Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16155 and HMPREF1078_RS16160 are separated by 13 nucleotides HMPREF1078_RS16160 and HMPREF1078_RS16165 overlap by 74 nucleotides HMPREF1078_RS16165 and HMPREF1078_RS16170 are separated by 154 nucleotides
HMPREF1078_RS16155: HMPREF1078_RS16155 - rod shape-determining protein RodA, at 355,215 to 356,699
_RS16155
HMPREF1078_RS16160: HMPREF1078_RS16160 - gliding motility lipoprotein GldH, at 356,713 to 357,237
_RS16160
HMPREF1078_RS16165: HMPREF1078_RS16165 - regulatory iron-sulfur-containing complex subunit RicT, at 357,164 to 358,591
_RS16165
HMPREF1078_RS16170: HMPREF1078_RS16170 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 358,746 to 359,933
_RS16170
Position (kb) 357
358
359 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 356.698 kb on - strand at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.796 kb on + strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.797 kb on - strand, within HMPREF1078_RS16160 at 356.798 kb on + strand, within HMPREF1078_RS16160 at 356.799 kb on - strand, within HMPREF1078_RS16160 at 356.820 kb on + strand, within HMPREF1078_RS16160 at 356.821 kb on - strand, within HMPREF1078_RS16160 at 356.822 kb on + strand, within HMPREF1078_RS16160 at 356.822 kb on + strand, within HMPREF1078_RS16160 at 356.852 kb on + strand, within HMPREF1078_RS16160 at 356.962 kb on + strand, within HMPREF1078_RS16160 at 356.972 kb on + strand, within HMPREF1078_RS16160 at 356.979 kb on - strand, within HMPREF1078_RS16160 at 356.986 kb on - strand, within HMPREF1078_RS16160 at 356.986 kb on - strand, within HMPREF1078_RS16160 at 356.995 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.025 kb on + strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.026 kb on - strand, within HMPREF1078_RS16160 at 357.027 kb on + strand, within HMPREF1078_RS16160 at 357.027 kb on + strand, within HMPREF1078_RS16160 at 357.027 kb on + strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.028 kb on - strand, within HMPREF1078_RS16160 at 357.050 kb on + strand, within HMPREF1078_RS16160 at 357.050 kb on + strand, within HMPREF1078_RS16160 at 357.051 kb on - strand, within HMPREF1078_RS16160 at 357.051 kb on - strand, within HMPREF1078_RS16160 at 357.051 kb on - strand, within HMPREF1078_RS16160 at 357.053 kb on + strand, within HMPREF1078_RS16160 at 357.054 kb on - strand, within HMPREF1078_RS16160 at 357.054 kb on - strand, within HMPREF1078_RS16160 at 357.054 kb on - strand, within HMPREF1078_RS16160 at 357.104 kb on + strand, within HMPREF1078_RS16160 at 357.104 kb on + strand, within HMPREF1078_RS16160 at 357.105 kb on - strand, within HMPREF1078_RS16160 at 357.214 kb on + strand at 357.215 kb on - strand at 357.251 kb on - strand at 357.260 kb on + strand at 357.712 kb on - strand, within HMPREF1078_RS16165 at 357.712 kb on - strand, within HMPREF1078_RS16165 at 357.734 kb on - strand, within HMPREF1078_RS16165 at 357.751 kb on - strand, within HMPREF1078_RS16165 at 357.753 kb on + strand, within HMPREF1078_RS16165 at 357.753 kb on + strand, within HMPREF1078_RS16165 at 357.754 kb on - strand, within HMPREF1078_RS16165 at 357.754 kb on - strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.757 kb on + strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.758 kb on - strand, within HMPREF1078_RS16165 at 357.817 kb on - strand, within HMPREF1078_RS16165 at 357.817 kb on - strand, within HMPREF1078_RS16165 at 357.817 kb on - strand, within HMPREF1078_RS16165 at 357.831 kb on + strand, within HMPREF1078_RS16165 at 357.832 kb on - strand, within HMPREF1078_RS16165 at 357.832 kb on - strand, within HMPREF1078_RS16165 at 357.891 kb on - strand, within HMPREF1078_RS16165 at 357.891 kb on - strand, within HMPREF1078_RS16165 at 357.891 kb on - strand, within HMPREF1078_RS16165 at 357.893 kb on - strand, within HMPREF1078_RS16165 at 357.921 kb on - strand, within HMPREF1078_RS16165 at 357.927 kb on - strand, within HMPREF1078_RS16165 at 357.927 kb on - strand, within HMPREF1078_RS16165 at 358.228 kb on - strand, within HMPREF1078_RS16165 at 358.407 kb on - strand, within HMPREF1078_RS16165 at 358.426 kb on - strand, within HMPREF1078_RS16165 at 358.574 kb on - strand at 358.603 kb on - strand at 358.603 kb on - strand at 358.603 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.605 kb on - strand at 358.607 kb on - strand at 358.612 kb on - strand at 358.612 kb on - strand at 358.612 kb on - strand at 358.616 kb on - strand at 358.641 kb on - strand at 358.679 kb on + strand at 358.679 kb on + strand at 358.680 kb on - strand at 358.726 kb on + strand at 358.726 kb on + strand at 358.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 356,698 - +2.7 356,796 + HMPREF1078_RS16160 0.16 -1.6 356,796 + HMPREF1078_RS16160 0.16 -3.0 356,796 + HMPREF1078_RS16160 0.16 -4.6 356,796 + HMPREF1078_RS16160 0.16 -1.9 356,796 + HMPREF1078_RS16160 0.16 -4.0 356,796 + HMPREF1078_RS16160 0.16 -1.4 356,797 - HMPREF1078_RS16160 0.16 -3.0 356,797 - HMPREF1078_RS16160 0.16 -2.7 356,797 - HMPREF1078_RS16160 0.16 -2.0 356,797 - HMPREF1078_RS16160 0.16 -3.8 356,797 - HMPREF1078_RS16160 0.16 -3.4 356,797 - HMPREF1078_RS16160 0.16 -3.2 356,798 + HMPREF1078_RS16160 0.16 -4.3 356,799 - HMPREF1078_RS16160 0.16 -0.0 356,820 + HMPREF1078_RS16160 0.20 -3.4 356,821 - HMPREF1078_RS16160 0.21 -3.9 356,822 + HMPREF1078_RS16160 0.21 -4.5 356,822 + HMPREF1078_RS16160 0.21 -2.5 356,852 + HMPREF1078_RS16160 0.26 -3.4 356,962 + HMPREF1078_RS16160 0.47 -3.4 356,972 + HMPREF1078_RS16160 0.49 -1.4 356,979 - HMPREF1078_RS16160 0.51 -3.4 356,986 - HMPREF1078_RS16160 0.52 -4.1 356,986 - HMPREF1078_RS16160 0.52 -2.7 356,995 + HMPREF1078_RS16160 0.54 -0.6 357,025 + HMPREF1078_RS16160 0.59 -0.6 357,025 + HMPREF1078_RS16160 0.59 -3.7 357,025 + HMPREF1078_RS16160 0.59 -3.0 357,025 + HMPREF1078_RS16160 0.59 -0.0 357,026 - HMPREF1078_RS16160 0.60 -3.7 357,026 - HMPREF1078_RS16160 0.60 -1.4 357,026 - HMPREF1078_RS16160 0.60 -2.6 357,026 - HMPREF1078_RS16160 0.60 -2.4 357,027 + HMPREF1078_RS16160 0.60 -3.9 357,027 + HMPREF1078_RS16160 0.60 -5.4 357,027 + HMPREF1078_RS16160 0.60 -2.2 357,028 - HMPREF1078_RS16160 0.60 -3.6 357,028 - HMPREF1078_RS16160 0.60 -2.5 357,028 - HMPREF1078_RS16160 0.60 -2.4 357,028 - HMPREF1078_RS16160 0.60 -3.3 357,028 - HMPREF1078_RS16160 0.60 -0.6 357,028 - HMPREF1078_RS16160 0.60 -5.0 357,050 + HMPREF1078_RS16160 0.64 -3.1 357,050 + HMPREF1078_RS16160 0.64 -1.4 357,051 - HMPREF1078_RS16160 0.64 -2.5 357,051 - HMPREF1078_RS16160 0.64 -4.2 357,051 - HMPREF1078_RS16160 0.64 -0.6 357,053 + HMPREF1078_RS16160 0.65 -2.9 357,054 - HMPREF1078_RS16160 0.65 -3.0 357,054 - HMPREF1078_RS16160 0.65 -4.2 357,054 - HMPREF1078_RS16160 0.65 -3.0 357,104 + HMPREF1078_RS16160 0.74 -2.5 357,104 + HMPREF1078_RS16160 0.74 -4.9 357,105 - HMPREF1078_RS16160 0.75 -3.0 357,214 + -2.2 357,215 - -1.6 357,251 - +1.6 357,260 + -1.0 357,712 - HMPREF1078_RS16165 0.38 -0.6 357,712 - HMPREF1078_RS16165 0.38 -1.9 357,734 - HMPREF1078_RS16165 0.40 +0.3 357,751 - HMPREF1078_RS16165 0.41 -2.6 357,753 + HMPREF1078_RS16165 0.41 -2.2 357,753 + HMPREF1078_RS16165 0.41 -2.4 357,754 - HMPREF1078_RS16165 0.41 -1.3 357,754 - HMPREF1078_RS16165 0.41 -1.8 357,757 + HMPREF1078_RS16165 0.42 -0.0 357,757 + HMPREF1078_RS16165 0.42 -3.0 357,757 + HMPREF1078_RS16165 0.42 -3.5 357,757 + HMPREF1078_RS16165 0.42 -1.4 357,758 - HMPREF1078_RS16165 0.42 -3.0 357,758 - HMPREF1078_RS16165 0.42 -0.4 357,758 - HMPREF1078_RS16165 0.42 -1.3 357,758 - HMPREF1078_RS16165 0.42 +0.8 357,817 - HMPREF1078_RS16165 0.46 -2.4 357,817 - HMPREF1078_RS16165 0.46 -3.5 357,817 - HMPREF1078_RS16165 0.46 -3.0 357,831 + HMPREF1078_RS16165 0.47 -1.4 357,832 - HMPREF1078_RS16165 0.47 -2.9 357,832 - HMPREF1078_RS16165 0.47 -2.0 357,891 - HMPREF1078_RS16165 0.51 +1.7 357,891 - HMPREF1078_RS16165 0.51 -1.0 357,891 - HMPREF1078_RS16165 0.51 -3.0 357,893 - HMPREF1078_RS16165 0.51 -0.0 357,921 - HMPREF1078_RS16165 0.53 -1.4 357,927 - HMPREF1078_RS16165 0.53 -2.9 357,927 - HMPREF1078_RS16165 0.53 -0.6 358,228 - HMPREF1078_RS16165 0.75 -2.0 358,407 - HMPREF1078_RS16165 0.87 -0.4 358,426 - HMPREF1078_RS16165 0.88 -2.4 358,574 - -1.6 358,603 - +1.4 358,603 - +1.7 358,603 - -0.0 358,605 - -1.0 358,605 - -0.2 358,605 - +0.8 358,605 - +1.4 358,605 - +0.6 358,605 - +0.4 358,605 - -2.5 358,605 - -1.6 358,605 - -0.9 358,605 - +1.7 358,605 - -0.4 358,607 - +1.4 358,612 - -0.0 358,612 - +1.4 358,612 - -1.0 358,616 - -1.0 358,641 - -0.9 358,679 + +0.6 358,679 + -2.2 358,680 - +1.2 358,726 + -1.0 358,726 + +1.0 358,748 - +1.8
Or see this region's nucleotide sequence