Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16075 and HMPREF1078_RS16080 are separated by 98 nucleotides HMPREF1078_RS16080 and HMPREF1078_RS16085 are separated by 127 nucleotides HMPREF1078_RS16085 and HMPREF1078_RS16090 are separated by 57 nucleotides
HMPREF1078_RS16075: HMPREF1078_RS16075 - AAA family ATPase, at 338,923 to 341,049
_RS16075
HMPREF1078_RS16080: HMPREF1078_RS16080 - TrkA C-terminal domain-containing protein, at 341,148 to 342,746
_RS16080
HMPREF1078_RS16085: HMPREF1078_RS16085 - tRNA pseudouridine(38-40) synthase TruA, at 342,874 to 343,638
_RS16085
HMPREF1078_RS16090: HMPREF1078_RS16090 - DMT family transporter, at 343,696 to 344,592
_RS16090
Position (kb) 341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 340.205 kb on - strand, within HMPREF1078_RS16075 at 340.205 kb on - strand, within HMPREF1078_RS16075 at 340.229 kb on + strand, within HMPREF1078_RS16075 at 340.269 kb on - strand, within HMPREF1078_RS16075 at 340.327 kb on - strand, within HMPREF1078_RS16075 at 340.344 kb on + strand, within HMPREF1078_RS16075 at 340.344 kb on + strand, within HMPREF1078_RS16075 at 340.344 kb on + strand, within HMPREF1078_RS16075 at 340.346 kb on + strand, within HMPREF1078_RS16075 at 340.347 kb on - strand, within HMPREF1078_RS16075 at 340.382 kb on + strand, within HMPREF1078_RS16075 at 340.437 kb on + strand, within HMPREF1078_RS16075 at 340.495 kb on - strand, within HMPREF1078_RS16075 at 340.495 kb on - strand, within HMPREF1078_RS16075 at 340.502 kb on + strand, within HMPREF1078_RS16075 at 340.606 kb on + strand, within HMPREF1078_RS16075 at 340.607 kb on - strand, within HMPREF1078_RS16075 at 340.616 kb on - strand, within HMPREF1078_RS16075 at 340.624 kb on + strand, within HMPREF1078_RS16075 at 340.647 kb on + strand, within HMPREF1078_RS16075 at 340.647 kb on + strand, within HMPREF1078_RS16075 at 340.659 kb on + strand, within HMPREF1078_RS16075 at 340.753 kb on - strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.826 kb on + strand, within HMPREF1078_RS16075 at 340.827 kb on - strand, within HMPREF1078_RS16075 at 340.881 kb on + strand at 340.882 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.889 kb on - strand at 340.936 kb on - strand at 341.081 kb on + strand at 341.081 kb on + strand at 341.123 kb on + strand at 341.142 kb on + strand at 341.143 kb on - strand at 341.143 kb on - strand at 341.150 kb on - strand at 341.151 kb on + strand at 341.152 kb on - strand at 341.187 kb on + strand at 341.188 kb on - strand at 341.400 kb on + strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.497 kb on - strand, within HMPREF1078_RS16080 at 341.646 kb on + strand, within HMPREF1078_RS16080 at 341.647 kb on - strand, within HMPREF1078_RS16080 at 341.737 kb on - strand, within HMPREF1078_RS16080 at 341.841 kb on - strand, within HMPREF1078_RS16080 at 341.870 kb on - strand, within HMPREF1078_RS16080 at 341.875 kb on - strand, within HMPREF1078_RS16080 at 342.054 kb on + strand, within HMPREF1078_RS16080 at 342.055 kb on - strand, within HMPREF1078_RS16080 at 342.141 kb on + strand, within HMPREF1078_RS16080 at 342.141 kb on + strand, within HMPREF1078_RS16080 at 342.141 kb on + strand, within HMPREF1078_RS16080 at 342.142 kb on - strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.143 kb on + strand, within HMPREF1078_RS16080 at 342.144 kb on - strand, within HMPREF1078_RS16080 at 342.144 kb on - strand, within HMPREF1078_RS16080 at 342.188 kb on - strand, within HMPREF1078_RS16080 at 342.427 kb on + strand, within HMPREF1078_RS16080 at 342.427 kb on + strand, within HMPREF1078_RS16080 at 342.428 kb on - strand, within HMPREF1078_RS16080 at 342.428 kb on - strand, within HMPREF1078_RS16080 at 342.428 kb on - strand, within HMPREF1078_RS16080 at 342.431 kb on + strand, within HMPREF1078_RS16080 at 342.432 kb on - strand, within HMPREF1078_RS16080 at 342.432 kb on - strand, within HMPREF1078_RS16080 at 342.432 kb on - strand, within HMPREF1078_RS16080 at 342.435 kb on + strand, within HMPREF1078_RS16080 at 342.480 kb on + strand, within HMPREF1078_RS16080 at 342.480 kb on + strand, within HMPREF1078_RS16080 at 342.481 kb on - strand, within HMPREF1078_RS16080 at 342.481 kb on - strand, within HMPREF1078_RS16080 at 342.481 kb on - strand, within HMPREF1078_RS16080 at 342.538 kb on - strand, within HMPREF1078_RS16080 at 342.538 kb on - strand, within HMPREF1078_RS16080 at 342.561 kb on + strand, within HMPREF1078_RS16080 at 342.597 kb on + strand at 342.681 kb on + strand at 342.754 kb on - strand at 342.772 kb on + strand at 342.802 kb on + strand at 342.804 kb on + strand at 342.804 kb on + strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.856 kb on - strand at 342.856 kb on - strand at 342.888 kb on + strand at 342.890 kb on + strand at 342.891 kb on - strand at 342.896 kb on + strand at 342.896 kb on + strand at 342.896 kb on + strand at 342.901 kb on + strand at 342.932 kb on + strand at 342.964 kb on - strand, within HMPREF1078_RS16085 at 342.964 kb on - strand, within HMPREF1078_RS16085 at 342.982 kb on - strand, within HMPREF1078_RS16085 at 343.134 kb on + strand, within HMPREF1078_RS16085 at 343.149 kb on + strand, within HMPREF1078_RS16085 at 343.154 kb on + strand, within HMPREF1078_RS16085 at 343.154 kb on + strand, within HMPREF1078_RS16085 at 343.154 kb on + strand, within HMPREF1078_RS16085 at 343.155 kb on - strand, within HMPREF1078_RS16085 at 343.160 kb on + strand, within HMPREF1078_RS16085 at 343.161 kb on - strand, within HMPREF1078_RS16085 at 343.201 kb on - strand, within HMPREF1078_RS16085 at 343.201 kb on - strand, within HMPREF1078_RS16085 at 343.205 kb on - strand, within HMPREF1078_RS16085 at 343.205 kb on - strand, within HMPREF1078_RS16085 at 343.206 kb on + strand, within HMPREF1078_RS16085 at 343.207 kb on - strand, within HMPREF1078_RS16085 at 343.210 kb on + strand, within HMPREF1078_RS16085 at 343.257 kb on + strand, within HMPREF1078_RS16085 at 343.257 kb on + strand, within HMPREF1078_RS16085 at 343.258 kb on - strand, within HMPREF1078_RS16085 at 343.318 kb on + strand, within HMPREF1078_RS16085 at 343.319 kb on - strand, within HMPREF1078_RS16085 at 343.322 kb on + strand, within HMPREF1078_RS16085 at 343.322 kb on + strand, within HMPREF1078_RS16085 at 343.381 kb on + strand, within HMPREF1078_RS16085 at 343.381 kb on + strand, within HMPREF1078_RS16085 at 343.382 kb on - strand, within HMPREF1078_RS16085 at 343.382 kb on - strand, within HMPREF1078_RS16085 at 343.383 kb on + strand, within HMPREF1078_RS16085 at 343.383 kb on + strand, within HMPREF1078_RS16085 at 343.384 kb on - strand, within HMPREF1078_RS16085 at 343.427 kb on + strand, within HMPREF1078_RS16085 at 343.428 kb on - strand, within HMPREF1078_RS16085 at 343.428 kb on - strand, within HMPREF1078_RS16085 at 343.452 kb on + strand, within HMPREF1078_RS16085 at 343.452 kb on + strand, within HMPREF1078_RS16085 at 343.453 kb on - strand, within HMPREF1078_RS16085 at 343.453 kb on - strand, within HMPREF1078_RS16085 at 343.582 kb on + strand at 343.664 kb on + strand at 343.695 kb on + strand at 343.696 kb on - strand at 343.696 kb on - strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 340,205 - HMPREF1078_RS16075 0.60 +1.3 340,205 - HMPREF1078_RS16075 0.60 -0.9 340,229 + HMPREF1078_RS16075 0.61 +0.8 340,269 - HMPREF1078_RS16075 0.63 +0.8 340,327 - HMPREF1078_RS16075 0.66 -1.2 340,344 + HMPREF1078_RS16075 0.67 -3.4 340,344 + HMPREF1078_RS16075 0.67 +0.4 340,344 + HMPREF1078_RS16075 0.67 +1.0 340,346 + HMPREF1078_RS16075 0.67 -0.2 340,347 - HMPREF1078_RS16075 0.67 -0.4 340,382 + HMPREF1078_RS16075 0.69 +2.0 340,437 + HMPREF1078_RS16075 0.71 -0.0 340,495 - HMPREF1078_RS16075 0.74 -0.9 340,495 - HMPREF1078_RS16075 0.74 +1.4 340,502 + HMPREF1078_RS16075 0.74 -0.0 340,606 + HMPREF1078_RS16075 0.79 -1.9 340,607 - HMPREF1078_RS16075 0.79 +1.3 340,616 - HMPREF1078_RS16075 0.80 +0.4 340,624 + HMPREF1078_RS16075 0.80 -0.0 340,647 + HMPREF1078_RS16075 0.81 +2.1 340,647 + HMPREF1078_RS16075 0.81 -1.6 340,659 + HMPREF1078_RS16075 0.82 +0.3 340,753 - HMPREF1078_RS16075 0.86 -0.0 340,826 + HMPREF1078_RS16075 0.89 +1.0 340,826 + HMPREF1078_RS16075 0.89 +1.8 340,826 + HMPREF1078_RS16075 0.89 +1.2 340,827 - HMPREF1078_RS16075 0.90 +1.1 340,881 + +0.3 340,882 - +0.7 340,889 - -1.5 340,889 - -0.3 340,889 - +0.9 340,889 - +0.4 340,936 - +0.5 341,081 + -1.5 341,081 + -1.9 341,123 + -1.4 341,142 + -0.9 341,143 - -1.0 341,143 - -0.3 341,150 - +1.4 341,151 + -1.2 341,152 - -1.1 341,187 + -0.6 341,188 - -1.5 341,400 + HMPREF1078_RS16080 0.16 -1.4 341,497 - HMPREF1078_RS16080 0.22 -2.2 341,497 - HMPREF1078_RS16080 0.22 -1.4 341,497 - HMPREF1078_RS16080 0.22 -0.9 341,646 + HMPREF1078_RS16080 0.31 -1.4 341,647 - HMPREF1078_RS16080 0.31 -1.2 341,737 - HMPREF1078_RS16080 0.37 -2.0 341,841 - HMPREF1078_RS16080 0.43 -3.0 341,870 - HMPREF1078_RS16080 0.45 -1.2 341,875 - HMPREF1078_RS16080 0.45 -2.9 342,054 + HMPREF1078_RS16080 0.57 -1.0 342,055 - HMPREF1078_RS16080 0.57 -0.4 342,141 + HMPREF1078_RS16080 0.62 -2.0 342,141 + HMPREF1078_RS16080 0.62 +0.4 342,141 + HMPREF1078_RS16080 0.62 -2.5 342,142 - HMPREF1078_RS16080 0.62 -0.6 342,143 + HMPREF1078_RS16080 0.62 -2.6 342,143 + HMPREF1078_RS16080 0.62 -1.4 342,143 + HMPREF1078_RS16080 0.62 +0.4 342,143 + HMPREF1078_RS16080 0.62 -0.6 342,144 - HMPREF1078_RS16080 0.62 -2.6 342,144 - HMPREF1078_RS16080 0.62 -0.5 342,188 - HMPREF1078_RS16080 0.65 -0.0 342,427 + HMPREF1078_RS16080 0.80 -2.1 342,427 + HMPREF1078_RS16080 0.80 -0.9 342,428 - HMPREF1078_RS16080 0.80 -0.0 342,428 - HMPREF1078_RS16080 0.80 -2.0 342,428 - HMPREF1078_RS16080 0.80 -0.3 342,431 + HMPREF1078_RS16080 0.80 +0.4 342,432 - HMPREF1078_RS16080 0.80 -1.0 342,432 - HMPREF1078_RS16080 0.80 -2.6 342,432 - HMPREF1078_RS16080 0.80 -2.4 342,435 + HMPREF1078_RS16080 0.80 -3.3 342,480 + HMPREF1078_RS16080 0.83 -1.4 342,480 + HMPREF1078_RS16080 0.83 -0.0 342,481 - HMPREF1078_RS16080 0.83 -0.5 342,481 - HMPREF1078_RS16080 0.83 -3.0 342,481 - HMPREF1078_RS16080 0.83 +1.5 342,538 - HMPREF1078_RS16080 0.87 -1.9 342,538 - HMPREF1078_RS16080 0.87 -1.6 342,561 + HMPREF1078_RS16080 0.88 -0.0 342,597 + +0.5 342,681 + -0.3 342,754 - -3.0 342,772 + -1.0 342,802 + -1.2 342,804 + -2.0 342,804 + -1.0 342,805 - +1.0 342,805 - +1.0 342,805 - -0.6 342,805 - +0.7 342,856 - -0.2 342,856 - +0.2 342,888 + -1.9 342,890 + -0.6 342,891 - -0.0 342,896 + -0.2 342,896 + -0.6 342,896 + -1.2 342,901 + +0.3 342,932 + -0.3 342,964 - HMPREF1078_RS16085 0.12 -0.6 342,964 - HMPREF1078_RS16085 0.12 -0.6 342,982 - HMPREF1078_RS16085 0.14 -3.3 343,134 + HMPREF1078_RS16085 0.34 -2.2 343,149 + HMPREF1078_RS16085 0.36 +1.0 343,154 + HMPREF1078_RS16085 0.37 -0.3 343,154 + HMPREF1078_RS16085 0.37 +0.4 343,154 + HMPREF1078_RS16085 0.37 -2.4 343,155 - HMPREF1078_RS16085 0.37 +1.4 343,160 + HMPREF1078_RS16085 0.37 -0.5 343,161 - HMPREF1078_RS16085 0.38 -1.5 343,201 - HMPREF1078_RS16085 0.43 -1.8 343,201 - HMPREF1078_RS16085 0.43 +1.8 343,205 - HMPREF1078_RS16085 0.43 -2.2 343,205 - HMPREF1078_RS16085 0.43 +0.4 343,206 + HMPREF1078_RS16085 0.43 -0.2 343,207 - HMPREF1078_RS16085 0.44 -0.9 343,210 + HMPREF1078_RS16085 0.44 +1.0 343,257 + HMPREF1078_RS16085 0.50 +2.0 343,257 + HMPREF1078_RS16085 0.50 +1.5 343,258 - HMPREF1078_RS16085 0.50 -0.0 343,318 + HMPREF1078_RS16085 0.58 -1.6 343,319 - HMPREF1078_RS16085 0.58 -0.0 343,322 + HMPREF1078_RS16085 0.59 -1.0 343,322 + HMPREF1078_RS16085 0.59 +0.4 343,381 + HMPREF1078_RS16085 0.66 +1.8 343,381 + HMPREF1078_RS16085 0.66 +0.0 343,382 - HMPREF1078_RS16085 0.66 -1.4 343,382 - HMPREF1078_RS16085 0.66 +0.5 343,383 + HMPREF1078_RS16085 0.67 -0.3 343,383 + HMPREF1078_RS16085 0.67 -1.9 343,384 - HMPREF1078_RS16085 0.67 -0.3 343,427 + HMPREF1078_RS16085 0.72 -0.6 343,428 - HMPREF1078_RS16085 0.72 -0.0 343,428 - HMPREF1078_RS16085 0.72 +0.3 343,452 + HMPREF1078_RS16085 0.76 -2.2 343,452 + HMPREF1078_RS16085 0.76 -1.6 343,453 - HMPREF1078_RS16085 0.76 +1.0 343,453 - HMPREF1078_RS16085 0.76 +0.1 343,582 + -3.4 343,664 + +0.4 343,695 + +0.7 343,696 - -1.0 343,696 - +1.4 343,741 + +1.1 343,741 + -0.9 343,741 + -0.1 343,742 - -0.4
Or see this region's nucleotide sequence