Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16790

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16785 and HMPREF1078_RS16790 are separated by 6 nucleotidesHMPREF1078_RS16790 and HMPREF1078_RS16795 are separated by 85 nucleotides HMPREF1078_RS16785: HMPREF1078_RS16785 - lipoyl synthase, at 71,099 to 71,944 _RS16785 HMPREF1078_RS16790: HMPREF1078_RS16790 - S9 family peptidase, at 71,951 to 74,125 _RS16790 HMPREF1078_RS16795: HMPREF1078_RS16795 - TIGR01212 family radical SAM protein, at 74,211 to 75,167 _RS16795 Position (kb) 71 72 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.062 kb on - strandat 71.064 kb on - strandat 71.064 kb on - strandat 71.069 kb on - strandat 71.069 kb on - strandat 71.102 kb on + strandat 71.102 kb on + strandat 71.102 kb on + strandat 71.103 kb on - strandat 71.103 kb on - strandat 71.253 kb on + strand, within HMPREF1078_RS16785at 71.254 kb on - strand, within HMPREF1078_RS16785at 71.339 kb on + strand, within HMPREF1078_RS16785at 71.339 kb on + strand, within HMPREF1078_RS16785at 71.346 kb on - strand, within HMPREF1078_RS16785at 71.348 kb on - strand, within HMPREF1078_RS16785at 71.348 kb on - strand, within HMPREF1078_RS16785at 71.381 kb on - strand, within HMPREF1078_RS16785at 71.440 kb on + strand, within HMPREF1078_RS16785at 71.459 kb on - strand, within HMPREF1078_RS16785at 71.461 kb on + strand, within HMPREF1078_RS16785at 71.462 kb on - strand, within HMPREF1078_RS16785at 71.469 kb on - strand, within HMPREF1078_RS16785at 71.471 kb on + strand, within HMPREF1078_RS16785at 71.471 kb on + strand, within HMPREF1078_RS16785at 71.543 kb on + strand, within HMPREF1078_RS16785at 71.571 kb on - strand, within HMPREF1078_RS16785at 71.731 kb on + strand, within HMPREF1078_RS16785at 71.755 kb on + strand, within HMPREF1078_RS16785at 71.761 kb on + strand, within HMPREF1078_RS16785at 71.761 kb on + strand, within HMPREF1078_RS16785at 71.762 kb on - strand, within HMPREF1078_RS16785at 71.776 kb on + strand, within HMPREF1078_RS16785at 71.839 kb on + strand, within HMPREF1078_RS16785at 71.840 kb on - strand, within HMPREF1078_RS16785at 71.840 kb on - strand, within HMPREF1078_RS16785at 71.840 kb on - strand, within HMPREF1078_RS16785at 71.842 kb on + strand, within HMPREF1078_RS16785at 71.843 kb on - strand, within HMPREF1078_RS16785at 71.843 kb on - strand, within HMPREF1078_RS16785at 71.945 kb on + strandat 71.947 kb on + strandat 71.947 kb on + strandat 71.948 kb on - strandat 71.948 kb on - strandat 71.959 kb on + strandat 71.986 kb on + strandat 72.023 kb on - strandat 72.029 kb on - strandat 72.072 kb on - strandat 72.185 kb on - strand, within HMPREF1078_RS16790at 72.193 kb on - strand, within HMPREF1078_RS16790at 72.329 kb on - strand, within HMPREF1078_RS16790at 72.450 kb on + strand, within HMPREF1078_RS16790at 72.512 kb on - strand, within HMPREF1078_RS16790at 72.553 kb on + strand, within HMPREF1078_RS16790at 72.554 kb on - strand, within HMPREF1078_RS16790at 72.555 kb on + strand, within HMPREF1078_RS16790at 72.555 kb on + strand, within HMPREF1078_RS16790at 72.556 kb on - strand, within HMPREF1078_RS16790at 72.556 kb on - strand, within HMPREF1078_RS16790at 72.556 kb on - strand, within HMPREF1078_RS16790at 72.559 kb on + strand, within HMPREF1078_RS16790at 72.566 kb on + strand, within HMPREF1078_RS16790at 72.612 kb on + strand, within HMPREF1078_RS16790at 72.680 kb on - strand, within HMPREF1078_RS16790at 72.709 kb on - strand, within HMPREF1078_RS16790at 72.735 kb on - strand, within HMPREF1078_RS16790at 72.834 kb on + strand, within HMPREF1078_RS16790at 72.838 kb on - strand, within HMPREF1078_RS16790at 72.900 kb on - strand, within HMPREF1078_RS16790at 72.900 kb on - strand, within HMPREF1078_RS16790at 72.923 kb on + strand, within HMPREF1078_RS16790at 72.925 kb on + strand, within HMPREF1078_RS16790at 72.926 kb on - strand, within HMPREF1078_RS16790at 73.096 kb on - strand, within HMPREF1078_RS16790at 73.114 kb on - strand, within HMPREF1078_RS16790at 73.150 kb on - strand, within HMPREF1078_RS16790at 73.150 kb on - strand, within HMPREF1078_RS16790at 73.150 kb on - strand, within HMPREF1078_RS16790at 73.210 kb on - strand, within HMPREF1078_RS16790at 73.213 kb on + strand, within HMPREF1078_RS16790at 73.213 kb on + strand, within HMPREF1078_RS16790at 73.214 kb on - strand, within HMPREF1078_RS16790at 73.294 kb on - strand, within HMPREF1078_RS16790at 73.363 kb on + strand, within HMPREF1078_RS16790at 73.396 kb on - strand, within HMPREF1078_RS16790at 73.406 kb on - strand, within HMPREF1078_RS16790at 73.421 kb on + strand, within HMPREF1078_RS16790at 73.613 kb on - strand, within HMPREF1078_RS16790at 73.613 kb on - strand, within HMPREF1078_RS16790at 73.627 kb on + strand, within HMPREF1078_RS16790at 73.638 kb on - strand, within HMPREF1078_RS16790at 73.639 kb on + strand, within HMPREF1078_RS16790at 73.640 kb on - strand, within HMPREF1078_RS16790at 73.643 kb on - strand, within HMPREF1078_RS16790at 73.653 kb on - strand, within HMPREF1078_RS16790at 73.755 kb on + strand, within HMPREF1078_RS16790at 73.756 kb on - strand, within HMPREF1078_RS16790at 73.813 kb on + strand, within HMPREF1078_RS16790at 73.862 kb on - strand, within HMPREF1078_RS16790at 73.862 kb on - strand, within HMPREF1078_RS16790at 73.928 kb on + strandat 73.929 kb on - strandat 73.960 kb on + strandat 73.961 kb on - strandat 74.002 kb on + strandat 74.030 kb on - strandat 74.128 kb on - strandat 74.128 kb on - strandat 74.177 kb on - strandat 74.179 kb on + strandat 74.180 kb on - strandat 74.260 kb on + strandat 74.269 kb on - strandat 74.270 kb on + strandat 74.270 kb on + strandat 74.284 kb on + strandat 74.284 kb on + strandat 74.284 kb on + strandat 74.345 kb on + strand, within HMPREF1078_RS16795at 74.349 kb on + strand, within HMPREF1078_RS16795at 74.460 kb on + strand, within HMPREF1078_RS16795at 74.464 kb on + strand, within HMPREF1078_RS16795at 74.465 kb on - strand, within HMPREF1078_RS16795at 74.470 kb on - strand, within HMPREF1078_RS16795at 74.482 kb on - strand, within HMPREF1078_RS16795at 74.483 kb on + strand, within HMPREF1078_RS16795at 74.483 kb on + strand, within HMPREF1078_RS16795at 74.484 kb on - strand, within HMPREF1078_RS16795at 74.494 kb on - strand, within HMPREF1078_RS16795at 74.494 kb on - strand, within HMPREF1078_RS16795at 74.520 kb on - strand, within HMPREF1078_RS16795at 74.520 kb on - strand, within HMPREF1078_RS16795at 74.620 kb on + strand, within HMPREF1078_RS16795at 74.648 kb on - strand, within HMPREF1078_RS16795at 74.649 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.702 kb on + strand, within HMPREF1078_RS16795at 74.703 kb on - strand, within HMPREF1078_RS16795at 74.703 kb on - strand, within HMPREF1078_RS16795at 74.703 kb on - strand, within HMPREF1078_RS16795at 74.752 kb on + strand, within HMPREF1078_RS16795at 74.752 kb on + strand, within HMPREF1078_RS16795at 74.753 kb on - strand, within HMPREF1078_RS16795at 74.755 kb on - strand, within HMPREF1078_RS16795at 74.804 kb on + strand, within HMPREF1078_RS16795at 74.805 kb on - strand, within HMPREF1078_RS16795at 74.806 kb on + strand, within HMPREF1078_RS16795at 74.806 kb on + strand, within HMPREF1078_RS16795at 74.807 kb on - strand, within HMPREF1078_RS16795at 74.809 kb on + strand, within HMPREF1078_RS16795at 74.931 kb on + strand, within HMPREF1078_RS16795at 74.932 kb on - strand, within HMPREF1078_RS16795at 74.946 kb on + strand, within HMPREF1078_RS16795at 74.947 kb on - strand, within HMPREF1078_RS16795at 74.971 kb on + strand, within HMPREF1078_RS16795at 74.971 kb on + strand, within HMPREF1078_RS16795at 74.971 kb on + strand, within HMPREF1078_RS16795at 74.972 kb on - strand, within HMPREF1078_RS16795at 74.990 kb on + strand, within HMPREF1078_RS16795at 74.991 kb on - strand, within HMPREF1078_RS16795at 74.998 kb on + strand, within HMPREF1078_RS16795at 75.011 kb on - strand, within HMPREF1078_RS16795at 75.057 kb on - strand, within HMPREF1078_RS16795at 75.082 kb on + strandat 75.083 kb on - strandat 75.086 kb on + strandat 75.086 kb on + strandat 75.092 kb on + strandat 75.092 kb on + strandat 75.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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71,062 - -0.0
71,064 - +0.2
71,064 - +0.2
71,069 - +1.6
71,069 - -0.6
71,102 + +1.1
71,102 + -1.0
71,102 + +0.3
71,103 - +1.1
71,103 - -2.4
71,253 + HMPREF1078_RS16785 0.18 -0.0
71,254 - HMPREF1078_RS16785 0.18 +1.1
71,339 + HMPREF1078_RS16785 0.28 +1.6
71,339 + HMPREF1078_RS16785 0.28 +0.3
71,346 - HMPREF1078_RS16785 0.29 +0.2
71,348 - HMPREF1078_RS16785 0.29 -0.6
71,348 - HMPREF1078_RS16785 0.29 -1.0
71,381 - HMPREF1078_RS16785 0.33 -1.4
71,440 + HMPREF1078_RS16785 0.40 -2.7
71,459 - HMPREF1078_RS16785 0.43 -1.0
71,461 + HMPREF1078_RS16785 0.43 +0.4
71,462 - HMPREF1078_RS16785 0.43 +0.8
71,469 - HMPREF1078_RS16785 0.44 +0.2
71,471 + HMPREF1078_RS16785 0.44 +1.0
71,471 + HMPREF1078_RS16785 0.44 -0.6
71,543 + HMPREF1078_RS16785 0.52 -0.0
71,571 - HMPREF1078_RS16785 0.56 +0.4
71,731 + HMPREF1078_RS16785 0.75 +0.5
71,755 + HMPREF1078_RS16785 0.78 +1.0
71,761 + HMPREF1078_RS16785 0.78 -0.0
71,761 + HMPREF1078_RS16785 0.78 -0.2
71,762 - HMPREF1078_RS16785 0.78 -0.9
71,776 + HMPREF1078_RS16785 0.80 -1.4
71,839 + HMPREF1078_RS16785 0.87 +0.5
71,840 - HMPREF1078_RS16785 0.88 +1.6
71,840 - HMPREF1078_RS16785 0.88 +0.5
71,840 - HMPREF1078_RS16785 0.88 -0.0
71,842 + HMPREF1078_RS16785 0.88 +0.6
71,843 - HMPREF1078_RS16785 0.88 +2.0
71,843 - HMPREF1078_RS16785 0.88 +1.2
71,945 + +1.0
71,947 + +0.6
71,947 + +0.1
71,948 - -0.1
71,948 - -0.3
71,959 + -2.0
71,986 + -1.8
72,023 - -3.4
72,029 - -0.6
72,072 - -0.0
72,185 - HMPREF1078_RS16790 0.11 +1.0
72,193 - HMPREF1078_RS16790 0.11 -0.0
72,329 - HMPREF1078_RS16790 0.17 -1.0
72,450 + HMPREF1078_RS16790 0.23 -1.6
72,512 - HMPREF1078_RS16790 0.26 -1.8
72,553 + HMPREF1078_RS16790 0.28 -0.0
72,554 - HMPREF1078_RS16790 0.28 -3.2
72,555 + HMPREF1078_RS16790 0.28 -0.0
72,555 + HMPREF1078_RS16790 0.28 -0.6
72,556 - HMPREF1078_RS16790 0.28 -1.6
72,556 - HMPREF1078_RS16790 0.28 -2.0
72,556 - HMPREF1078_RS16790 0.28 +1.0
72,559 + HMPREF1078_RS16790 0.28 -1.6
72,566 + HMPREF1078_RS16790 0.28 +1.6
72,612 + HMPREF1078_RS16790 0.30 +0.4
72,680 - HMPREF1078_RS16790 0.34 -1.4
72,709 - HMPREF1078_RS16790 0.35 -1.6
72,735 - HMPREF1078_RS16790 0.36 -1.6
72,834 + HMPREF1078_RS16790 0.41 -2.0
72,838 - HMPREF1078_RS16790 0.41 -2.6
72,900 - HMPREF1078_RS16790 0.44 -1.8
72,900 - HMPREF1078_RS16790 0.44 +0.4
72,923 + HMPREF1078_RS16790 0.45 -0.6
72,925 + HMPREF1078_RS16790 0.45 -1.0
72,926 - HMPREF1078_RS16790 0.45 -2.7
73,096 - HMPREF1078_RS16790 0.53 -1.0
73,114 - HMPREF1078_RS16790 0.53 +1.0
73,150 - HMPREF1078_RS16790 0.55 -1.8
73,150 - HMPREF1078_RS16790 0.55 -1.0
73,150 - HMPREF1078_RS16790 0.55 +1.0
73,210 - HMPREF1078_RS16790 0.58 -0.0
73,213 + HMPREF1078_RS16790 0.58 -0.0
73,213 + HMPREF1078_RS16790 0.58 -0.6
73,214 - HMPREF1078_RS16790 0.58 -2.0
73,294 - HMPREF1078_RS16790 0.62 -0.6
73,363 + HMPREF1078_RS16790 0.65 -1.6
73,396 - HMPREF1078_RS16790 0.66 -0.0
73,406 - HMPREF1078_RS16790 0.67 -1.0
73,421 + HMPREF1078_RS16790 0.68 +1.0
73,613 - HMPREF1078_RS16790 0.76 -1.4
73,613 - HMPREF1078_RS16790 0.76 -1.8
73,627 + HMPREF1078_RS16790 0.77 -0.0
73,638 - HMPREF1078_RS16790 0.78 -1.6
73,639 + HMPREF1078_RS16790 0.78 +1.0
73,640 - HMPREF1078_RS16790 0.78 -1.4
73,643 - HMPREF1078_RS16790 0.78 +1.0
73,653 - HMPREF1078_RS16790 0.78 -1.4
73,755 + HMPREF1078_RS16790 0.83 +1.0
73,756 - HMPREF1078_RS16790 0.83 -1.4
73,813 + HMPREF1078_RS16790 0.86 -0.6
73,862 - HMPREF1078_RS16790 0.88 -1.0
73,862 - HMPREF1078_RS16790 0.88 -1.8
73,928 + -0.4
73,929 - +1.0
73,960 + -2.2
73,961 - -1.0
74,002 + +1.0
74,030 - -1.6
74,128 - -0.0
74,128 - +0.7
74,177 - -2.0
74,179 + +1.0
74,180 - +2.0
74,260 + -2.7
74,269 - +0.2
74,270 + +0.2
74,270 + +1.3
74,284 + +1.2
74,284 + +2.4
74,284 + +0.6
74,345 + HMPREF1078_RS16795 0.14 -1.5
74,349 + HMPREF1078_RS16795 0.14 +0.8
74,460 + HMPREF1078_RS16795 0.26 -0.9
74,464 + HMPREF1078_RS16795 0.26 -0.0
74,465 - HMPREF1078_RS16795 0.27 +0.3
74,470 - HMPREF1078_RS16795 0.27 -2.8
74,482 - HMPREF1078_RS16795 0.28 -0.3
74,483 + HMPREF1078_RS16795 0.28 -0.5
74,483 + HMPREF1078_RS16795 0.28 -0.6
74,484 - HMPREF1078_RS16795 0.29 -2.2
74,494 - HMPREF1078_RS16795 0.30 -1.8
74,494 - HMPREF1078_RS16795 0.30 -0.9
74,520 - HMPREF1078_RS16795 0.32 +0.7
74,520 - HMPREF1078_RS16795 0.32 -1.7
74,620 + HMPREF1078_RS16795 0.43 -1.6
74,648 - HMPREF1078_RS16795 0.46 -2.5
74,649 + HMPREF1078_RS16795 0.46 +1.0
74,702 + HMPREF1078_RS16795 0.51 -0.4
74,702 + HMPREF1078_RS16795 0.51 -0.6
74,702 + HMPREF1078_RS16795 0.51 +1.0
74,702 + HMPREF1078_RS16795 0.51 -1.0
74,702 + HMPREF1078_RS16795 0.51 +0.6
74,702 + HMPREF1078_RS16795 0.51 -0.1
74,702 + HMPREF1078_RS16795 0.51 -1.4
74,702 + HMPREF1078_RS16795 0.51 -0.6
74,703 - HMPREF1078_RS16795 0.51 +1.1
74,703 - HMPREF1078_RS16795 0.51 +0.2
74,703 - HMPREF1078_RS16795 0.51 -0.4
74,752 + HMPREF1078_RS16795 0.57 +0.6
74,752 + HMPREF1078_RS16795 0.57 -1.6
74,753 - HMPREF1078_RS16795 0.57 -0.1
74,755 - HMPREF1078_RS16795 0.57 +0.4
74,804 + HMPREF1078_RS16795 0.62 +0.7
74,805 - HMPREF1078_RS16795 0.62 +0.1
74,806 + HMPREF1078_RS16795 0.62 -2.0
74,806 + HMPREF1078_RS16795 0.62 +0.4
74,807 - HMPREF1078_RS16795 0.62 +0.1
74,809 + HMPREF1078_RS16795 0.62 -0.0
74,931 + HMPREF1078_RS16795 0.75 -0.0
74,932 - HMPREF1078_RS16795 0.75 +0.6
74,946 + HMPREF1078_RS16795 0.77 -0.0
74,947 - HMPREF1078_RS16795 0.77 -2.6
74,971 + HMPREF1078_RS16795 0.79 +0.7
74,971 + HMPREF1078_RS16795 0.79 -0.0
74,971 + HMPREF1078_RS16795 0.79 +2.3
74,972 - HMPREF1078_RS16795 0.80 +0.6
74,990 + HMPREF1078_RS16795 0.81 -0.6
74,991 - HMPREF1078_RS16795 0.82 +1.1
74,998 + HMPREF1078_RS16795 0.82 -0.2
75,011 - HMPREF1078_RS16795 0.84 +1.2
75,057 - HMPREF1078_RS16795 0.88 +0.9
75,082 + +1.1
75,083 - -1.8
75,086 + -1.4
75,086 + -1.4
75,092 + -1.2
75,092 + -1.1
75,093 - +1.7

Or see this region's nucleotide sequence