Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14525

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14520 and HMPREF1078_RS14525 are separated by 97 nucleotidesHMPREF1078_RS14525 and HMPREF1078_RS14530 are separated by 111 nucleotides HMPREF1078_RS14520: HMPREF1078_RS14520 - hemolysin family protein, at 402,469 to 403,725 _RS14520 HMPREF1078_RS14525: HMPREF1078_RS14525 - SurA N-terminal domain-containing protein, at 403,823 to 405,961 _RS14525 HMPREF1078_RS14530: HMPREF1078_RS14530 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 406,073 to 407,104 _RS14530 Position (kb) 403 404 405 406Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 402.843 kb on + strand, within HMPREF1078_RS14520at 402.843 kb on + strand, within HMPREF1078_RS14520at 402.843 kb on + strand, within HMPREF1078_RS14520at 402.844 kb on - strand, within HMPREF1078_RS14520at 402.844 kb on - strand, within HMPREF1078_RS14520at 402.867 kb on - strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.872 kb on + strand, within HMPREF1078_RS14520at 402.873 kb on - strand, within HMPREF1078_RS14520at 402.873 kb on - strand, within HMPREF1078_RS14520at 402.874 kb on + strand, within HMPREF1078_RS14520at 402.874 kb on + strand, within HMPREF1078_RS14520at 402.874 kb on + strand, within HMPREF1078_RS14520at 402.874 kb on + strand, within HMPREF1078_RS14520at 402.874 kb on + strand, within HMPREF1078_RS14520at 402.875 kb on - strand, within HMPREF1078_RS14520at 402.875 kb on - strand, within HMPREF1078_RS14520at 402.875 kb on - strand, within HMPREF1078_RS14520at 402.875 kb on - strand, within HMPREF1078_RS14520at 402.944 kb on + strand, within HMPREF1078_RS14520at 402.997 kb on + strand, within HMPREF1078_RS14520at 402.997 kb on + strand, within HMPREF1078_RS14520at 403.055 kb on + strand, within HMPREF1078_RS14520at 403.163 kb on + strand, within HMPREF1078_RS14520at 403.164 kb on - strand, within HMPREF1078_RS14520at 403.207 kb on + strand, within HMPREF1078_RS14520at 403.208 kb on - strand, within HMPREF1078_RS14520at 403.209 kb on + strand, within HMPREF1078_RS14520at 403.218 kb on + strand, within HMPREF1078_RS14520at 403.227 kb on + strand, within HMPREF1078_RS14520at 403.227 kb on + strand, within HMPREF1078_RS14520at 403.227 kb on + strand, within HMPREF1078_RS14520at 403.228 kb on - strand, within HMPREF1078_RS14520at 403.228 kb on - strand, within HMPREF1078_RS14520at 403.237 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.239 kb on + strand, within HMPREF1078_RS14520at 403.288 kb on - strand, within HMPREF1078_RS14520at 403.329 kb on + strand, within HMPREF1078_RS14520at 403.365 kb on + strand, within HMPREF1078_RS14520at 403.366 kb on - strand, within HMPREF1078_RS14520at 403.436 kb on + strand, within HMPREF1078_RS14520at 403.474 kb on + strand, within HMPREF1078_RS14520at 403.474 kb on + strand, within HMPREF1078_RS14520at 403.475 kb on - strand, within HMPREF1078_RS14520at 403.475 kb on - strand, within HMPREF1078_RS14520at 403.504 kb on + strand, within HMPREF1078_RS14520at 403.504 kb on + strand, within HMPREF1078_RS14520at 403.505 kb on - strand, within HMPREF1078_RS14520at 403.505 kb on - strand, within HMPREF1078_RS14520at 403.508 kb on + strand, within HMPREF1078_RS14520at 403.509 kb on - strand, within HMPREF1078_RS14520at 403.509 kb on - strand, within HMPREF1078_RS14520at 403.522 kb on - strand, within HMPREF1078_RS14520at 403.579 kb on + strand, within HMPREF1078_RS14520at 403.589 kb on + strand, within HMPREF1078_RS14520at 403.590 kb on - strand, within HMPREF1078_RS14520at 403.599 kb on + strand, within HMPREF1078_RS14520at 403.599 kb on + strand, within HMPREF1078_RS14520at 403.601 kb on + strandat 403.601 kb on + strandat 403.687 kb on - strandat 403.700 kb on + strandat 403.701 kb on - strandat 403.724 kb on - strandat 403.820 kb on + strandat 403.931 kb on + strandat 403.979 kb on - strandat 404.027 kb on + strandat 404.027 kb on + strandat 404.091 kb on + strand, within HMPREF1078_RS14525at 404.101 kb on + strand, within HMPREF1078_RS14525at 404.309 kb on + strand, within HMPREF1078_RS14525at 404.401 kb on + strand, within HMPREF1078_RS14525at 404.402 kb on + strand, within HMPREF1078_RS14525at 404.404 kb on + strand, within HMPREF1078_RS14525at 404.420 kb on - strand, within HMPREF1078_RS14525at 404.492 kb on + strand, within HMPREF1078_RS14525at 404.515 kb on + strand, within HMPREF1078_RS14525at 404.530 kb on + strand, within HMPREF1078_RS14525at 404.538 kb on + strand, within HMPREF1078_RS14525at 404.539 kb on - strand, within HMPREF1078_RS14525at 404.615 kb on + strand, within HMPREF1078_RS14525at 404.615 kb on + strand, within HMPREF1078_RS14525at 404.615 kb on + strand, within HMPREF1078_RS14525at 404.616 kb on - strand, within HMPREF1078_RS14525at 404.616 kb on - strand, within HMPREF1078_RS14525at 404.698 kb on + strand, within HMPREF1078_RS14525at 404.699 kb on - strand, within HMPREF1078_RS14525at 404.699 kb on - strand, within HMPREF1078_RS14525at 404.742 kb on + strand, within HMPREF1078_RS14525at 404.749 kb on + strand, within HMPREF1078_RS14525at 404.827 kb on - strand, within HMPREF1078_RS14525at 404.878 kb on + strand, within HMPREF1078_RS14525at 404.915 kb on - strand, within HMPREF1078_RS14525at 404.979 kb on + strand, within HMPREF1078_RS14525at 405.140 kb on + strand, within HMPREF1078_RS14525at 405.172 kb on + strand, within HMPREF1078_RS14525at 405.196 kb on + strand, within HMPREF1078_RS14525at 405.197 kb on - strand, within HMPREF1078_RS14525at 405.212 kb on + strand, within HMPREF1078_RS14525at 405.219 kb on + strand, within HMPREF1078_RS14525at 405.220 kb on - strand, within HMPREF1078_RS14525at 405.226 kb on + strand, within HMPREF1078_RS14525at 405.230 kb on + strand, within HMPREF1078_RS14525at 405.232 kb on + strand, within HMPREF1078_RS14525at 405.232 kb on + strand, within HMPREF1078_RS14525at 405.233 kb on - strand, within HMPREF1078_RS14525at 405.260 kb on + strand, within HMPREF1078_RS14525at 405.265 kb on + strand, within HMPREF1078_RS14525at 405.265 kb on + strand, within HMPREF1078_RS14525at 405.265 kb on + strand, within HMPREF1078_RS14525at 405.272 kb on + strand, within HMPREF1078_RS14525at 405.272 kb on + strand, within HMPREF1078_RS14525at 405.272 kb on + strand, within HMPREF1078_RS14525at 405.312 kb on + strand, within HMPREF1078_RS14525at 405.313 kb on - strand, within HMPREF1078_RS14525at 405.613 kb on + strand, within HMPREF1078_RS14525at 405.638 kb on + strand, within HMPREF1078_RS14525at 405.638 kb on + strand, within HMPREF1078_RS14525at 405.795 kb on + strandat 405.795 kb on + strandat 405.796 kb on - strandat 405.797 kb on + strandat 405.797 kb on + strandat 405.797 kb on + strandat 405.797 kb on + strandat 405.797 kb on + strandat 405.797 kb on + strandat 405.797 kb on + strandat 405.797 kb on + strandat 405.798 kb on - strandat 405.798 kb on - strandat 405.798 kb on - strandat 405.798 kb on - strandat 405.798 kb on - strandat 405.811 kb on - strandat 405.811 kb on - strandat 405.812 kb on + strandat 405.840 kb on - strandat 405.957 kb on - strandat 406.000 kb on + strandat 406.001 kb on - strandat 406.002 kb on + strandat 406.003 kb on - strandat 406.159 kb on + strandat 406.220 kb on - strand, within HMPREF1078_RS14530at 406.221 kb on + strand, within HMPREF1078_RS14530at 406.222 kb on - strand, within HMPREF1078_RS14530at 406.222 kb on - strand, within HMPREF1078_RS14530at 406.222 kb on - strand, within HMPREF1078_RS14530at 406.273 kb on - strand, within HMPREF1078_RS14530at 406.316 kb on + strand, within HMPREF1078_RS14530at 406.316 kb on + strand, within HMPREF1078_RS14530at 406.317 kb on - strand, within HMPREF1078_RS14530at 406.322 kb on + strand, within HMPREF1078_RS14530at 406.433 kb on - strand, within HMPREF1078_RS14530at 406.453 kb on + strand, within HMPREF1078_RS14530at 406.453 kb on + strand, within HMPREF1078_RS14530at 406.522 kb on + strand, within HMPREF1078_RS14530at 406.523 kb on - strand, within HMPREF1078_RS14530at 406.605 kb on - strand, within HMPREF1078_RS14530at 406.605 kb on - strand, within HMPREF1078_RS14530at 406.645 kb on + strand, within HMPREF1078_RS14530at 406.665 kb on + strand, within HMPREF1078_RS14530at 406.777 kb on + strand, within HMPREF1078_RS14530at 406.808 kb on - strand, within HMPREF1078_RS14530at 406.835 kb on + strand, within HMPREF1078_RS14530at 406.836 kb on - strand, within HMPREF1078_RS14530at 406.836 kb on - strand, within HMPREF1078_RS14530at 406.897 kb on - strand, within HMPREF1078_RS14530at 406.901 kb on - strand, within HMPREF1078_RS14530

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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402,843 + HMPREF1078_RS14520 0.30 +0.6
402,843 + HMPREF1078_RS14520 0.30 +0.5
402,843 + HMPREF1078_RS14520 0.30 -1.4
402,844 - HMPREF1078_RS14520 0.30 +0.7
402,844 - HMPREF1078_RS14520 0.30 -0.1
402,867 - HMPREF1078_RS14520 0.32 +2.4
402,872 + HMPREF1078_RS14520 0.32 -0.6
402,872 + HMPREF1078_RS14520 0.32 +1.0
402,872 + HMPREF1078_RS14520 0.32 +0.1
402,872 + HMPREF1078_RS14520 0.32 -1.1
402,872 + HMPREF1078_RS14520 0.32 +0.9
402,872 + HMPREF1078_RS14520 0.32 -1.6
402,872 + HMPREF1078_RS14520 0.32 +0.9
402,872 + HMPREF1078_RS14520 0.32 +0.3
402,873 - HMPREF1078_RS14520 0.32 -1.9
402,873 - HMPREF1078_RS14520 0.32 +1.2
402,874 + HMPREF1078_RS14520 0.32 -3.1
402,874 + HMPREF1078_RS14520 0.32 -0.7
402,874 + HMPREF1078_RS14520 0.32 -0.4
402,874 + HMPREF1078_RS14520 0.32 -0.1
402,874 + HMPREF1078_RS14520 0.32 +0.3
402,875 - HMPREF1078_RS14520 0.32 -0.6
402,875 - HMPREF1078_RS14520 0.32 +0.5
402,875 - HMPREF1078_RS14520 0.32 -1.9
402,875 - HMPREF1078_RS14520 0.32 +0.7
402,944 + HMPREF1078_RS14520 0.38 +1.1
402,997 + HMPREF1078_RS14520 0.42 +0.5
402,997 + HMPREF1078_RS14520 0.42 -1.6
403,055 + HMPREF1078_RS14520 0.47 -0.1
403,163 + HMPREF1078_RS14520 0.55 +0.6
403,164 - HMPREF1078_RS14520 0.55 +1.9
403,207 + HMPREF1078_RS14520 0.59 -0.5
403,208 - HMPREF1078_RS14520 0.59 -0.4
403,209 + HMPREF1078_RS14520 0.59 +1.8
403,218 + HMPREF1078_RS14520 0.60 -0.1
403,227 + HMPREF1078_RS14520 0.60 -0.3
403,227 + HMPREF1078_RS14520 0.60 +0.5
403,227 + HMPREF1078_RS14520 0.60 -0.7
403,228 - HMPREF1078_RS14520 0.60 -2.8
403,228 - HMPREF1078_RS14520 0.60 -2.4
403,237 + HMPREF1078_RS14520 0.61 -2.1
403,239 + HMPREF1078_RS14520 0.61 -0.2
403,239 + HMPREF1078_RS14520 0.61 +0.8
403,239 + HMPREF1078_RS14520 0.61 +0.7
403,239 + HMPREF1078_RS14520 0.61 -0.6
403,239 + HMPREF1078_RS14520 0.61 +0.6
403,239 + HMPREF1078_RS14520 0.61 -0.2
403,239 + HMPREF1078_RS14520 0.61 -0.1
403,239 + HMPREF1078_RS14520 0.61 -0.9
403,288 - HMPREF1078_RS14520 0.65 -0.6
403,329 + HMPREF1078_RS14520 0.68 +0.3
403,365 + HMPREF1078_RS14520 0.71 -1.6
403,366 - HMPREF1078_RS14520 0.71 -2.4
403,436 + HMPREF1078_RS14520 0.77 -0.6
403,474 + HMPREF1078_RS14520 0.80 -2.4
403,474 + HMPREF1078_RS14520 0.80 -0.1
403,475 - HMPREF1078_RS14520 0.80 -0.3
403,475 - HMPREF1078_RS14520 0.80 +3.7
403,504 + HMPREF1078_RS14520 0.82 -0.2
403,504 + HMPREF1078_RS14520 0.82 -0.2
403,505 - HMPREF1078_RS14520 0.82 -0.4
403,505 - HMPREF1078_RS14520 0.82 -1.8
403,508 + HMPREF1078_RS14520 0.83 +1.2
403,509 - HMPREF1078_RS14520 0.83 -1.9
403,509 - HMPREF1078_RS14520 0.83 -1.3
403,522 - HMPREF1078_RS14520 0.84 -0.1
403,579 + HMPREF1078_RS14520 0.88 -0.1
403,589 + HMPREF1078_RS14520 0.89 -0.1
403,590 - HMPREF1078_RS14520 0.89 -1.1
403,599 + HMPREF1078_RS14520 0.90 -2.4
403,599 + HMPREF1078_RS14520 0.90 -0.3
403,601 + -2.5
403,601 + -1.6
403,687 - +0.9
403,700 + -3.8
403,701 - -1.6
403,724 - -1.2
403,820 + -1.4
403,931 + -0.6
403,979 - -0.6
404,027 + +0.9
404,027 + -0.6
404,091 + HMPREF1078_RS14525 0.13 -0.1
404,101 + HMPREF1078_RS14525 0.13 -0.1
404,309 + HMPREF1078_RS14525 0.23 -0.6
404,401 + HMPREF1078_RS14525 0.27 -0.6
404,402 + HMPREF1078_RS14525 0.27 +0.9
404,404 + HMPREF1078_RS14525 0.27 -1.4
404,420 - HMPREF1078_RS14525 0.28 -0.1
404,492 + HMPREF1078_RS14525 0.31 -1.4
404,515 + HMPREF1078_RS14525 0.32 -1.4
404,530 + HMPREF1078_RS14525 0.33 +0.9
404,538 + HMPREF1078_RS14525 0.33 -1.4
404,539 - HMPREF1078_RS14525 0.33 -1.1
404,615 + HMPREF1078_RS14525 0.37 +0.9
404,615 + HMPREF1078_RS14525 0.37 -0.6
404,615 + HMPREF1078_RS14525 0.37 -1.1
404,616 - HMPREF1078_RS14525 0.37 +0.9
404,616 - HMPREF1078_RS14525 0.37 +0.9
404,698 + HMPREF1078_RS14525 0.41 -0.6
404,699 - HMPREF1078_RS14525 0.41 +0.9
404,699 - HMPREF1078_RS14525 0.41 -0.1
404,742 + HMPREF1078_RS14525 0.43 -1.1
404,749 + HMPREF1078_RS14525 0.43 -2.2
404,827 - HMPREF1078_RS14525 0.47 -0.1
404,878 + HMPREF1078_RS14525 0.49 -1.6
404,915 - HMPREF1078_RS14525 0.51 -0.6
404,979 + HMPREF1078_RS14525 0.54 +0.9
405,140 + HMPREF1078_RS14525 0.62 +0.9
405,172 + HMPREF1078_RS14525 0.63 -0.6
405,196 + HMPREF1078_RS14525 0.64 -1.9
405,197 - HMPREF1078_RS14525 0.64 -1.9
405,212 + HMPREF1078_RS14525 0.65 -1.1
405,219 + HMPREF1078_RS14525 0.65 -2.5
405,220 - HMPREF1078_RS14525 0.65 -0.1
405,226 + HMPREF1078_RS14525 0.66 -0.1
405,230 + HMPREF1078_RS14525 0.66 -0.1
405,232 + HMPREF1078_RS14525 0.66 -0.6
405,232 + HMPREF1078_RS14525 0.66 +0.9
405,233 - HMPREF1078_RS14525 0.66 -2.1
405,260 + HMPREF1078_RS14525 0.67 -0.6
405,265 + HMPREF1078_RS14525 0.67 +0.9
405,265 + HMPREF1078_RS14525 0.67 -0.6
405,265 + HMPREF1078_RS14525 0.67 -1.1
405,272 + HMPREF1078_RS14525 0.68 -0.1
405,272 + HMPREF1078_RS14525 0.68 -3.5
405,272 + HMPREF1078_RS14525 0.68 -1.1
405,312 + HMPREF1078_RS14525 0.70 -1.4
405,313 - HMPREF1078_RS14525 0.70 -0.1
405,613 + HMPREF1078_RS14525 0.84 -0.1
405,638 + HMPREF1078_RS14525 0.85 +0.9
405,638 + HMPREF1078_RS14525 0.85 -0.6
405,795 + -0.1
405,795 + -0.6
405,796 - -1.1
405,797 + -1.1
405,797 + -0.1
405,797 + +0.9
405,797 + +0.9
405,797 + -1.9
405,797 + +0.9
405,797 + -2.1
405,797 + -0.6
405,798 - -1.1
405,798 - -1.4
405,798 - -1.6
405,798 - +0.9
405,798 - +0.9
405,811 - +0.9
405,811 - +0.9
405,812 + -1.4
405,840 - +0.9
405,957 - -3.0
406,000 + -0.4
406,001 - -2.4
406,002 + -3.3
406,003 - -1.0
406,159 + +1.4
406,220 - HMPREF1078_RS14530 0.14 -0.6
406,221 + HMPREF1078_RS14530 0.14 +0.1
406,222 - HMPREF1078_RS14530 0.14 -2.9
406,222 - HMPREF1078_RS14530 0.14 +2.3
406,222 - HMPREF1078_RS14530 0.14 -0.1
406,273 - HMPREF1078_RS14530 0.19 +1.7
406,316 + HMPREF1078_RS14530 0.24 -1.2
406,316 + HMPREF1078_RS14530 0.24 -1.6
406,317 - HMPREF1078_RS14530 0.24 -1.6
406,322 + HMPREF1078_RS14530 0.24 +0.9
406,433 - HMPREF1078_RS14530 0.35 -0.6
406,453 + HMPREF1078_RS14530 0.37 -0.5
406,453 + HMPREF1078_RS14530 0.37 +0.4
406,522 + HMPREF1078_RS14530 0.44 +2.2
406,523 - HMPREF1078_RS14530 0.44 +0.9
406,605 - HMPREF1078_RS14530 0.52 +0.5
406,605 - HMPREF1078_RS14530 0.52 +0.9
406,645 + HMPREF1078_RS14530 0.55 +0.5
406,665 + HMPREF1078_RS14530 0.57 -1.1
406,777 + HMPREF1078_RS14530 0.68 -0.6
406,808 - HMPREF1078_RS14530 0.71 -2.0
406,835 + HMPREF1078_RS14530 0.74 -0.5
406,836 - HMPREF1078_RS14530 0.74 -2.2
406,836 - HMPREF1078_RS14530 0.74 +0.2
406,897 - HMPREF1078_RS14530 0.80 -2.4
406,901 - HMPREF1078_RS14530 0.80 -1.8

Or see this region's nucleotide sequence