Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14600 and HMPREF1078_RS14605 are separated by 10 nucleotides HMPREF1078_RS14605 and HMPREF1078_RS14610 are separated by 55 nucleotides HMPREF1078_RS14610 and HMPREF1078_RS14615 are separated by 76 nucleotides HMPREF1078_RS14615 and HMPREF1078_RS14620 are separated by 135 nucleotides
HMPREF1078_RS14600: HMPREF1078_RS14600 - tRNA-Gly, at 417,305 to 417,377
_RS14600
HMPREF1078_RS14605: HMPREF1078_RS14605 - tRNA-Tyr, at 417,388 to 417,470
_RS14605
HMPREF1078_RS14610: HMPREF1078_RS14610 - 6,7-dimethyl-8-ribityllumazine synthase, at 417,526 to 418,008
_RS14610
HMPREF1078_RS14615: HMPREF1078_RS14615 - tetratricopeptide repeat protein, at 418,085 to 418,771
_RS14615
HMPREF1078_RS14620: HMPREF1078_RS14620 - DNA replication and repair protein RecF, at 418,907 to 420,010
_RS14620
Position (kb) 418
419 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 417.091 kb on + strand at 417.139 kb on + strand at 417.139 kb on + strand at 417.139 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.141 kb on + strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.142 kb on - strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.145 kb on + strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.146 kb on - strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.147 kb on + strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.148 kb on - strand at 417.178 kb on + strand at 417.178 kb on + strand at 417.179 kb on - strand at 417.180 kb on + strand at 417.181 kb on - strand at 417.181 kb on - strand at 417.181 kb on - strand at 417.212 kb on + strand at 417.212 kb on + strand at 417.212 kb on + strand at 417.213 kb on - strand at 417.243 kb on + strand at 417.244 kb on - strand at 417.244 kb on - strand at 417.244 kb on - strand at 417.247 kb on + strand at 417.247 kb on + strand at 417.248 kb on - strand at 417.248 kb on - strand at 417.369 kb on + strand, within HMPREF1078_RS14600 at 417.499 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.070 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.174 kb on - strand, within HMPREF1078_RS14615 at 418.320 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.429 kb on - strand, within HMPREF1078_RS14615 at 418.580 kb on - strand, within HMPREF1078_RS14615 at 418.615 kb on - strand, within HMPREF1078_RS14615 at 418.662 kb on - strand, within HMPREF1078_RS14615 at 418.789 kb on - strand at 418.797 kb on - strand at 418.797 kb on - strand at 418.894 kb on + strand at 418.897 kb on + strand at 418.927 kb on + strand at 418.980 kb on + strand at 419.039 kb on + strand, within HMPREF1078_RS14620 at 419.068 kb on + strand, within HMPREF1078_RS14620 at 419.069 kb on - strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.132 kb on + strand, within HMPREF1078_RS14620 at 419.200 kb on + strand, within HMPREF1078_RS14620 at 419.280 kb on + strand, within HMPREF1078_RS14620 at 419.345 kb on + strand, within HMPREF1078_RS14620 at 419.361 kb on + strand, within HMPREF1078_RS14620 at 419.368 kb on + strand, within HMPREF1078_RS14620 at 419.459 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.501 kb on + strand, within HMPREF1078_RS14620 at 419.525 kb on + strand, within HMPREF1078_RS14620 at 419.570 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.647 kb on + strand, within HMPREF1078_RS14620 at 419.738 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 417,091 + +0.8 417,139 + -2.5 417,139 + +0.4 417,139 + +0.6 417,141 + -1.1 417,141 + -0.1 417,141 + +0.4 417,141 + -1.4 417,141 + -1.1 417,141 + -1.1 417,141 + -1.1 417,141 + +1.2 417,141 + -1.2 417,141 + -1.4 417,141 + +0.5 417,141 + -0.3 417,141 + +0.2 417,142 - -0.4 417,142 - -0.8 417,142 - -0.2 417,142 - +1.5 417,142 - -0.6 417,145 + +0.8 417,145 + -0.1 417,145 + +1.0 417,145 + +0.7 417,145 + +0.5 417,145 + -0.1 417,145 + -1.5 417,145 + -0.1 417,145 + -1.6 417,145 + +1.0 417,145 + -0.5 417,145 + -0.5 417,145 + -1.1 417,145 + -1.9 417,145 + -1.1 417,146 - -0.7 417,146 - -0.3 417,146 - +0.9 417,146 - -0.1 417,146 - -0.3 417,146 - +0.9 417,146 - -0.3 417,146 - -1.0 417,146 - +1.2 417,146 - -2.4 417,147 + -2.0 417,147 + +1.1 417,147 + +0.9 417,147 + -0.5 417,147 + -0.2 417,147 + +0.7 417,148 - -0.1 417,148 - -0.1 417,148 - -1.4 417,148 - -1.3 417,148 - +0.5 417,148 - +1.5 417,178 + +0.2 417,178 + +0.9 417,179 - -0.8 417,180 + -1.9 417,181 - +0.9 417,181 - +0.3 417,181 - +0.5 417,212 + -0.1 417,212 + -0.1 417,212 + -1.3 417,213 - +1.9 417,243 + -0.5 417,244 - -1.1 417,244 - -1.4 417,244 - +0.4 417,247 + -0.6 417,247 + -0.7 417,248 - +0.5 417,248 - +0.7 417,369 + HMPREF1078_RS14600 0.88 -0.3 417,499 - -0.6 418,060 - -3.9 418,060 - +1.2 418,062 - -2.1 418,062 - +0.6 418,062 - -1.9 418,062 - -1.6 418,068 - +1.2 418,068 - +0.1 418,068 - -0.1 418,070 - -0.2 418,080 - -0.5 418,080 - +2.3 418,080 - +1.5 418,080 - -0.1 418,082 - -1.4 418,082 - -1.6 418,082 - -0.2 418,082 - -0.1 418,082 - +0.2 418,082 - +0.4 418,082 - -0.4 418,087 - -0.0 418,087 - -0.7 418,087 - +0.7 418,087 - -0.7 418,115 - -1.1 418,115 - -1.1 418,115 - -0.6 418,117 - -2.8 418,117 - -1.1 418,117 - -0.1 418,174 - HMPREF1078_RS14615 0.13 -1.1 418,320 - HMPREF1078_RS14615 0.34 -0.1 418,324 - HMPREF1078_RS14615 0.35 -1.4 418,324 - HMPREF1078_RS14615 0.35 -0.6 418,324 - HMPREF1078_RS14615 0.35 -0.6 418,429 - HMPREF1078_RS14615 0.50 -1.1 418,580 - HMPREF1078_RS14615 0.72 -0.1 418,615 - HMPREF1078_RS14615 0.77 -0.6 418,662 - HMPREF1078_RS14615 0.84 +0.9 418,789 - -1.9 418,797 - -1.9 418,797 - -0.9 418,894 + -2.6 418,897 + -0.6 418,927 + -1.4 418,980 + -0.1 419,039 + HMPREF1078_RS14620 0.12 -1.9 419,068 + HMPREF1078_RS14620 0.15 -0.7 419,069 - HMPREF1078_RS14620 0.15 -0.6 419,122 + HMPREF1078_RS14620 0.19 -1.2 419,122 + HMPREF1078_RS14620 0.19 -1.4 419,123 - HMPREF1078_RS14620 0.20 +0.9 419,123 - HMPREF1078_RS14620 0.20 +0.9 419,126 + HMPREF1078_RS14620 0.20 -2.2 419,126 + HMPREF1078_RS14620 0.20 -1.6 419,126 + HMPREF1078_RS14620 0.20 -0.5 419,132 + HMPREF1078_RS14620 0.20 -1.9 419,200 + HMPREF1078_RS14620 0.27 -0.6 419,280 + HMPREF1078_RS14620 0.34 -2.8 419,345 + HMPREF1078_RS14620 0.40 -0.6 419,361 + HMPREF1078_RS14620 0.41 -2.2 419,368 + HMPREF1078_RS14620 0.42 -3.1 419,459 + HMPREF1078_RS14620 0.50 -1.4 419,474 + HMPREF1078_RS14620 0.51 +1.4 419,474 + HMPREF1078_RS14620 0.51 -3.4 419,501 + HMPREF1078_RS14620 0.54 -0.1 419,525 + HMPREF1078_RS14620 0.56 -0.9 419,570 + HMPREF1078_RS14620 0.60 -2.5 419,572 + HMPREF1078_RS14620 0.60 -1.4 419,572 + HMPREF1078_RS14620 0.60 +0.9 419,647 + HMPREF1078_RS14620 0.67 -1.2 419,738 + HMPREF1078_RS14620 0.75 -2.2 419,765 + HMPREF1078_RS14620 0.78 -2.8 419,765 + HMPREF1078_RS14620 0.78 -0.9
Or see this region's nucleotide sequence