Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15325 and HMPREF1078_RS15330 are separated by 181 nucleotides HMPREF1078_RS15330 and HMPREF1078_RS15335 are separated by 77 nucleotides HMPREF1078_RS15335 and HMPREF1078_RS15340 are separated by 262 nucleotides
HMPREF1078_RS15325: HMPREF1078_RS15325 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 151,698 to 153,209
_RS15325
HMPREF1078_RS15330: HMPREF1078_RS15330 - tRNA-Gly, at 153,391 to 153,463
_RS15330
HMPREF1078_RS15335: HMPREF1078_RS15335 - acetylglutamate kinase, at 153,541 to 154,308
_RS15335
HMPREF1078_RS15340: HMPREF1078_RS15340 - ATP-binding cassette domain-containing protein, at 154,571 to 156,040
_RS15340
Position (kb) 153
154
155 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 152.560 kb on - strand, within HMPREF1078_RS15325 at 152.587 kb on - strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.773 kb on - strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.063 kb on - strand at 153.102 kb on - strand at 153.106 kb on - strand at 153.124 kb on - strand at 153.161 kb on + strand at 153.163 kb on + strand at 153.164 kb on - strand at 153.164 kb on - strand at 153.168 kb on - strand at 153.185 kb on + strand at 153.186 kb on - strand at 153.199 kb on - strand at 153.199 kb on - strand at 153.204 kb on + strand at 153.209 kb on + strand at 153.210 kb on - strand at 153.210 kb on - strand at 153.214 kb on - strand at 153.214 kb on - strand at 153.241 kb on - strand at 153.248 kb on + strand at 153.249 kb on - strand at 153.257 kb on + strand at 153.287 kb on - strand at 153.320 kb on - strand at 153.443 kb on + strand, within HMPREF1078_RS15330 at 153.458 kb on + strand at 153.534 kb on + strand at 153.536 kb on + strand at 153.537 kb on - strand at 153.537 kb on - strand at 153.552 kb on - strand at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.639 kb on + strand, within HMPREF1078_RS15335 at 153.640 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.812 kb on + strand, within HMPREF1078_RS15335 at 153.817 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.957 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.011 kb on + strand, within HMPREF1078_RS15335 at 154.145 kb on + strand, within HMPREF1078_RS15335 at 154.153 kb on - strand, within HMPREF1078_RS15335 at 154.169 kb on - strand, within HMPREF1078_RS15335 at 154.207 kb on - strand, within HMPREF1078_RS15335 at 154.371 kb on + strand at 154.376 kb on - strand at 154.390 kb on + strand at 154.390 kb on + strand at 154.391 kb on - strand at 154.391 kb on - strand at 154.401 kb on + strand at 154.401 kb on + strand at 154.410 kb on + strand at 154.410 kb on + strand at 154.446 kb on - strand at 154.446 kb on - strand at 154.446 kb on - strand at 154.464 kb on - strand at 154.482 kb on + strand at 154.482 kb on + strand at 154.482 kb on + strand at 154.482 kb on + strand at 154.483 kb on - strand at 154.483 kb on - strand at 154.483 kb on - strand at 154.484 kb on + strand at 154.484 kb on + strand at 154.485 kb on - strand at 154.493 kb on + strand at 154.493 kb on + strand at 154.493 kb on + strand at 154.494 kb on - strand at 154.499 kb on + strand at 154.499 kb on + strand at 154.506 kb on + strand at 154.507 kb on - strand at 154.558 kb on + strand at 154.659 kb on + strand at 154.659 kb on + strand at 154.659 kb on + strand at 154.790 kb on - strand, within HMPREF1078_RS15340 at 154.804 kb on + strand, within HMPREF1078_RS15340 at 154.814 kb on - strand, within HMPREF1078_RS15340 at 154.823 kb on + strand, within HMPREF1078_RS15340 at 154.823 kb on + strand, within HMPREF1078_RS15340 at 154.823 kb on + strand, within HMPREF1078_RS15340 at 154.824 kb on - strand, within HMPREF1078_RS15340 at 154.824 kb on - strand, within HMPREF1078_RS15340 at 154.824 kb on - strand, within HMPREF1078_RS15340 at 154.844 kb on - strand, within HMPREF1078_RS15340 at 154.851 kb on - strand, within HMPREF1078_RS15340 at 154.900 kb on - strand, within HMPREF1078_RS15340 at 154.906 kb on + strand, within HMPREF1078_RS15340 at 154.916 kb on - strand, within HMPREF1078_RS15340 at 154.950 kb on + strand, within HMPREF1078_RS15340 at 154.950 kb on + strand, within HMPREF1078_RS15340 at 154.965 kb on + strand, within HMPREF1078_RS15340 at 154.966 kb on - strand, within HMPREF1078_RS15340 at 155.035 kb on + strand, within HMPREF1078_RS15340 at 155.035 kb on + strand, within HMPREF1078_RS15340 at 155.036 kb on - strand, within HMPREF1078_RS15340 at 155.065 kb on - strand, within HMPREF1078_RS15340 at 155.185 kb on + strand, within HMPREF1078_RS15340 at 155.188 kb on - strand, within HMPREF1078_RS15340 at 155.201 kb on - strand, within HMPREF1078_RS15340 at 155.280 kb on + strand, within HMPREF1078_RS15340 at 155.290 kb on - strand, within HMPREF1078_RS15340
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 152,560 - HMPREF1078_RS15325 0.57 -3.4 152,587 - HMPREF1078_RS15325 0.59 -1.7 152,765 + HMPREF1078_RS15325 0.71 -3.9 152,765 + HMPREF1078_RS15325 0.71 -0.1 152,767 + HMPREF1078_RS15325 0.71 -3.5 152,767 + HMPREF1078_RS15325 0.71 -1.9 152,768 - HMPREF1078_RS15325 0.71 -3.0 152,768 - HMPREF1078_RS15325 0.71 -2.5 152,768 - HMPREF1078_RS15325 0.71 -1.7 152,773 - HMPREF1078_RS15325 0.71 -3.2 153,054 + HMPREF1078_RS15325 0.90 +0.9 153,054 + HMPREF1078_RS15325 0.90 -1.7 153,063 - +0.9 153,102 - -5.3 153,106 - -0.1 153,124 - -1.4 153,161 + -2.8 153,163 + -2.2 153,164 - -1.9 153,164 - -2.2 153,168 - -0.7 153,185 + -1.9 153,186 - -2.5 153,199 - -3.8 153,199 - +0.9 153,204 + -2.8 153,209 + -3.2 153,210 - -1.2 153,210 - -2.7 153,214 - +0.9 153,214 - +1.2 153,241 - +0.8 153,248 + -1.4 153,249 - -0.1 153,257 + -0.1 153,287 - +0.2 153,320 - -0.7 153,443 + HMPREF1078_RS15330 0.71 -2.2 153,458 + -2.1 153,534 + -0.1 153,536 + -0.7 153,537 - -0.9 153,537 - -0.7 153,552 - -2.8 153,630 - HMPREF1078_RS15335 0.12 -0.7 153,630 - HMPREF1078_RS15335 0.12 -0.5 153,639 + HMPREF1078_RS15335 0.13 -0.7 153,640 - HMPREF1078_RS15335 0.13 -1.1 153,757 - HMPREF1078_RS15335 0.28 +0.9 153,757 - HMPREF1078_RS15335 0.28 -0.9 153,812 + HMPREF1078_RS15335 0.35 -2.9 153,817 - HMPREF1078_RS15335 0.36 -0.4 153,893 - HMPREF1078_RS15335 0.46 -1.9 153,893 - HMPREF1078_RS15335 0.46 -2.2 153,957 + HMPREF1078_RS15335 0.54 -2.5 154,002 + HMPREF1078_RS15335 0.60 -2.2 154,002 + HMPREF1078_RS15335 0.60 -3.8 154,003 - HMPREF1078_RS15335 0.60 -1.1 154,003 - HMPREF1078_RS15335 0.60 -4.2 154,003 - HMPREF1078_RS15335 0.60 -1.4 154,011 + HMPREF1078_RS15335 0.61 -2.0 154,145 + HMPREF1078_RS15335 0.79 -1.1 154,153 - HMPREF1078_RS15335 0.80 -1.9 154,169 - HMPREF1078_RS15335 0.82 -1.7 154,207 - HMPREF1078_RS15335 0.87 -2.8 154,371 + -0.3 154,376 - +0.3 154,390 + +0.2 154,390 + +0.3 154,391 - -0.1 154,391 - +0.5 154,401 + -0.3 154,401 + -2.2 154,410 + +0.9 154,410 + +1.2 154,446 - -0.4 154,446 - +0.2 154,446 - -2.1 154,464 - +0.9 154,482 + -2.0 154,482 + -2.0 154,482 + +0.3 154,482 + +1.9 154,483 - +1.8 154,483 - +0.8 154,483 - +1.0 154,484 + +1.1 154,484 + +0.1 154,485 - +0.5 154,493 + +0.2 154,493 + -1.1 154,493 + -0.5 154,494 - -2.8 154,499 + -0.4 154,499 + -0.9 154,506 + -1.1 154,507 - -0.3 154,558 + +0.7 154,659 + -1.2 154,659 + +0.5 154,659 + -0.5 154,790 - HMPREF1078_RS15340 0.15 -0.0 154,804 + HMPREF1078_RS15340 0.16 -0.5 154,814 - HMPREF1078_RS15340 0.17 -1.6 154,823 + HMPREF1078_RS15340 0.17 -0.1 154,823 + HMPREF1078_RS15340 0.17 +0.6 154,823 + HMPREF1078_RS15340 0.17 +1.0 154,824 - HMPREF1078_RS15340 0.17 +1.2 154,824 - HMPREF1078_RS15340 0.17 +0.7 154,824 - HMPREF1078_RS15340 0.17 -0.2 154,844 - HMPREF1078_RS15340 0.19 -2.4 154,851 - HMPREF1078_RS15340 0.19 -0.1 154,900 - HMPREF1078_RS15340 0.22 +1.1 154,906 + HMPREF1078_RS15340 0.23 -0.3 154,916 - HMPREF1078_RS15340 0.23 +0.3 154,950 + HMPREF1078_RS15340 0.26 +0.6 154,950 + HMPREF1078_RS15340 0.26 -0.8 154,965 + HMPREF1078_RS15340 0.27 +0.9 154,966 - HMPREF1078_RS15340 0.27 -0.5 155,035 + HMPREF1078_RS15340 0.32 -1.1 155,035 + HMPREF1078_RS15340 0.32 +2.2 155,036 - HMPREF1078_RS15340 0.32 +0.2 155,065 - HMPREF1078_RS15340 0.34 +0.2 155,185 + HMPREF1078_RS15340 0.42 -0.6 155,188 - HMPREF1078_RS15340 0.42 +0.0 155,201 - HMPREF1078_RS15340 0.43 +0.5 155,280 + HMPREF1078_RS15340 0.48 +0.9 155,290 - HMPREF1078_RS15340 0.49 -0.3
Or see this region's nucleotide sequence