440 0.73 +1.2 380,058 + HMPREF1078_RS14440 0.83 -0.4 380,058 + HMPREF1078_RS14440 0.83 -1.2 380,059 - HMPREF1078_RS14440 0.83 +1.6 380,059 - HMPREF1078_RS14440 0.83 -1.4 380,059 - HMPREF1078_RS14440 0.83 +0.1 380,059 - HMPREF1078_RS14440 0.83 -0.4 380,159 - +0.9 380,159 - -0.3 380,159 - +1.4 380,162 + -0.1 380,162 + +1.9 380,163 - -1.1 380,169 + +1.1 380,179 + +1.2 380,180 - +0.9 380,180 - -3.2 380,198 + +0.3 380,210 + HMPREF1078_RS14445 0.15 +0.9 380,220 + HMPREF1078_RS14445 0.20 -0.3 380,229 + HMPREF1078_RS14445 0.24 +0.8 380,230 - HMPREF1078_RS14445 0.25 -0.6 380,230 - HMPREF1078_RS14445 0.25 +1.8 380,230 - HMPREF1078_RS14445 0.25 +0.4 380,236 - HMPREF1078_RS14445 0.28 +1.5 380,247 - HMPREF1078_RS14445 0.33 +1.5 380,288 + HMPREF1078_RS14445 0.52 +0.6 380,326 - HMPREF1078_RS14445 0.70 -1.6 380,374 - -1.1 380,387 + -0.3 380,407 + +2.9 380,408 - -0.1 380,412 - +0.9 380,426 + +2.8 380,427 - -1.1 380,466 - -0.9 380,466 - -1.6 380,466 - +0.8 380,535 + HMPREF1078_RS18905 0.14 -1.2 380,535 + HMPREF1078_RS18905 0.14 -3.1 380,536 - HMPREF1078_RS18905 0.14 -1.1 380,544 - HMPREF1078_RS18905 0.16 -1.3 380,548 - HMPREF1078_RS18905 0.17 -0.6 380,611 - HMPREF1078_RS18905 0.34 -3.0 380,704 - HMPREF1078_RS18905 0.59 -1.1 380,726 + HMPREF1078_RS18905 0.65 -1.6 380,739 - HMPREF1078_RS18905 0.69 -0.6 380,755 - HMPREF1078_RS18905 0.73 -0.9 380,779 - HMPREF1078_RS18905 0.79 -2.3 380,784 + HMPREF1078_RS18905 0.81 -0.1 380,807 - HMPREF1078_RS18905 0.87 -2.2 380,858 + -1.3 380,859 - -0.4 380,863 - -0.3 380,892 + +1.5 380,892 + -0.1 380,893 - +1.5 380,895 + -0.1 380,895 + -0.4 380,896 - +0.9 380,896 - +1.3 380,896 - -0.6 380,898 + +0.2 380,916 + -0.1 380,917 - +0.9 380,917 - +0.4 380,917 - +0.9 380,969 - -0.1 380,969 - -0.9 380,970 + +0.2 380,970 + -1.1 380,971 - -1.5 380,983 + -2.1 381,014 - +0.7 381,016 + -0.6 381,032 + +0.1 381,032 + -0.1 381,032 + +0.4 381,032 + -0.6 381,032 + -0.2 381,032 + +0.4 381,033 - -0.3 381,033 - +1.0 381,033 - +0.9 381,033 - +0.4 381,033 - +0.5 381,033 - -0.6 381,034 + -0.1 381,034 + +0.5 381,035 - -1.0 381,035 - -0.6 381,036 + +2.5 381,036 + -0.1 381,036 + +1.9 381,036 + -0.1 381,036 + +1.8 381,036 + +0.8 381,037 - -0.1 381,037 - -0.1 381,037 - -2.2 381,091 + -0.6 381,092 - -1.1 381,092 - +0.0 381,092 - +0.2 381,191 + HMPREF1078_RS14455 0.12 +1.2 381,197 - HMPREF1078_RS14455 0.12 +1.8 381,252 - HMPREF1078_RS14455 0.16 -1.4 381,252 - HMPREF1078_RS14455 0.16 -2.9 381,253 + HMPREF1078_RS14455 0.16 +0.7 381,253 + HMPREF1078_RS14455 0.16 -1.2 381,253 + HMPREF1078_RS14455 0.16 -1.1 381,256 + HMPREF1078_RS14455 0.16 +0.4 381,263 + HMPREF1078_RS14455 0.16 +0.8 381,263 + HMPREF1078_RS14455 0.16 -1.5 381,264 - HMPREF1078_RS14455 0.16 -3.7 381,264 - HMPREF1078_RS14455 0.16 -2.1 381,311 - HMPREF1078_RS14455 0.20 -0.1 381,352 + HMPREF1078_RS14455 0.22 -2.5 381,352 + HMPREF1078_RS14455 0.22 -0.1 381,352 + HMPREF1078_RS14455 0.22 +0.9 381,355 - HMPREF1078_RS14455 0.23 +1.3 381,370 + HMPREF1078_RS14455 0.24 -0.5 381,376 - HMPREF1078_RS14455 0.24 +1.4 381,434 + HMPREF1078_RS14455 0.28 +0.3 381,435 - HMPREF1078_RS14455 0.28 +2.3 381,437 - HMPREF1078_RS14455 0.28 +1.7 381,437 - HMPREF1078_RS14455 0.28 -0.1 381,437 - HMPREF1078_RS14455 0.28 -0.4 381,464 - HMPREF1078_RS14455 0.30 +1.5 381,464 - HMPREF1078_RS14455 0.30 +0.1 381,519 + HMPREF1078_RS14455 0.34 -1.1 381,519 + HMPREF1078_RS14455 0.34 -0.1 381,626 - HMPREF1078_RS14455 0.41 +0.3 381,626 - HMPREF1078_RS14455 0.41 -0.2 381,626 - HMPREF1078_RS14455 0.41 -0.2 381,626 - HMPREF1078_RS14455 0.41 -0.5 381,626 - HMPREF1078_RS14455 0.41 +1.2 381,669 + HMPREF1078_RS14455 0.44 +1.5 381,669 + HMPREF1078_RS14455 0.44 -0.6 381,670 - HMPREF1078_RS14455 0.44 +0.4 381,698 - HMPREF1078_RS14455 0.46 -0.9 381,788 - HMPREF1078_RS14455 0.52 -0.6
Or see this region's nucleotide sequence