Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17055 and HMPREF1078_RS17060 are separated by 325 nucleotides HMPREF1078_RS17060 and HMPREF1078_RS17065 are separated by 69 nucleotides HMPREF1078_RS17065 and HMPREF1078_RS17070 overlap by 4 nucleotides HMPREF1078_RS17070 and HMPREF1078_RS17075 are separated by 184 nucleotides
HMPREF1078_RS17055: HMPREF1078_RS17055 - trigger factor, at 120,531 to 121,886
_RS17055
HMPREF1078_RS17060: HMPREF1078_RS17060 - RNA-binding protein, at 122,212 to 122,454
_RS17060
HMPREF1078_RS17065: HMPREF1078_RS17065 - CPBP family intramembrane metalloprotease, at 122,524 to 123,429
_RS17065
HMPREF1078_RS17070: HMPREF1078_RS17070 - LPS export ABC transporter ATP-binding protein, at 123,426 to 124,178
_RS17070
HMPREF1078_RS17075: HMPREF1078_RS17075 - ABC transporter permease, at 124,363 to 125,109
_RS17075
Position (kb) 122
123
124 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 121.545 kb on + strand, within HMPREF1078_RS17055 at 121.545 kb on + strand, within HMPREF1078_RS17055 at 121.546 kb on - strand, within HMPREF1078_RS17055 at 121.546 kb on - strand, within HMPREF1078_RS17055 at 121.546 kb on - strand, within HMPREF1078_RS17055 at 121.546 kb on - strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.654 kb on + strand, within HMPREF1078_RS17055 at 121.655 kb on - strand, within HMPREF1078_RS17055 at 121.655 kb on - strand, within HMPREF1078_RS17055 at 121.655 kb on - strand, within HMPREF1078_RS17055 at 121.660 kb on + strand, within HMPREF1078_RS17055 at 121.660 kb on + strand, within HMPREF1078_RS17055 at 121.660 kb on + strand, within HMPREF1078_RS17055 at 121.661 kb on - strand, within HMPREF1078_RS17055 at 121.714 kb on + strand, within HMPREF1078_RS17055 at 121.731 kb on - strand, within HMPREF1078_RS17055 at 121.816 kb on + strand at 121.817 kb on - strand at 121.817 kb on - strand at 121.856 kb on + strand at 121.857 kb on - strand at 121.898 kb on + strand at 121.903 kb on - strand at 121.906 kb on + strand at 121.945 kb on + strand at 121.946 kb on - strand at 122.026 kb on - strand at 122.042 kb on - strand at 122.047 kb on - strand at 122.078 kb on + strand at 122.079 kb on - strand at 122.095 kb on - strand at 122.095 kb on - strand at 122.095 kb on - strand at 122.108 kb on - strand at 122.119 kb on + strand at 122.120 kb on - strand at 122.126 kb on + strand at 122.137 kb on + strand at 122.137 kb on + strand at 122.138 kb on - strand at 122.138 kb on - strand at 122.138 kb on - strand at 122.138 kb on - strand at 122.150 kb on + strand at 122.166 kb on - strand at 122.183 kb on - strand at 122.212 kb on - strand at 122.221 kb on + strand at 122.221 kb on + strand at 122.222 kb on - strand at 122.222 kb on - strand at 122.222 kb on - strand at 122.222 kb on - strand at 122.239 kb on + strand, within HMPREF1078_RS17060 at 122.239 kb on + strand, within HMPREF1078_RS17060 at 122.239 kb on + strand, within HMPREF1078_RS17060 at 122.240 kb on - strand, within HMPREF1078_RS17060 at 122.240 kb on - strand, within HMPREF1078_RS17060 at 122.270 kb on + strand, within HMPREF1078_RS17060 at 122.287 kb on - strand, within HMPREF1078_RS17060 at 122.287 kb on - strand, within HMPREF1078_RS17060 at 122.300 kb on + strand, within HMPREF1078_RS17060 at 122.410 kb on + strand, within HMPREF1078_RS17060 at 122.427 kb on - strand, within HMPREF1078_RS17060 at 122.429 kb on + strand, within HMPREF1078_RS17060 at 122.430 kb on - strand at 122.430 kb on - strand at 122.432 kb on + strand at 122.433 kb on - strand at 122.433 kb on - strand at 122.448 kb on + strand at 122.453 kb on - strand at 122.474 kb on + strand at 122.474 kb on + strand at 122.489 kb on + strand at 122.511 kb on + strand at 122.523 kb on + strand at 122.538 kb on + strand at 122.539 kb on - strand at 122.539 kb on - strand at 122.540 kb on + strand at 122.540 kb on + strand at 122.540 kb on + strand at 122.540 kb on + strand at 122.540 kb on + strand at 122.540 kb on + strand at 122.541 kb on - strand at 122.541 kb on - strand at 122.541 kb on - strand at 122.541 kb on - strand at 122.541 kb on - strand at 122.541 kb on - strand at 122.542 kb on + strand at 122.542 kb on + strand at 122.542 kb on + strand at 122.543 kb on - strand at 122.638 kb on + strand, within HMPREF1078_RS17065 at 122.640 kb on + strand, within HMPREF1078_RS17065 at 122.640 kb on + strand, within HMPREF1078_RS17065 at 122.641 kb on - strand, within HMPREF1078_RS17065 at 122.641 kb on - strand, within HMPREF1078_RS17065 at 122.647 kb on + strand, within HMPREF1078_RS17065 at 122.667 kb on + strand, within HMPREF1078_RS17065 at 122.667 kb on + strand, within HMPREF1078_RS17065 at 122.668 kb on - strand, within HMPREF1078_RS17065 at 122.675 kb on - strand, within HMPREF1078_RS17065 at 122.704 kb on - strand, within HMPREF1078_RS17065 at 122.776 kb on + strand, within HMPREF1078_RS17065 at 122.810 kb on + strand, within HMPREF1078_RS17065 at 122.810 kb on + strand, within HMPREF1078_RS17065 at 122.810 kb on + strand, within HMPREF1078_RS17065 at 122.810 kb on + strand, within HMPREF1078_RS17065 at 122.810 kb on + strand, within HMPREF1078_RS17065 at 122.811 kb on - strand, within HMPREF1078_RS17065 at 122.811 kb on - strand, within HMPREF1078_RS17065 at 122.811 kb on - strand, within HMPREF1078_RS17065 at 122.811 kb on - strand, within HMPREF1078_RS17065 at 122.811 kb on - strand, within HMPREF1078_RS17065 at 122.832 kb on + strand, within HMPREF1078_RS17065 at 122.834 kb on + strand, within HMPREF1078_RS17065 at 122.902 kb on - strand, within HMPREF1078_RS17065 at 122.912 kb on + strand, within HMPREF1078_RS17065 at 122.930 kb on + strand, within HMPREF1078_RS17065 at 122.987 kb on + strand, within HMPREF1078_RS17065 at 122.987 kb on + strand, within HMPREF1078_RS17065 at 122.987 kb on + strand, within HMPREF1078_RS17065 at 122.988 kb on - strand, within HMPREF1078_RS17065 at 122.988 kb on - strand, within HMPREF1078_RS17065 at 123.020 kb on + strand, within HMPREF1078_RS17065 at 123.088 kb on + strand, within HMPREF1078_RS17065 at 123.089 kb on - strand, within HMPREF1078_RS17065 at 123.099 kb on + strand, within HMPREF1078_RS17065 at 123.100 kb on - strand, within HMPREF1078_RS17065 at 123.168 kb on + strand, within HMPREF1078_RS17065 at 123.169 kb on - strand, within HMPREF1078_RS17065 at 123.169 kb on - strand, within HMPREF1078_RS17065 at 123.169 kb on - strand, within HMPREF1078_RS17065 at 123.184 kb on + strand, within HMPREF1078_RS17065 at 123.184 kb on + strand, within HMPREF1078_RS17065 at 123.184 kb on + strand, within HMPREF1078_RS17065 at 123.197 kb on + strand, within HMPREF1078_RS17065 at 123.198 kb on - strand, within HMPREF1078_RS17065 at 123.230 kb on + strand, within HMPREF1078_RS17065 at 123.249 kb on + strand, within HMPREF1078_RS17065 at 123.250 kb on - strand, within HMPREF1078_RS17065 at 123.287 kb on + strand, within HMPREF1078_RS17065 at 123.287 kb on + strand, within HMPREF1078_RS17065 at 123.403 kb on - strand at 124.221 kb on - strand at 124.221 kb on - strand at 124.223 kb on - strand at 124.252 kb on + strand at 124.264 kb on + strand at 124.264 kb on + strand at 124.357 kb on - strand at 124.369 kb on - strand at 124.376 kb on + strand at 124.376 kb on + strand at 124.376 kb on + strand at 124.377 kb on - strand at 124.385 kb on + strand at 124.393 kb on + strand at 124.393 kb on + strand at 124.394 kb on - strand at 124.394 kb on - strand at 124.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 121,545 + HMPREF1078_RS17055 0.75 -2.7 121,545 + HMPREF1078_RS17055 0.75 -2.5 121,546 - HMPREF1078_RS17055 0.75 -2.0 121,546 - HMPREF1078_RS17055 0.75 -3.0 121,546 - HMPREF1078_RS17055 0.75 -3.2 121,546 - HMPREF1078_RS17055 0.75 -3.1 121,654 + HMPREF1078_RS17055 0.83 -2.7 121,654 + HMPREF1078_RS17055 0.83 -0.6 121,654 + HMPREF1078_RS17055 0.83 +0.4 121,654 + HMPREF1078_RS17055 0.83 -1.2 121,654 + HMPREF1078_RS17055 0.83 -2.4 121,654 + HMPREF1078_RS17055 0.83 -0.0 121,654 + HMPREF1078_RS17055 0.83 -0.7 121,654 + HMPREF1078_RS17055 0.83 -2.7 121,655 - HMPREF1078_RS17055 0.83 -1.4 121,655 - HMPREF1078_RS17055 0.83 -1.7 121,655 - HMPREF1078_RS17055 0.83 -1.5 121,660 + HMPREF1078_RS17055 0.83 -2.7 121,660 + HMPREF1078_RS17055 0.83 -2.5 121,660 + HMPREF1078_RS17055 0.83 -1.4 121,661 - HMPREF1078_RS17055 0.83 -3.4 121,714 + HMPREF1078_RS17055 0.87 -1.4 121,731 - HMPREF1078_RS17055 0.88 -2.1 121,816 + -2.1 121,817 - -1.6 121,817 - -1.4 121,856 + +0.4 121,857 - -1.1 121,898 + -1.6 121,903 - -2.6 121,906 + -3.7 121,945 + -0.7 121,946 - +0.5 122,026 - -0.4 122,042 - -0.3 122,047 - -0.7 122,078 + +0.3 122,079 - -0.3 122,095 - -0.1 122,095 - +0.5 122,095 - -4.1 122,108 - +0.9 122,119 + -0.9 122,120 - -1.5 122,126 + +0.2 122,137 + -3.6 122,137 + -0.8 122,138 - +0.6 122,138 - +0.5 122,138 - +0.6 122,138 - -0.4 122,150 + +2.1 122,166 - +0.0 122,183 - -0.5 122,212 - -1.6 122,221 + -2.8 122,221 + +0.2 122,222 - -0.8 122,222 - -1.7 122,222 - -1.3 122,222 - -1.2 122,239 + HMPREF1078_RS17060 0.11 -1.3 122,239 + HMPREF1078_RS17060 0.11 +0.7 122,239 + HMPREF1078_RS17060 0.11 +0.4 122,240 - HMPREF1078_RS17060 0.12 +1.0 122,240 - HMPREF1078_RS17060 0.12 -0.9 122,270 + HMPREF1078_RS17060 0.24 -0.1 122,287 - HMPREF1078_RS17060 0.31 -2.2 122,287 - HMPREF1078_RS17060 0.31 -0.4 122,300 + HMPREF1078_RS17060 0.36 -0.3 122,410 + HMPREF1078_RS17060 0.81 -0.4 122,427 - HMPREF1078_RS17060 0.88 -0.2 122,429 + HMPREF1078_RS17060 0.89 +0.2 122,430 - +0.1 122,430 - -1.7 122,432 + +0.4 122,433 - -0.4 122,433 - -1.4 122,448 + -0.0 122,453 - +0.4 122,474 + +0.9 122,474 + +1.0 122,489 + -1.1 122,511 + +0.7 122,523 + +0.7 122,538 + -0.6 122,539 - +1.0 122,539 - -2.0 122,540 + -1.8 122,540 + -2.8 122,540 + -2.8 122,540 + -0.6 122,540 + -1.4 122,540 + -1.0 122,541 - -2.4 122,541 - +1.0 122,541 - +1.0 122,541 - -3.4 122,541 - -0.0 122,541 - -2.0 122,542 + -0.0 122,542 + -1.6 122,542 + -0.6 122,543 - +1.0 122,638 + HMPREF1078_RS17065 0.13 -1.4 122,640 + HMPREF1078_RS17065 0.13 -1.8 122,640 + HMPREF1078_RS17065 0.13 -2.0 122,641 - HMPREF1078_RS17065 0.13 -0.0 122,641 - HMPREF1078_RS17065 0.13 +1.0 122,647 + HMPREF1078_RS17065 0.14 -2.4 122,667 + HMPREF1078_RS17065 0.16 -0.6 122,667 + HMPREF1078_RS17065 0.16 +1.0 122,668 - HMPREF1078_RS17065 0.16 -1.8 122,675 - HMPREF1078_RS17065 0.17 -2.8 122,704 - HMPREF1078_RS17065 0.20 -1.0 122,776 + HMPREF1078_RS17065 0.28 -1.6 122,810 + HMPREF1078_RS17065 0.32 -0.6 122,810 + HMPREF1078_RS17065 0.32 -2.4 122,810 + HMPREF1078_RS17065 0.32 -1.4 122,810 + HMPREF1078_RS17065 0.32 -1.6 122,810 + HMPREF1078_RS17065 0.32 -1.6 122,811 - HMPREF1078_RS17065 0.32 -1.0 122,811 - HMPREF1078_RS17065 0.32 -1.6 122,811 - HMPREF1078_RS17065 0.32 -2.4 122,811 - HMPREF1078_RS17065 0.32 +1.0 122,811 - HMPREF1078_RS17065 0.32 -1.8 122,832 + HMPREF1078_RS17065 0.34 -1.4 122,834 + HMPREF1078_RS17065 0.34 -1.8 122,902 - HMPREF1078_RS17065 0.42 -1.4 122,912 + HMPREF1078_RS17065 0.43 +1.0 122,930 + HMPREF1078_RS17065 0.45 -0.0 122,987 + HMPREF1078_RS17065 0.51 -2.2 122,987 + HMPREF1078_RS17065 0.51 -1.0 122,987 + HMPREF1078_RS17065 0.51 -2.4 122,988 - HMPREF1078_RS17065 0.51 -1.0 122,988 - HMPREF1078_RS17065 0.51 -1.4 123,020 + HMPREF1078_RS17065 0.55 -0.0 123,088 + HMPREF1078_RS17065 0.62 -2.7 123,089 - HMPREF1078_RS17065 0.62 -0.6 123,099 + HMPREF1078_RS17065 0.63 -0.0 123,100 - HMPREF1078_RS17065 0.64 -1.0 123,168 + HMPREF1078_RS17065 0.71 -1.4 123,169 - HMPREF1078_RS17065 0.71 +1.0 123,169 - HMPREF1078_RS17065 0.71 -2.0 123,169 - HMPREF1078_RS17065 0.71 -0.6 123,184 + HMPREF1078_RS17065 0.73 -2.2 123,184 + HMPREF1078_RS17065 0.73 -1.4 123,184 + HMPREF1078_RS17065 0.73 -1.0 123,197 + HMPREF1078_RS17065 0.74 -0.0 123,198 - HMPREF1078_RS17065 0.74 -0.6 123,230 + HMPREF1078_RS17065 0.78 -1.8 123,249 + HMPREF1078_RS17065 0.80 -1.0 123,250 - HMPREF1078_RS17065 0.80 +1.0 123,287 + HMPREF1078_RS17065 0.84 -2.0 123,287 + HMPREF1078_RS17065 0.84 -0.0 123,403 - -2.7 124,221 - +1.0 124,221 - +0.6 124,223 - -1.2 124,252 + +0.4 124,264 + -0.9 124,264 + -1.6 124,357 - -2.5 124,369 - -0.0 124,376 + -0.4 124,376 + -3.3 124,376 + -1.0 124,377 - +1.0 124,385 + -3.0 124,393 + -1.9 124,393 + -1.3 124,394 - -2.6 124,394 - -1.9 124,394 - -1.0
Or see this region's nucleotide sequence