Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15570 and HMPREF1078_RS15575 are separated by 276 nucleotides HMPREF1078_RS15575 and HMPREF1078_RS15580 are separated by 79 nucleotides HMPREF1078_RS15580 and HMPREF1078_RS15585 are separated by 105 nucleotides
HMPREF1078_RS15570: HMPREF1078_RS15570 - N-acetylglucosamine-6-phosphate deacetylase, at 221,942 to 223,102
_RS15570
HMPREF1078_RS15575: HMPREF1078_RS15575 - glucosamine-6-phosphate deaminase, at 223,379 to 225,358
_RS15575
HMPREF1078_RS15580: HMPREF1078_RS15580 - DUF4251 domain-containing protein, at 225,438 to 226,031
_RS15580
HMPREF1078_RS15585: HMPREF1078_RS15585 - 2-phosphosulfolactate phosphatase, at 226,137 to 226,850
_RS15585
Position (kb) 223
224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.394 kb on + strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.400 kb on + strand, within HMPREF1078_RS15570 at 222.422 kb on - strand, within HMPREF1078_RS15570 at 222.549 kb on - strand, within HMPREF1078_RS15570 at 222.581 kb on + strand, within HMPREF1078_RS15570 at 222.582 kb on - strand, within HMPREF1078_RS15570 at 222.617 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.703 kb on + strand, within HMPREF1078_RS15570 at 222.722 kb on + strand, within HMPREF1078_RS15570 at 222.722 kb on + strand, within HMPREF1078_RS15570 at 222.724 kb on + strand, within HMPREF1078_RS15570 at 222.811 kb on + strand, within HMPREF1078_RS15570 at 222.811 kb on + strand, within HMPREF1078_RS15570 at 222.812 kb on - strand, within HMPREF1078_RS15570 at 222.814 kb on + strand, within HMPREF1078_RS15570 at 222.868 kb on + strand, within HMPREF1078_RS15570 at 222.985 kb on + strand, within HMPREF1078_RS15570 at 223.090 kb on + strand at 223.090 kb on + strand at 223.090 kb on + strand at 223.090 kb on + strand at 223.222 kb on - strand at 223.222 kb on - strand at 223.260 kb on + strand at 223.260 kb on + strand at 223.282 kb on - strand at 223.310 kb on - strand at 223.310 kb on - strand at 223.326 kb on + strand at 223.326 kb on + strand at 223.329 kb on + strand at 223.329 kb on + strand at 223.331 kb on + strand at 223.347 kb on + strand at 223.352 kb on + strand at 223.352 kb on + strand at 223.353 kb on - strand at 223.353 kb on - strand at 223.354 kb on + strand at 223.355 kb on - strand at 223.357 kb on + strand at 223.357 kb on + strand at 223.359 kb on + strand at 223.374 kb on + strand at 223.393 kb on + strand at 223.393 kb on + strand at 223.394 kb on - strand at 223.499 kb on + strand at 223.542 kb on + strand at 223.623 kb on + strand, within HMPREF1078_RS15575 at 223.623 kb on + strand, within HMPREF1078_RS15575 at 223.624 kb on - strand, within HMPREF1078_RS15575 at 223.624 kb on - strand, within HMPREF1078_RS15575 at 223.624 kb on - strand, within HMPREF1078_RS15575 at 223.624 kb on - strand, within HMPREF1078_RS15575 at 223.626 kb on - strand, within HMPREF1078_RS15575 at 223.626 kb on - strand, within HMPREF1078_RS15575 at 223.627 kb on + strand, within HMPREF1078_RS15575 at 223.628 kb on - strand, within HMPREF1078_RS15575 at 223.642 kb on + strand, within HMPREF1078_RS15575 at 223.649 kb on - strand, within HMPREF1078_RS15575 at 223.766 kb on - strand, within HMPREF1078_RS15575 at 223.770 kb on - strand, within HMPREF1078_RS15575 at 223.791 kb on - strand, within HMPREF1078_RS15575 at 223.881 kb on - strand, within HMPREF1078_RS15575 at 223.882 kb on + strand, within HMPREF1078_RS15575 at 223.882 kb on + strand, within HMPREF1078_RS15575 at 223.883 kb on - strand, within HMPREF1078_RS15575 at 223.883 kb on - strand, within HMPREF1078_RS15575 at 223.915 kb on + strand, within HMPREF1078_RS15575 at 223.915 kb on + strand, within HMPREF1078_RS15575 at 223.916 kb on - strand, within HMPREF1078_RS15575 at 223.999 kb on + strand, within HMPREF1078_RS15575 at 224.053 kb on + strand, within HMPREF1078_RS15575 at 224.101 kb on + strand, within HMPREF1078_RS15575 at 224.176 kb on + strand, within HMPREF1078_RS15575 at 224.177 kb on - strand, within HMPREF1078_RS15575 at 224.177 kb on - strand, within HMPREF1078_RS15575 at 224.194 kb on - strand, within HMPREF1078_RS15575 at 224.227 kb on + strand, within HMPREF1078_RS15575 at 224.227 kb on + strand, within HMPREF1078_RS15575 at 224.248 kb on + strand, within HMPREF1078_RS15575 at 224.267 kb on - strand, within HMPREF1078_RS15575 at 224.346 kb on - strand, within HMPREF1078_RS15575 at 224.382 kb on - strand, within HMPREF1078_RS15575 at 224.396 kb on - strand, within HMPREF1078_RS15575 at 224.396 kb on - strand, within HMPREF1078_RS15575 at 224.413 kb on - strand, within HMPREF1078_RS15575 at 224.547 kb on + strand, within HMPREF1078_RS15575 at 224.563 kb on + strand, within HMPREF1078_RS15575 at 224.563 kb on + strand, within HMPREF1078_RS15575 at 224.598 kb on + strand, within HMPREF1078_RS15575 at 224.599 kb on - strand, within HMPREF1078_RS15575 at 224.609 kb on + strand, within HMPREF1078_RS15575 at 224.650 kb on - strand, within HMPREF1078_RS15575 at 224.692 kb on + strand, within HMPREF1078_RS15575 at 224.693 kb on - strand, within HMPREF1078_RS15575 at 224.857 kb on + strand, within HMPREF1078_RS15575 at 224.882 kb on + strand, within HMPREF1078_RS15575 at 224.882 kb on + strand, within HMPREF1078_RS15575 at 225.019 kb on + strand, within HMPREF1078_RS15575 at 225.019 kb on - strand, within HMPREF1078_RS15575 at 225.019 kb on - strand, within HMPREF1078_RS15575 at 225.019 kb on - strand, within HMPREF1078_RS15575 at 225.019 kb on - strand, within HMPREF1078_RS15575 at 225.096 kb on - strand, within HMPREF1078_RS15575 at 225.148 kb on + strand, within HMPREF1078_RS15575 at 225.149 kb on - strand, within HMPREF1078_RS15575 at 225.149 kb on - strand, within HMPREF1078_RS15575 at 225.300 kb on + strand at 225.301 kb on - strand at 225.315 kb on - strand at 225.337 kb on - strand at 225.341 kb on + strand at 225.341 kb on + strand at 225.423 kb on + strand at 225.424 kb on - strand at 225.426 kb on + strand at 225.426 kb on + strand at 225.427 kb on - strand at 225.427 kb on - strand at 225.428 kb on + strand at 225.428 kb on + strand at 225.428 kb on + strand at 225.429 kb on - strand at 225.429 kb on - strand at 225.429 kb on - strand at 225.429 kb on - strand at 225.430 kb on + strand at 225.430 kb on + strand at 225.430 kb on + strand at 225.430 kb on + strand at 225.430 kb on + strand at 225.430 kb on + strand at 225.431 kb on - strand at 225.431 kb on - strand at 225.431 kb on - strand at 225.432 kb on + strand at 225.432 kb on + strand at 225.432 kb on + strand at 225.433 kb on - strand at 225.439 kb on + strand at 225.440 kb on - strand at 225.440 kb on - strand at 225.442 kb on + strand at 225.442 kb on + strand at 225.443 kb on - strand at 225.545 kb on + strand, within HMPREF1078_RS15580 at 225.559 kb on + strand, within HMPREF1078_RS15580 at 225.560 kb on - strand, within HMPREF1078_RS15580 at 225.560 kb on - strand, within HMPREF1078_RS15580 at 225.588 kb on - strand, within HMPREF1078_RS15580 at 225.593 kb on + strand, within HMPREF1078_RS15580 at 225.593 kb on + strand, within HMPREF1078_RS15580 at 225.593 kb on + strand, within HMPREF1078_RS15580 at 225.593 kb on + strand, within HMPREF1078_RS15580 at 225.594 kb on - strand, within HMPREF1078_RS15580 at 225.617 kb on - strand, within HMPREF1078_RS15580 at 225.649 kb on - strand, within HMPREF1078_RS15580 at 225.669 kb on + strand, within HMPREF1078_RS15580 at 225.669 kb on + strand, within HMPREF1078_RS15580 at 225.670 kb on - strand, within HMPREF1078_RS15580 at 225.670 kb on - strand, within HMPREF1078_RS15580 at 225.670 kb on - strand, within HMPREF1078_RS15580 at 225.762 kb on - strand, within HMPREF1078_RS15580 at 225.774 kb on + strand, within HMPREF1078_RS15580 at 225.775 kb on - strand, within HMPREF1078_RS15580 at 225.778 kb on + strand, within HMPREF1078_RS15580 at 225.781 kb on + strand, within HMPREF1078_RS15580 at 225.805 kb on - strand, within HMPREF1078_RS15580 at 225.891 kb on - strand, within HMPREF1078_RS15580 at 225.891 kb on - strand, within HMPREF1078_RS15580 at 225.894 kb on + strand, within HMPREF1078_RS15580 at 225.953 kb on + strand, within HMPREF1078_RS15580 at 226.014 kb on - strand at 226.014 kb on - strand at 226.014 kb on - strand at 226.014 kb on - strand at 226.014 kb on - strand at 226.017 kb on + strand at 226.017 kb on + strand at 226.068 kb on - strand at 226.120 kb on + strand at 226.121 kb on - strand at 226.122 kb on + strand at 226.123 kb on - strand at 226.144 kb on + strand at 226.144 kb on + strand at 226.144 kb on + strand at 226.168 kb on + strand at 226.179 kb on + strand at 226.305 kb on + strand, within HMPREF1078_RS15585 at 226.305 kb on + strand, within HMPREF1078_RS15585 at 226.305 kb on + strand, within HMPREF1078_RS15585 at 226.305 kb on + strand, within HMPREF1078_RS15585 at 226.305 kb on + strand, within HMPREF1078_RS15585 at 226.306 kb on - strand, within HMPREF1078_RS15585 at 226.306 kb on - strand, within HMPREF1078_RS15585 at 226.306 kb on - strand, within HMPREF1078_RS15585 at 226.306 kb on - strand, within HMPREF1078_RS15585 at 226.308 kb on - strand, within HMPREF1078_RS15585
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 222,393 - HMPREF1078_RS15570 0.39 -0.0 222,393 - HMPREF1078_RS15570 0.39 +0.0 222,393 - HMPREF1078_RS15570 0.39 -0.5 222,393 - HMPREF1078_RS15570 0.39 -0.5 222,394 + HMPREF1078_RS15570 0.39 -1.0 222,395 - HMPREF1078_RS15570 0.39 +1.5 222,395 - HMPREF1078_RS15570 0.39 -0.2 222,395 - HMPREF1078_RS15570 0.39 -0.1 222,395 - HMPREF1078_RS15570 0.39 -1.6 222,395 - HMPREF1078_RS15570 0.39 -1.9 222,395 - HMPREF1078_RS15570 0.39 -0.0 222,400 + HMPREF1078_RS15570 0.39 -0.8 222,422 - HMPREF1078_RS15570 0.41 +1.0 222,549 - HMPREF1078_RS15570 0.52 +2.5 222,581 + HMPREF1078_RS15570 0.55 -1.6 222,582 - HMPREF1078_RS15570 0.55 -1.2 222,617 + HMPREF1078_RS15570 0.58 +0.0 222,661 + HMPREF1078_RS15570 0.62 -2.5 222,661 + HMPREF1078_RS15570 0.62 -0.2 222,661 + HMPREF1078_RS15570 0.62 -1.9 222,661 + HMPREF1078_RS15570 0.62 +0.5 222,703 + HMPREF1078_RS15570 0.66 +0.1 222,722 + HMPREF1078_RS15570 0.67 -0.0 222,722 + HMPREF1078_RS15570 0.67 +1.5 222,724 + HMPREF1078_RS15570 0.67 +1.0 222,811 + HMPREF1078_RS15570 0.75 -1.0 222,811 + HMPREF1078_RS15570 0.75 -1.9 222,812 - HMPREF1078_RS15570 0.75 +0.2 222,814 + HMPREF1078_RS15570 0.75 -0.4 222,868 + HMPREF1078_RS15570 0.80 -0.6 222,985 + HMPREF1078_RS15570 0.90 -0.1 223,090 + -0.5 223,090 + -2.0 223,090 + -1.4 223,090 + +0.5 223,222 - +0.0 223,222 - -0.0 223,260 + +0.3 223,260 + -0.0 223,282 - +0.0 223,310 - -2.4 223,310 - -0.6 223,326 + -0.3 223,326 + -0.5 223,329 + +3.0 223,329 + -0.3 223,331 + +0.4 223,347 + -1.4 223,352 + +0.2 223,352 + -1.4 223,353 - -2.0 223,353 - -2.4 223,354 + -2.2 223,355 - -2.6 223,357 + +0.0 223,357 + +0.2 223,359 + -1.0 223,374 + -2.5 223,393 + -1.4 223,393 + -0.6 223,394 - -2.5 223,499 + -1.0 223,542 + -1.0 223,623 + HMPREF1078_RS15575 0.12 -3.0 223,623 + HMPREF1078_RS15575 0.12 -0.0 223,624 - HMPREF1078_RS15575 0.12 -3.7 223,624 - HMPREF1078_RS15575 0.12 -3.1 223,624 - HMPREF1078_RS15575 0.12 -2.0 223,624 - HMPREF1078_RS15575 0.12 -1.0 223,626 - HMPREF1078_RS15575 0.12 -1.0 223,626 - HMPREF1078_RS15575 0.12 -1.0 223,627 + HMPREF1078_RS15575 0.13 -1.9 223,628 - HMPREF1078_RS15575 0.13 -2.0 223,642 + HMPREF1078_RS15575 0.13 -3.4 223,649 - HMPREF1078_RS15575 0.14 -2.1 223,766 - HMPREF1078_RS15575 0.20 +1.0 223,770 - HMPREF1078_RS15575 0.20 -1.0 223,791 - HMPREF1078_RS15575 0.21 -2.0 223,881 - HMPREF1078_RS15575 0.25 -1.9 223,882 + HMPREF1078_RS15575 0.25 -3.1 223,882 + HMPREF1078_RS15575 0.25 -2.6 223,883 - HMPREF1078_RS15575 0.25 -3.4 223,883 - HMPREF1078_RS15575 0.25 -3.1 223,915 + HMPREF1078_RS15575 0.27 -1.2 223,915 + HMPREF1078_RS15575 0.27 -0.2 223,916 - HMPREF1078_RS15575 0.27 -3.0 223,999 + HMPREF1078_RS15575 0.31 -2.2 224,053 + HMPREF1078_RS15575 0.34 -1.0 224,101 + HMPREF1078_RS15575 0.36 -1.4 224,176 + HMPREF1078_RS15575 0.40 -1.9 224,177 - HMPREF1078_RS15575 0.40 -2.0 224,177 - HMPREF1078_RS15575 0.40 -1.4 224,194 - HMPREF1078_RS15575 0.41 -3.6 224,227 + HMPREF1078_RS15575 0.43 -1.9 224,227 + HMPREF1078_RS15575 0.43 -3.3 224,248 + HMPREF1078_RS15575 0.44 -0.6 224,267 - HMPREF1078_RS15575 0.45 -1.6 224,346 - HMPREF1078_RS15575 0.49 -3.2 224,382 - HMPREF1078_RS15575 0.51 -1.4 224,396 - HMPREF1078_RS15575 0.51 -2.6 224,396 - HMPREF1078_RS15575 0.51 +1.0 224,413 - HMPREF1078_RS15575 0.52 -1.4 224,547 + HMPREF1078_RS15575 0.59 -0.5 224,563 + HMPREF1078_RS15575 0.60 -3.2 224,563 + HMPREF1078_RS15575 0.60 -1.4 224,598 + HMPREF1078_RS15575 0.62 -2.5 224,599 - HMPREF1078_RS15575 0.62 -3.6 224,609 + HMPREF1078_RS15575 0.62 -1.7 224,650 - HMPREF1078_RS15575 0.64 -3.0 224,692 + HMPREF1078_RS15575 0.66 -1.0 224,693 - HMPREF1078_RS15575 0.66 -2.0 224,857 + HMPREF1078_RS15575 0.75 +0.1 224,882 + HMPREF1078_RS15575 0.76 -1.0 224,882 + HMPREF1078_RS15575 0.76 +1.0 225,019 + HMPREF1078_RS15575 0.83 -2.6 225,019 - HMPREF1078_RS15575 0.83 -0.0 225,019 - HMPREF1078_RS15575 0.83 -2.0 225,019 - HMPREF1078_RS15575 0.83 -2.2 225,019 - HMPREF1078_RS15575 0.83 -2.4 225,096 - HMPREF1078_RS15575 0.87 -1.0 225,148 + HMPREF1078_RS15575 0.89 -1.4 225,149 - HMPREF1078_RS15575 0.89 -1.6 225,149 - HMPREF1078_RS15575 0.89 -2.4 225,300 + -0.0 225,301 - -2.4 225,315 - -2.5 225,337 - -0.9 225,341 + -3.2 225,341 + -1.6 225,423 + +0.0 225,424 - +1.2 225,426 + -0.0 225,426 + +0.8 225,427 - -0.6 225,427 - +0.6 225,428 + +0.7 225,428 + -0.6 225,428 + -0.6 225,429 - -1.9 225,429 - +0.6 225,429 - +1.1 225,429 - -1.9 225,430 + -0.2 225,430 + +2.0 225,430 + -0.4 225,430 + +0.0 225,430 + -0.2 225,430 + +0.9 225,431 - +0.1 225,431 - +0.4 225,431 - -0.2 225,432 + +0.6 225,432 + -0.5 225,432 + +0.4 225,433 - +1.8 225,439 + +0.8 225,440 - -0.5 225,440 - -1.2 225,442 + -0.0 225,442 + -0.2 225,443 - +0.5 225,545 + HMPREF1078_RS15580 0.18 +0.5 225,559 + HMPREF1078_RS15580 0.20 -0.1 225,560 - HMPREF1078_RS15580 0.21 -0.9 225,560 - HMPREF1078_RS15580 0.21 +1.7 225,588 - HMPREF1078_RS15580 0.25 +0.6 225,593 + HMPREF1078_RS15580 0.26 -1.9 225,593 + HMPREF1078_RS15580 0.26 -3.3 225,593 + HMPREF1078_RS15580 0.26 -0.5 225,593 + HMPREF1078_RS15580 0.26 -1.6 225,594 - HMPREF1078_RS15580 0.26 -2.6 225,617 - HMPREF1078_RS15580 0.30 -0.1 225,649 - HMPREF1078_RS15580 0.36 +1.1 225,669 + HMPREF1078_RS15580 0.39 +1.1 225,669 + HMPREF1078_RS15580 0.39 +0.3 225,670 - HMPREF1078_RS15580 0.39 -0.0 225,670 - HMPREF1078_RS15580 0.39 -0.0 225,670 - HMPREF1078_RS15580 0.39 -0.9 225,762 - HMPREF1078_RS15580 0.55 +1.1 225,774 + HMPREF1078_RS15580 0.57 +0.8 225,775 - HMPREF1078_RS15580 0.57 -0.1 225,778 + HMPREF1078_RS15580 0.57 +0.6 225,781 + HMPREF1078_RS15580 0.58 -0.1 225,805 - HMPREF1078_RS15580 0.62 +2.0 225,891 - HMPREF1078_RS15580 0.76 +0.4 225,891 - HMPREF1078_RS15580 0.76 -2.9 225,894 + HMPREF1078_RS15580 0.77 -0.0 225,953 + HMPREF1078_RS15580 0.87 +1.1 226,014 - -0.2 226,014 - +0.4 226,014 - +0.7 226,014 - -0.0 226,014 - -1.2 226,017 + +2.7 226,017 + +1.1 226,068 - +0.8 226,120 + +0.5 226,121 - -0.0 226,122 + -0.5 226,123 - +0.2 226,144 + +1.5 226,144 + -0.2 226,144 + +0.1 226,168 + +0.3 226,179 + +0.5 226,305 + HMPREF1078_RS15585 0.24 +1.6 226,305 + HMPREF1078_RS15585 0.24 +0.9 226,305 + HMPREF1078_RS15585 0.24 +0.4 226,305 + HMPREF1078_RS15585 0.24 -1.1 226,305 + HMPREF1078_RS15585 0.24 -1.9 226,306 - HMPREF1078_RS15585 0.24 -0.4 226,306 - HMPREF1078_RS15585 0.24 -0.0 226,306 - HMPREF1078_RS15585 0.24 +0.2 226,306 - HMPREF1078_RS15585 0.24 -0.3 226,308 - HMPREF1078_RS15585 0.24 +0.6
Or see this region's nucleotide sequence