Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17070 and HMPREF1078_RS17075 are separated by 184 nucleotides HMPREF1078_RS17075 and HMPREF1078_RS17080 are separated by 3 nucleotides HMPREF1078_RS17080 and HMPREF1078_RS17085 are separated by 67 nucleotides
HMPREF1078_RS17070: HMPREF1078_RS17070 - LPS export ABC transporter ATP-binding protein, at 123,426 to 124,178
_RS17070
HMPREF1078_RS17075: HMPREF1078_RS17075 - ABC transporter permease, at 124,363 to 125,109
_RS17075
HMPREF1078_RS17080: HMPREF1078_RS17080 - ATP-binding cassette domain-containing protein, at 125,113 to 125,901
_RS17080
HMPREF1078_RS17085: HMPREF1078_RS17085 - insulinase family protein, at 125,969 to 128,881
_RS17085
Position (kb) 125
126 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 124.221 kb on - strand at 124.221 kb on - strand at 124.223 kb on - strand at 124.252 kb on + strand at 124.264 kb on + strand at 124.264 kb on + strand at 124.357 kb on - strand at 124.369 kb on - strand at 124.376 kb on + strand at 124.376 kb on + strand at 124.376 kb on + strand at 124.377 kb on - strand at 124.385 kb on + strand at 124.393 kb on + strand at 124.393 kb on + strand at 124.394 kb on - strand at 124.394 kb on - strand at 124.394 kb on - strand at 124.469 kb on + strand, within HMPREF1078_RS17075 at 124.470 kb on - strand, within HMPREF1078_RS17075 at 124.478 kb on + strand, within HMPREF1078_RS17075 at 124.479 kb on - strand, within HMPREF1078_RS17075 at 124.556 kb on - strand, within HMPREF1078_RS17075 at 124.557 kb on + strand, within HMPREF1078_RS17075 at 124.589 kb on + strand, within HMPREF1078_RS17075 at 124.596 kb on + strand, within HMPREF1078_RS17075 at 124.597 kb on - strand, within HMPREF1078_RS17075 at 124.597 kb on - strand, within HMPREF1078_RS17075 at 124.806 kb on + strand, within HMPREF1078_RS17075 at 124.806 kb on + strand, within HMPREF1078_RS17075 at 124.815 kb on + strand, within HMPREF1078_RS17075 at 124.816 kb on - strand, within HMPREF1078_RS17075 at 124.816 kb on - strand, within HMPREF1078_RS17075 at 124.869 kb on + strand, within HMPREF1078_RS17075 at 124.869 kb on + strand, within HMPREF1078_RS17075 at 124.870 kb on - strand, within HMPREF1078_RS17075 at 124.906 kb on + strand, within HMPREF1078_RS17075 at 124.907 kb on - strand, within HMPREF1078_RS17075 at 124.930 kb on + strand, within HMPREF1078_RS17075 at 124.930 kb on + strand, within HMPREF1078_RS17075 at 124.941 kb on + strand, within HMPREF1078_RS17075 at 124.941 kb on + strand, within HMPREF1078_RS17075 at 124.954 kb on + strand, within HMPREF1078_RS17075 at 124.955 kb on - strand, within HMPREF1078_RS17075 at 124.966 kb on - strand, within HMPREF1078_RS17075 at 124.995 kb on + strand, within HMPREF1078_RS17075 at 124.996 kb on - strand, within HMPREF1078_RS17075 at 124.996 kb on - strand, within HMPREF1078_RS17075 at 125.088 kb on - strand at 125.097 kb on - strand at 125.107 kb on + strand at 125.130 kb on + strand at 125.130 kb on + strand at 125.130 kb on + strand at 125.130 kb on + strand at 125.291 kb on - strand, within HMPREF1078_RS17080 at 125.320 kb on - strand, within HMPREF1078_RS17080 at 125.356 kb on - strand, within HMPREF1078_RS17080 at 125.424 kb on + strand, within HMPREF1078_RS17080 at 125.424 kb on + strand, within HMPREF1078_RS17080 at 125.425 kb on - strand, within HMPREF1078_RS17080 at 125.425 kb on - strand, within HMPREF1078_RS17080 at 125.425 kb on - strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.443 kb on + strand, within HMPREF1078_RS17080 at 125.535 kb on + strand, within HMPREF1078_RS17080 at 125.585 kb on - strand, within HMPREF1078_RS17080 at 125.637 kb on + strand, within HMPREF1078_RS17080 at 125.658 kb on + strand, within HMPREF1078_RS17080 at 125.671 kb on + strand, within HMPREF1078_RS17080 at 125.685 kb on + strand, within HMPREF1078_RS17080 at 125.685 kb on + strand, within HMPREF1078_RS17080 at 125.685 kb on + strand, within HMPREF1078_RS17080 at 125.686 kb on - strand, within HMPREF1078_RS17080 at 125.686 kb on - strand, within HMPREF1078_RS17080 at 125.790 kb on + strand, within HMPREF1078_RS17080 at 125.791 kb on - strand, within HMPREF1078_RS17080 at 125.873 kb on + strand at 125.908 kb on - strand at 125.958 kb on + strand at 125.970 kb on + strand at 126.015 kb on + strand at 126.015 kb on + strand at 126.015 kb on + strand at 126.016 kb on - strand at 126.016 kb on - strand at 126.056 kb on + strand at 126.057 kb on - strand at 126.059 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.066 kb on + strand at 126.067 kb on - strand at 126.067 kb on - strand at 126.067 kb on - strand at 126.070 kb on + strand at 126.070 kb on + strand at 126.070 kb on + strand at 126.071 kb on - strand at 126.071 kb on - strand at 126.071 kb on - strand at 126.071 kb on - strand at 126.072 kb on + strand at 126.072 kb on + strand at 126.073 kb on - strand at 126.073 kb on - strand at 126.073 kb on - strand at 126.073 kb on - strand at 126.076 kb on + strand at 126.076 kb on + strand at 126.077 kb on - strand at 126.077 kb on - strand at 126.177 kb on - strand at 126.223 kb on + strand at 126.224 kb on - strand at 126.292 kb on + strand, within HMPREF1078_RS17085 at 126.293 kb on - strand, within HMPREF1078_RS17085 at 126.293 kb on - strand, within HMPREF1078_RS17085 at 126.295 kb on + strand, within HMPREF1078_RS17085 at 126.337 kb on + strand, within HMPREF1078_RS17085 at 126.361 kb on + strand, within HMPREF1078_RS17085 at 126.361 kb on + strand, within HMPREF1078_RS17085 at 126.361 kb on + strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.362 kb on - strand, within HMPREF1078_RS17085 at 126.366 kb on + strand, within HMPREF1078_RS17085 at 126.366 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.368 kb on + strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.369 kb on - strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.372 kb on + strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.373 kb on - strand, within HMPREF1078_RS17085 at 126.374 kb on - strand, within HMPREF1078_RS17085 at 126.398 kb on - strand, within HMPREF1078_RS17085 at 126.401 kb on - strand, within HMPREF1078_RS17085 at 126.421 kb on - strand, within HMPREF1078_RS17085 at 126.456 kb on - strand, within HMPREF1078_RS17085 at 126.493 kb on - strand, within HMPREF1078_RS17085 at 126.496 kb on + strand, within HMPREF1078_RS17085 at 126.496 kb on + strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.497 kb on - strand, within HMPREF1078_RS17085 at 126.505 kb on + strand, within HMPREF1078_RS17085 at 126.506 kb on - strand, within HMPREF1078_RS17085 at 126.506 kb on - strand, within HMPREF1078_RS17085 at 126.559 kb on - strand, within HMPREF1078_RS17085 at 126.576 kb on + strand, within HMPREF1078_RS17085 at 126.577 kb on - strand, within HMPREF1078_RS17085 at 126.577 kb on - strand, within HMPREF1078_RS17085 at 126.577 kb on - strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.664 kb on + strand, within HMPREF1078_RS17085 at 126.665 kb on - strand, within HMPREF1078_RS17085 at 126.669 kb on + strand, within HMPREF1078_RS17085 at 126.669 kb on + strand, within HMPREF1078_RS17085 at 126.670 kb on - strand, within HMPREF1078_RS17085 at 126.670 kb on - strand, within HMPREF1078_RS17085 at 126.715 kb on - strand, within HMPREF1078_RS17085 at 126.718 kb on - strand, within HMPREF1078_RS17085 at 126.727 kb on + strand, within HMPREF1078_RS17085 at 126.728 kb on - strand, within HMPREF1078_RS17085 at 126.748 kb on + strand, within HMPREF1078_RS17085 at 126.806 kb on + strand, within HMPREF1078_RS17085 at 126.807 kb on - strand, within HMPREF1078_RS17085 at 126.815 kb on - strand, within HMPREF1078_RS17085 at 126.838 kb on + strand, within HMPREF1078_RS17085 at 126.843 kb on + strand, within HMPREF1078_RS17085 at 126.843 kb on + strand, within HMPREF1078_RS17085 at 126.844 kb on - strand, within HMPREF1078_RS17085
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 124,221 - +1.0 124,221 - +0.6 124,223 - -1.2 124,252 + +0.4 124,264 + -0.9 124,264 + -1.6 124,357 - -2.5 124,369 - -0.0 124,376 + -0.4 124,376 + -3.3 124,376 + -1.0 124,377 - +1.0 124,385 + -3.0 124,393 + -1.9 124,393 + -1.3 124,394 - -2.6 124,394 - -1.9 124,394 - -1.0 124,469 + HMPREF1078_RS17075 0.14 -2.1 124,470 - HMPREF1078_RS17075 0.14 -2.7 124,478 + HMPREF1078_RS17075 0.15 -2.1 124,479 - HMPREF1078_RS17075 0.16 -0.0 124,556 - HMPREF1078_RS17075 0.26 -1.4 124,557 + HMPREF1078_RS17075 0.26 -2.4 124,589 + HMPREF1078_RS17075 0.30 -3.1 124,596 + HMPREF1078_RS17075 0.31 -1.7 124,597 - HMPREF1078_RS17075 0.31 -3.6 124,597 - HMPREF1078_RS17075 0.31 -1.8 124,806 + HMPREF1078_RS17075 0.59 -3.6 124,806 + HMPREF1078_RS17075 0.59 -1.8 124,815 + HMPREF1078_RS17075 0.61 -3.5 124,816 - HMPREF1078_RS17075 0.61 -1.4 124,816 - HMPREF1078_RS17075 0.61 -2.9 124,869 + HMPREF1078_RS17075 0.68 -3.3 124,869 + HMPREF1078_RS17075 0.68 -2.2 124,870 - HMPREF1078_RS17075 0.68 -1.0 124,906 + HMPREF1078_RS17075 0.73 +1.0 124,907 - HMPREF1078_RS17075 0.73 +1.0 124,930 + HMPREF1078_RS17075 0.76 -3.4 124,930 + HMPREF1078_RS17075 0.76 -0.6 124,941 + HMPREF1078_RS17075 0.77 -1.8 124,941 + HMPREF1078_RS17075 0.77 -1.6 124,954 + HMPREF1078_RS17075 0.79 -1.4 124,955 - HMPREF1078_RS17075 0.79 -2.6 124,966 - HMPREF1078_RS17075 0.81 -2.8 124,995 + HMPREF1078_RS17075 0.85 -1.6 124,996 - HMPREF1078_RS17075 0.85 -2.6 124,996 - HMPREF1078_RS17075 0.85 -2.2 125,088 - -4.1 125,097 - -0.0 125,107 + -0.7 125,130 + -3.3 125,130 + -2.2 125,130 + -2.4 125,130 + -3.1 125,291 - HMPREF1078_RS17080 0.23 -1.6 125,320 - HMPREF1078_RS17080 0.26 -1.0 125,356 - HMPREF1078_RS17080 0.31 -3.2 125,424 + HMPREF1078_RS17080 0.39 -2.2 125,424 + HMPREF1078_RS17080 0.39 -3.2 125,425 - HMPREF1078_RS17080 0.40 -1.8 125,425 - HMPREF1078_RS17080 0.40 -2.9 125,425 - HMPREF1078_RS17080 0.40 -0.0 125,443 + HMPREF1078_RS17080 0.42 -1.2 125,443 + HMPREF1078_RS17080 0.42 -1.8 125,443 + HMPREF1078_RS17080 0.42 -4.8 125,443 + HMPREF1078_RS17080 0.42 -1.6 125,535 + HMPREF1078_RS17080 0.53 -4.2 125,585 - HMPREF1078_RS17080 0.60 -2.7 125,637 + HMPREF1078_RS17080 0.66 -2.6 125,658 + HMPREF1078_RS17080 0.69 +0.2 125,671 + HMPREF1078_RS17080 0.71 -2.4 125,685 + HMPREF1078_RS17080 0.72 -1.8 125,685 + HMPREF1078_RS17080 0.72 -3.6 125,685 + HMPREF1078_RS17080 0.72 -1.6 125,686 - HMPREF1078_RS17080 0.73 -1.2 125,686 - HMPREF1078_RS17080 0.73 -3.1 125,790 + HMPREF1078_RS17080 0.86 -2.4 125,791 - HMPREF1078_RS17080 0.86 -2.9 125,873 + -1.8 125,908 - -2.3 125,958 + +2.1 125,970 + +0.0 126,015 + -1.2 126,015 + -1.3 126,015 + +0.1 126,016 - -0.3 126,016 - -1.0 126,056 + -0.8 126,057 - -0.3 126,059 + +0.7 126,066 + -1.5 126,066 + -1.6 126,066 + -0.4 126,066 + +1.5 126,066 + -0.0 126,066 + +1.0 126,067 - -0.7 126,067 - -2.4 126,067 - +0.5 126,070 + +0.4 126,070 + +0.4 126,070 + +0.7 126,071 - +0.1 126,071 - +0.2 126,071 - +0.4 126,071 - +0.3 126,072 + +1.2 126,072 + +0.4 126,073 - -1.5 126,073 - -2.6 126,073 - -0.0 126,073 - +0.9 126,076 + +0.3 126,076 + +0.5 126,077 - +1.5 126,077 - +0.1 126,177 - -0.1 126,223 + -3.6 126,224 - -0.6 126,292 + HMPREF1078_RS17085 0.11 -0.4 126,293 - HMPREF1078_RS17085 0.11 +1.3 126,293 - HMPREF1078_RS17085 0.11 +1.0 126,295 + HMPREF1078_RS17085 0.11 -0.3 126,337 + HMPREF1078_RS17085 0.13 -0.5 126,361 + HMPREF1078_RS17085 0.13 -0.4 126,361 + HMPREF1078_RS17085 0.13 -3.4 126,361 + HMPREF1078_RS17085 0.13 -0.3 126,362 - HMPREF1078_RS17085 0.13 +0.0 126,362 - HMPREF1078_RS17085 0.13 -1.4 126,362 - HMPREF1078_RS17085 0.13 +0.6 126,362 - HMPREF1078_RS17085 0.13 +0.4 126,362 - HMPREF1078_RS17085 0.13 +0.1 126,366 + HMPREF1078_RS17085 0.14 -0.4 126,366 + HMPREF1078_RS17085 0.14 +0.2 126,368 + HMPREF1078_RS17085 0.14 +2.3 126,368 + HMPREF1078_RS17085 0.14 +0.7 126,368 + HMPREF1078_RS17085 0.14 +1.7 126,368 + HMPREF1078_RS17085 0.14 -1.0 126,368 + HMPREF1078_RS17085 0.14 -0.9 126,368 + HMPREF1078_RS17085 0.14 -1.8 126,369 - HMPREF1078_RS17085 0.14 -2.7 126,369 - HMPREF1078_RS17085 0.14 -0.7 126,369 - HMPREF1078_RS17085 0.14 +2.2 126,369 - HMPREF1078_RS17085 0.14 +0.9 126,372 + HMPREF1078_RS17085 0.14 +0.8 126,372 + HMPREF1078_RS17085 0.14 +3.0 126,372 + HMPREF1078_RS17085 0.14 -1.9 126,372 + HMPREF1078_RS17085 0.14 -0.8 126,373 - HMPREF1078_RS17085 0.14 +0.4 126,373 - HMPREF1078_RS17085 0.14 -0.2 126,373 - HMPREF1078_RS17085 0.14 +1.3 126,373 - HMPREF1078_RS17085 0.14 -0.3 126,374 - HMPREF1078_RS17085 0.14 -1.4 126,398 - HMPREF1078_RS17085 0.15 -0.0 126,401 - HMPREF1078_RS17085 0.15 +2.0 126,421 - HMPREF1078_RS17085 0.16 -0.9 126,456 - HMPREF1078_RS17085 0.17 -1.0 126,493 - HMPREF1078_RS17085 0.18 +0.1 126,496 + HMPREF1078_RS17085 0.18 -1.9 126,496 + HMPREF1078_RS17085 0.18 -0.1 126,497 - HMPREF1078_RS17085 0.18 +1.0 126,497 - HMPREF1078_RS17085 0.18 -1.6 126,497 - HMPREF1078_RS17085 0.18 +0.1 126,497 - HMPREF1078_RS17085 0.18 +0.6 126,497 - HMPREF1078_RS17085 0.18 +1.3 126,497 - HMPREF1078_RS17085 0.18 +0.0 126,505 + HMPREF1078_RS17085 0.18 +0.6 126,506 - HMPREF1078_RS17085 0.18 +2.0 126,506 - HMPREF1078_RS17085 0.18 +0.9 126,559 - HMPREF1078_RS17085 0.20 +1.5 126,576 + HMPREF1078_RS17085 0.21 -0.2 126,577 - HMPREF1078_RS17085 0.21 -0.0 126,577 - HMPREF1078_RS17085 0.21 -0.7 126,577 - HMPREF1078_RS17085 0.21 +0.4 126,664 + HMPREF1078_RS17085 0.24 -0.4 126,664 + HMPREF1078_RS17085 0.24 +1.1 126,664 + HMPREF1078_RS17085 0.24 +1.2 126,664 + HMPREF1078_RS17085 0.24 -1.2 126,664 + HMPREF1078_RS17085 0.24 -1.6 126,665 - HMPREF1078_RS17085 0.24 -1.4 126,669 + HMPREF1078_RS17085 0.24 +0.6 126,669 + HMPREF1078_RS17085 0.24 -0.8 126,670 - HMPREF1078_RS17085 0.24 -2.6 126,670 - HMPREF1078_RS17085 0.24 +0.1 126,715 - HMPREF1078_RS17085 0.26 -0.0 126,718 - HMPREF1078_RS17085 0.26 +1.2 126,727 + HMPREF1078_RS17085 0.26 -1.0 126,728 - HMPREF1078_RS17085 0.26 +0.1 126,748 + HMPREF1078_RS17085 0.27 -0.3 126,806 + HMPREF1078_RS17085 0.29 -1.3 126,807 - HMPREF1078_RS17085 0.29 +0.8 126,815 - HMPREF1078_RS17085 0.29 +0.4 126,838 + HMPREF1078_RS17085 0.30 +0.7 126,843 + HMPREF1078_RS17085 0.30 +0.0 126,843 + HMPREF1078_RS17085 0.30 +0.7 126,844 - HMPREF1078_RS17085 0.30 -0.9
Or see this region's nucleotide sequence