Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14550 and HMPREF1078_RS14555 are separated by 7 nucleotides HMPREF1078_RS14555 and HMPREF1078_RS14560 are separated by 6 nucleotides HMPREF1078_RS14560 and HMPREF1078_RS14565 are separated by 99 nucleotides
HMPREF1078_RS14550: HMPREF1078_RS14550 - SDR family oxidoreductase, at 410,161 to 410,889
_RS14550
HMPREF1078_RS14555: HMPREF1078_RS14555 - CDP-alcohol phosphatidyltransferase family protein, at 410,897 to 411,784
_RS14555
HMPREF1078_RS14560: HMPREF1078_RS14560 - lysophospholipid acyltransferase family protein, at 411,791 to 412,618
_RS14560
HMPREF1078_RS14565: HMPREF1078_RS14565 - sigma-54 dependent transcriptional regulator, at 412,718 to 413,905
_RS14565
Position (kb) 411
412
413 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 410.825 kb on + strand at 410.839 kb on + strand at 410.840 kb on - strand at 410.884 kb on - strand at 410.887 kb on + strand at 410.887 kb on + strand at 410.887 kb on + strand at 410.895 kb on - strand at 410.918 kb on + strand at 410.918 kb on + strand at 410.918 kb on + strand at 410.973 kb on - strand at 411.001 kb on + strand, within HMPREF1078_RS14555 at 411.001 kb on + strand, within HMPREF1078_RS14555 at 411.002 kb on - strand, within HMPREF1078_RS14555 at 411.019 kb on + strand, within HMPREF1078_RS14555 at 411.022 kb on + strand, within HMPREF1078_RS14555 at 411.022 kb on + strand, within HMPREF1078_RS14555 at 411.022 kb on + strand, within HMPREF1078_RS14555 at 411.023 kb on - strand, within HMPREF1078_RS14555 at 411.023 kb on - strand, within HMPREF1078_RS14555 at 411.031 kb on + strand, within HMPREF1078_RS14555 at 411.031 kb on + strand, within HMPREF1078_RS14555 at 411.032 kb on - strand, within HMPREF1078_RS14555 at 411.032 kb on - strand, within HMPREF1078_RS14555 at 411.032 kb on - strand, within HMPREF1078_RS14555 at 411.130 kb on - strand, within HMPREF1078_RS14555 at 411.202 kb on + strand, within HMPREF1078_RS14555 at 411.202 kb on + strand, within HMPREF1078_RS14555 at 411.235 kb on + strand, within HMPREF1078_RS14555 at 411.236 kb on - strand, within HMPREF1078_RS14555 at 411.236 kb on - strand, within HMPREF1078_RS14555 at 411.241 kb on + strand, within HMPREF1078_RS14555 at 411.333 kb on + strand, within HMPREF1078_RS14555 at 411.353 kb on + strand, within HMPREF1078_RS14555 at 411.356 kb on + strand, within HMPREF1078_RS14555 at 411.374 kb on + strand, within HMPREF1078_RS14555 at 411.374 kb on + strand, within HMPREF1078_RS14555 at 411.375 kb on - strand, within HMPREF1078_RS14555 at 411.423 kb on + strand, within HMPREF1078_RS14555 at 411.423 kb on + strand, within HMPREF1078_RS14555 at 411.423 kb on + strand, within HMPREF1078_RS14555 at 411.424 kb on - strand, within HMPREF1078_RS14555 at 411.449 kb on + strand, within HMPREF1078_RS14555 at 411.455 kb on - strand, within HMPREF1078_RS14555 at 411.460 kb on + strand, within HMPREF1078_RS14555 at 411.490 kb on + strand, within HMPREF1078_RS14555 at 411.490 kb on + strand, within HMPREF1078_RS14555 at 411.491 kb on - strand, within HMPREF1078_RS14555 at 411.491 kb on - strand, within HMPREF1078_RS14555 at 411.565 kb on + strand, within HMPREF1078_RS14555 at 411.578 kb on - strand, within HMPREF1078_RS14555 at 411.641 kb on - strand, within HMPREF1078_RS14555 at 411.649 kb on + strand, within HMPREF1078_RS14555 at 411.704 kb on + strand at 411.705 kb on - strand at 411.705 kb on - strand at 411.712 kb on - strand at 411.717 kb on + strand at 411.717 kb on + strand at 411.778 kb on + strand at 411.807 kb on + strand at 411.813 kb on + strand at 411.813 kb on + strand at 411.823 kb on - strand at 411.985 kb on + strand, within HMPREF1078_RS14560 at 412.064 kb on - strand, within HMPREF1078_RS14560 at 412.099 kb on - strand, within HMPREF1078_RS14560 at 412.227 kb on + strand, within HMPREF1078_RS14560 at 412.227 kb on + strand, within HMPREF1078_RS14560 at 412.313 kb on - strand, within HMPREF1078_RS14560 at 412.391 kb on + strand, within HMPREF1078_RS14560 at 412.391 kb on + strand, within HMPREF1078_RS14560 at 412.392 kb on - strand, within HMPREF1078_RS14560 at 412.473 kb on + strand, within HMPREF1078_RS14560 at 412.598 kb on - strand at 412.598 kb on - strand at 412.601 kb on + strand at 412.601 kb on + strand at 412.610 kb on - strand at 412.629 kb on + strand at 412.684 kb on + strand at 412.684 kb on + strand at 412.695 kb on + strand at 412.705 kb on + strand at 412.708 kb on + strand at 412.717 kb on + strand at 412.762 kb on + strand at 412.768 kb on + strand at 412.884 kb on + strand, within HMPREF1078_RS14565 at 412.916 kb on + strand, within HMPREF1078_RS14565 at 412.920 kb on + strand, within HMPREF1078_RS14565
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 410,825 + -0.3 410,839 + -0.5 410,840 - -2.9 410,884 - -2.1 410,887 + +1.1 410,887 + -0.6 410,887 + -1.6 410,895 - -1.4 410,918 + -2.2 410,918 + -2.4 410,918 + -1.4 410,973 - +0.9 411,001 + HMPREF1078_RS14555 0.12 -2.1 411,001 + HMPREF1078_RS14555 0.12 -1.9 411,002 - HMPREF1078_RS14555 0.12 -1.1 411,019 + HMPREF1078_RS14555 0.14 -2.8 411,022 + HMPREF1078_RS14555 0.14 -2.1 411,022 + HMPREF1078_RS14555 0.14 -1.6 411,022 + HMPREF1078_RS14555 0.14 -1.1 411,023 - HMPREF1078_RS14555 0.14 -1.1 411,023 - HMPREF1078_RS14555 0.14 -0.1 411,031 + HMPREF1078_RS14555 0.15 -0.1 411,031 + HMPREF1078_RS14555 0.15 -2.4 411,032 - HMPREF1078_RS14555 0.15 -0.6 411,032 - HMPREF1078_RS14555 0.15 -1.6 411,032 - HMPREF1078_RS14555 0.15 -0.6 411,130 - HMPREF1078_RS14555 0.26 -1.4 411,202 + HMPREF1078_RS14555 0.34 -2.1 411,202 + HMPREF1078_RS14555 0.34 -0.1 411,235 + HMPREF1078_RS14555 0.38 -2.1 411,236 - HMPREF1078_RS14555 0.38 -1.6 411,236 - HMPREF1078_RS14555 0.38 -0.6 411,241 + HMPREF1078_RS14555 0.39 +0.9 411,333 + HMPREF1078_RS14555 0.49 -0.6 411,353 + HMPREF1078_RS14555 0.51 -2.1 411,356 + HMPREF1078_RS14555 0.52 -2.8 411,374 + HMPREF1078_RS14555 0.54 -1.1 411,374 + HMPREF1078_RS14555 0.54 -1.6 411,375 - HMPREF1078_RS14555 0.54 -2.1 411,423 + HMPREF1078_RS14555 0.59 -1.1 411,423 + HMPREF1078_RS14555 0.59 +1.5 411,423 + HMPREF1078_RS14555 0.59 -1.4 411,424 - HMPREF1078_RS14555 0.59 -1.9 411,449 + HMPREF1078_RS14555 0.62 -0.1 411,455 - HMPREF1078_RS14555 0.63 -0.1 411,460 + HMPREF1078_RS14555 0.63 -2.5 411,490 + HMPREF1078_RS14555 0.67 -0.1 411,490 + HMPREF1078_RS14555 0.67 -2.5 411,491 - HMPREF1078_RS14555 0.67 -0.6 411,491 - HMPREF1078_RS14555 0.67 -1.1 411,565 + HMPREF1078_RS14555 0.75 -0.1 411,578 - HMPREF1078_RS14555 0.77 -0.1 411,641 - HMPREF1078_RS14555 0.84 +0.9 411,649 + HMPREF1078_RS14555 0.85 -0.1 411,704 + -2.0 411,705 - -1.6 411,705 - -2.1 411,712 - -0.6 411,717 + -2.9 411,717 + -1.9 411,778 + -1.1 411,807 + -0.6 411,813 + -1.4 411,813 + -0.1 411,823 - -1.1 411,985 + HMPREF1078_RS14560 0.23 -0.1 412,064 - HMPREF1078_RS14560 0.33 +0.9 412,099 - HMPREF1078_RS14560 0.37 -0.6 412,227 + HMPREF1078_RS14560 0.53 -0.1 412,227 + HMPREF1078_RS14560 0.53 -0.1 412,313 - HMPREF1078_RS14560 0.63 -0.1 412,391 + HMPREF1078_RS14560 0.72 -0.6 412,391 + HMPREF1078_RS14560 0.72 -2.1 412,392 - HMPREF1078_RS14560 0.73 -1.6 412,473 + HMPREF1078_RS14560 0.82 -1.1 412,598 - -3.8 412,598 - -2.9 412,601 + -1.1 412,601 + -5.2 412,610 - -2.1 412,629 + +0.2 412,684 + +0.8 412,684 + -0.5 412,695 + -0.6 412,705 + +0.4 412,708 + -1.1 412,717 + -1.1 412,762 + +0.9 412,768 + -0.6 412,884 + HMPREF1078_RS14565 0.14 +0.9 412,916 + HMPREF1078_RS14565 0.17 -0.6 412,920 + HMPREF1078_RS14565 0.17 -1.9
Or see this region's nucleotide sequence