Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14670 and HMPREF1078_RS14675 are separated by 10 nucleotides HMPREF1078_RS14675 and HMPREF1078_RS14680 are separated by 99 nucleotides HMPREF1078_RS14680 and HMPREF1078_RS14685 are separated by 115 nucleotides HMPREF1078_RS14685 and HMPREF1078_RS14690 are separated by 83 nucleotides
HMPREF1078_RS14670: HMPREF1078_RS14670 - DUF4270 domain-containing protein, at 430,538 to 431,914
_RS14670
HMPREF1078_RS14675: HMPREF1078_RS14675 - glycogen/starch synthase, at 431,925 to 432,743
_RS14675
HMPREF1078_RS14680: HMPREF1078_RS14680 - pantoate--beta-alanine ligase, at 432,843 to 433,682
_RS14680
HMPREF1078_RS14685: HMPREF1078_RS14685 - aspartate 1-decarboxylase, at 433,798 to 434,169
_RS14685
HMPREF1078_RS14690: HMPREF1078_RS14690 - MATE family efflux transporter, at 434,253 to 435,575
_RS14690
Position (kb) 432
433
434 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 431.854 kb on + strand at 431.855 kb on - strand at 431.926 kb on + strand at 431.940 kb on + strand at 432.762 kb on - strand at 432.806 kb on - strand at 432.861 kb on - strand at 432.880 kb on - strand at 432.998 kb on - strand, within HMPREF1078_RS14680 at 433.029 kb on - strand, within HMPREF1078_RS14680 at 433.454 kb on + strand, within HMPREF1078_RS14680 at 433.455 kb on - strand, within HMPREF1078_RS14680 at 433.528 kb on + strand, within HMPREF1078_RS14680 at 433.541 kb on + strand, within HMPREF1078_RS14680 at 433.544 kb on + strand, within HMPREF1078_RS14680 at 433.557 kb on + strand, within HMPREF1078_RS14680 at 433.558 kb on - strand, within HMPREF1078_RS14680 at 433.558 kb on - strand, within HMPREF1078_RS14680 at 433.570 kb on + strand, within HMPREF1078_RS14680 at 433.571 kb on - strand, within HMPREF1078_RS14680 at 433.631 kb on + strand at 433.632 kb on - strand at 433.632 kb on - strand at 433.634 kb on + strand at 433.640 kb on - strand at 433.641 kb on + strand at 433.642 kb on - strand at 433.664 kb on - strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.671 kb on - strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.677 kb on + strand at 433.678 kb on - strand at 433.680 kb on + strand at 433.681 kb on - strand at 433.684 kb on + strand at 433.686 kb on + strand at 433.687 kb on - strand at 433.687 kb on - strand at 433.692 kb on + strand at 433.699 kb on + strand at 433.724 kb on + strand at 433.730 kb on + strand at 433.738 kb on - strand at 433.740 kb on - strand at 433.756 kb on + strand at 433.756 kb on + strand at 433.757 kb on - strand at 433.761 kb on - strand at 433.764 kb on + strand at 433.764 kb on + strand at 433.772 kb on - strand at 433.785 kb on + strand at 433.797 kb on + strand at 433.804 kb on - strand at 433.805 kb on + strand at 433.805 kb on + strand at 433.806 kb on - strand at 433.811 kb on + strand at 433.811 kb on + strand at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.862 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.866 kb on - strand, within HMPREF1078_RS14685 at 433.872 kb on + strand, within HMPREF1078_RS14685 at 433.872 kb on + strand, within HMPREF1078_RS14685 at 433.873 kb on - strand, within HMPREF1078_RS14685 at 433.933 kb on - strand, within HMPREF1078_RS14685 at 433.933 kb on - strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.970 kb on - strand, within HMPREF1078_RS14685 at 433.972 kb on - strand, within HMPREF1078_RS14685 at 434.055 kb on + strand, within HMPREF1078_RS14685 at 434.056 kb on - strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.059 kb on - strand, within HMPREF1078_RS14685 at 434.059 kb on - strand, within HMPREF1078_RS14685 at 434.100 kb on + strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.137 kb on - strand at 434.176 kb on + strand at 434.181 kb on + strand at 434.181 kb on + strand at 434.181 kb on + strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.184 kb on - strand at 434.184 kb on - strand at 434.247 kb on + strand at 434.250 kb on + strand at 434.250 kb on + strand at 434.250 kb on + strand at 434.251 kb on - strand at 434.252 kb on + strand at 434.252 kb on + strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.256 kb on + strand at 434.283 kb on - strand at 434.325 kb on - strand at 434.371 kb on + strand at 434.396 kb on - strand, within HMPREF1078_RS14690 at 434.396 kb on - strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.401 kb on - strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.403 kb on - strand, within HMPREF1078_RS14690 at 434.403 kb on - strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.436 kb on - strand, within HMPREF1078_RS14690 at 434.466 kb on - strand, within HMPREF1078_RS14690 at 434.482 kb on - strand, within HMPREF1078_RS14690 at 434.506 kb on + strand, within HMPREF1078_RS14690 at 434.507 kb on - strand, within HMPREF1078_RS14690 at 434.549 kb on + strand, within HMPREF1078_RS14690 at 434.577 kb on - strand, within HMPREF1078_RS14690
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 431,854 + -1.0 431,855 - +0.9 431,926 + -0.8 431,940 + -1.1 432,762 - +1.1 432,806 - +0.9 432,861 - -0.6 432,880 - +0.9 432,998 - HMPREF1078_RS14680 0.18 -0.1 433,029 - HMPREF1078_RS14680 0.22 -1.4 433,454 + HMPREF1078_RS14680 0.73 -0.6 433,455 - HMPREF1078_RS14680 0.73 -0.1 433,528 + HMPREF1078_RS14680 0.82 -1.6 433,541 + HMPREF1078_RS14680 0.83 -1.4 433,544 + HMPREF1078_RS14680 0.83 -2.4 433,557 + HMPREF1078_RS14680 0.85 -0.1 433,558 - HMPREF1078_RS14680 0.85 -1.4 433,558 - HMPREF1078_RS14680 0.85 -1.1 433,570 + HMPREF1078_RS14680 0.87 -0.6 433,571 - HMPREF1078_RS14680 0.87 +0.9 433,631 + -1.1 433,632 - -0.1 433,632 - +0.9 433,634 + -0.1 433,640 - -2.2 433,641 + -0.1 433,642 - -0.1 433,664 - -0.6 433,667 + -0.6 433,667 + -1.9 433,667 + -1.6 433,667 + -1.1 433,667 + +0.9 433,667 + +0.9 433,667 + -1.4 433,671 - -1.4 433,673 + -0.6 433,673 + -1.9 433,673 + -1.1 433,677 + -1.1 433,678 - -1.6 433,680 + -0.6 433,681 - -1.9 433,684 + -0.5 433,686 + -2.8 433,687 - -1.1 433,687 - -1.6 433,692 + -1.8 433,699 + +1.4 433,724 + -0.1 433,730 + +1.5 433,738 - -0.1 433,740 - -3.3 433,756 + +0.6 433,756 + +0.8 433,757 - -1.1 433,761 - -0.6 433,764 + -0.8 433,764 + +0.1 433,772 - -2.9 433,785 + -1.5 433,797 + -2.9 433,804 - -1.4 433,805 + -3.6 433,805 + -4.8 433,806 - -1.9 433,811 + -4.5 433,811 + -2.4 433,861 + HMPREF1078_RS14685 0.17 -3.6 433,861 + HMPREF1078_RS14685 0.17 -2.1 433,861 + HMPREF1078_RS14685 0.17 -3.8 433,861 + HMPREF1078_RS14685 0.17 -3.6 433,862 - HMPREF1078_RS14685 0.17 -3.0 433,864 - HMPREF1078_RS14685 0.18 -4.8 433,864 - HMPREF1078_RS14685 0.18 -1.9 433,864 - HMPREF1078_RS14685 0.18 -0.1 433,864 - HMPREF1078_RS14685 0.18 -2.4 433,864 - HMPREF1078_RS14685 0.18 -3.3 433,865 + HMPREF1078_RS14685 0.18 -2.4 433,865 + HMPREF1078_RS14685 0.18 -3.8 433,865 + HMPREF1078_RS14685 0.18 -3.1 433,866 - HMPREF1078_RS14685 0.18 -2.1 433,872 + HMPREF1078_RS14685 0.20 -4.4 433,872 + HMPREF1078_RS14685 0.20 -2.4 433,873 - HMPREF1078_RS14685 0.20 -4.3 433,933 - HMPREF1078_RS14685 0.36 -2.5 433,933 - HMPREF1078_RS14685 0.36 -2.5 433,944 + HMPREF1078_RS14685 0.39 -1.9 433,944 + HMPREF1078_RS14685 0.39 +0.9 433,944 + HMPREF1078_RS14685 0.39 -2.4 433,970 - HMPREF1078_RS14685 0.46 -1.4 433,972 - HMPREF1078_RS14685 0.47 -2.1 434,055 + HMPREF1078_RS14685 0.69 -2.8 434,056 - HMPREF1078_RS14685 0.69 -3.0 434,058 + HMPREF1078_RS14685 0.70 -3.9 434,058 + HMPREF1078_RS14685 0.70 -2.1 434,058 + HMPREF1078_RS14685 0.70 -3.8 434,058 + HMPREF1078_RS14685 0.70 -3.0 434,059 - HMPREF1078_RS14685 0.70 -3.0 434,059 - HMPREF1078_RS14685 0.70 -2.6 434,100 + HMPREF1078_RS14685 0.81 -2.5 434,101 - HMPREF1078_RS14685 0.81 -3.4 434,101 - HMPREF1078_RS14685 0.81 -3.1 434,101 - HMPREF1078_RS14685 0.81 -3.3 434,137 - -1.1 434,176 + +0.2 434,181 + +0.7 434,181 + -0.2 434,181 + -0.1 434,182 - -1.6 434,182 - -1.3 434,182 - +1.9 434,182 - -1.9 434,182 - +0.5 434,182 - -0.4 434,183 + -0.1 434,183 + -0.6 434,183 + +0.1 434,183 + +1.9 434,184 - +0.9 434,184 - +0.5 434,247 + +0.8 434,250 + +0.0 434,250 + -0.8 434,250 + -1.1 434,251 - +0.9 434,252 + -0.9 434,252 + -1.6 434,253 - +0.5 434,253 - -2.6 434,253 - +1.7 434,253 - -2.4 434,256 + +0.1 434,283 - +1.7 434,325 - +1.8 434,371 + +0.9 434,396 - HMPREF1078_RS14690 0.11 -0.1 434,396 - HMPREF1078_RS14690 0.11 -3.1 434,397 + HMPREF1078_RS14690 0.11 -0.6 434,397 + HMPREF1078_RS14690 0.11 +0.8 434,397 + HMPREF1078_RS14690 0.11 -0.6 434,401 - HMPREF1078_RS14690 0.11 -1.9 434,402 + HMPREF1078_RS14690 0.11 -1.4 434,402 + HMPREF1078_RS14690 0.11 -0.6 434,402 + HMPREF1078_RS14690 0.11 -0.2 434,402 + HMPREF1078_RS14690 0.11 -2.2 434,403 - HMPREF1078_RS14690 0.11 -0.5 434,403 - HMPREF1078_RS14690 0.11 +0.9 434,404 + HMPREF1078_RS14690 0.11 -0.7 434,404 + HMPREF1078_RS14690 0.11 +0.5 434,404 + HMPREF1078_RS14690 0.11 -0.3 434,404 + HMPREF1078_RS14690 0.11 +1.9 434,404 + HMPREF1078_RS14690 0.11 -0.6 434,405 - HMPREF1078_RS14690 0.11 +1.4 434,405 - HMPREF1078_RS14690 0.11 +0.4 434,405 - HMPREF1078_RS14690 0.11 -0.6 434,405 - HMPREF1078_RS14690 0.11 +0.9 434,436 - HMPREF1078_RS14690 0.14 +1.3 434,466 - HMPREF1078_RS14690 0.16 +0.4 434,482 - HMPREF1078_RS14690 0.17 -1.1 434,506 + HMPREF1078_RS14690 0.19 -1.0 434,507 - HMPREF1078_RS14690 0.19 -1.9 434,549 + HMPREF1078_RS14690 0.22 +0.5 434,577 - HMPREF1078_RS14690 0.24 -0.1
Or see this region's nucleotide sequence