Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14085

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14075 and HMPREF1078_RS14080 are separated by 127 nucleotidesHMPREF1078_RS14080 and HMPREF1078_RS14085 are separated by 10 nucleotidesHMPREF1078_RS14085 and HMPREF1078_RS14090 are separated by 4 nucleotidesHMPREF1078_RS14090 and HMPREF1078_RS14095 are separated by 93 nucleotides HMPREF1078_RS14075: HMPREF1078_RS14075 - glycosyltransferase, at 277,879 to 279,537 _RS14075 HMPREF1078_RS14080: HMPREF1078_RS14080 - hypothetical protein, at 279,665 to 279,949 _RS14080 HMPREF1078_RS14085: HMPREF1078_RS14085 - lysophospholipid acyltransferase family protein, at 279,960 to 280,505 _RS14085 HMPREF1078_RS14090: HMPREF1078_RS14090 - amidohydrolase, at 280,510 to 281,292 _RS14090 HMPREF1078_RS14095: HMPREF1078_RS14095 - molecular chaperone DnaK, at 281,386 to 283,302 _RS14095 Position (kb) 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 279.024 kb on - strand, within HMPREF1078_RS14075at 279.117 kb on + strand, within HMPREF1078_RS14075at 279.117 kb on + strand, within HMPREF1078_RS14075at 279.117 kb on + strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.118 kb on - strand, within HMPREF1078_RS14075at 279.122 kb on - strand, within HMPREF1078_RS14075at 279.138 kb on + strand, within HMPREF1078_RS14075at 279.138 kb on + strand, within HMPREF1078_RS14075at 279.161 kb on + strand, within HMPREF1078_RS14075at 279.162 kb on - strand, within HMPREF1078_RS14075at 279.247 kb on + strand, within HMPREF1078_RS14075at 279.318 kb on + strand, within HMPREF1078_RS14075at 279.400 kb on - strandat 279.411 kb on + strandat 279.418 kb on - strandat 279.435 kb on + strandat 279.461 kb on + strandat 279.462 kb on - strandat 279.466 kb on - strandat 279.477 kb on + strandat 279.480 kb on + strandat 279.484 kb on + strandat 279.484 kb on + strandat 279.485 kb on - strandat 279.485 kb on - strandat 279.510 kb on - strandat 279.528 kb on + strandat 279.528 kb on + strandat 279.551 kb on + strandat 279.630 kb on + strandat 279.646 kb on + strandat 279.664 kb on + strandat 279.665 kb on - strandat 279.739 kb on + strand, within HMPREF1078_RS14080at 279.747 kb on - strand, within HMPREF1078_RS14080at 279.795 kb on + strand, within HMPREF1078_RS14080at 279.796 kb on - strand, within HMPREF1078_RS14080at 279.802 kb on + strand, within HMPREF1078_RS14080at 279.872 kb on + strand, within HMPREF1078_RS14080at 279.876 kb on - strand, within HMPREF1078_RS14080at 279.910 kb on - strand, within HMPREF1078_RS14080at 279.919 kb on - strand, within HMPREF1078_RS14080at 279.955 kb on - strandat 279.973 kb on + strandat 279.977 kb on + strandat 279.977 kb on + strandat 279.978 kb on - strandat 280.045 kb on + strand, within HMPREF1078_RS14085at 280.046 kb on - strand, within HMPREF1078_RS14085at 280.046 kb on - strand, within HMPREF1078_RS14085at 280.046 kb on - strand, within HMPREF1078_RS14085at 280.098 kb on + strand, within HMPREF1078_RS14085at 280.098 kb on + strand, within HMPREF1078_RS14085at 280.098 kb on + strand, within HMPREF1078_RS14085at 280.365 kb on + strand, within HMPREF1078_RS14085at 280.374 kb on + strand, within HMPREF1078_RS14085at 280.405 kb on + strand, within HMPREF1078_RS14085at 280.415 kb on + strand, within HMPREF1078_RS14085at 280.437 kb on - strand, within HMPREF1078_RS14085at 280.507 kb on - strandat 280.533 kb on + strandat 280.533 kb on + strandat 280.548 kb on + strandat 280.625 kb on + strand, within HMPREF1078_RS14090at 280.625 kb on + strand, within HMPREF1078_RS14090at 280.626 kb on - strand, within HMPREF1078_RS14090at 280.626 kb on - strand, within HMPREF1078_RS14090at 280.647 kb on + strand, within HMPREF1078_RS14090at 280.663 kb on - strand, within HMPREF1078_RS14090at 280.702 kb on - strand, within HMPREF1078_RS14090at 280.702 kb on - strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.704 kb on + strand, within HMPREF1078_RS14090at 280.705 kb on - strand, within HMPREF1078_RS14090at 280.705 kb on - strand, within HMPREF1078_RS14090at 280.711 kb on - strand, within HMPREF1078_RS14090at 280.713 kb on + strand, within HMPREF1078_RS14090at 280.713 kb on + strand, within HMPREF1078_RS14090at 280.713 kb on + strand, within HMPREF1078_RS14090at 280.714 kb on - strand, within HMPREF1078_RS14090at 280.714 kb on - strand, within HMPREF1078_RS14090at 280.715 kb on + strand, within HMPREF1078_RS14090at 280.716 kb on - strand, within HMPREF1078_RS14090at 280.735 kb on + strand, within HMPREF1078_RS14090at 280.735 kb on + strand, within HMPREF1078_RS14090at 280.737 kb on + strand, within HMPREF1078_RS14090at 280.737 kb on + strand, within HMPREF1078_RS14090at 280.738 kb on - strand, within HMPREF1078_RS14090at 280.826 kb on - strand, within HMPREF1078_RS14090at 280.826 kb on - strand, within HMPREF1078_RS14090at 280.826 kb on - strand, within HMPREF1078_RS14090at 280.831 kb on + strand, within HMPREF1078_RS14090at 280.904 kb on + strand, within HMPREF1078_RS14090at 280.909 kb on + strand, within HMPREF1078_RS14090at 280.910 kb on - strand, within HMPREF1078_RS14090at 280.910 kb on - strand, within HMPREF1078_RS14090at 280.911 kb on + strand, within HMPREF1078_RS14090at 280.911 kb on + strand, within HMPREF1078_RS14090at 280.911 kb on + strand, within HMPREF1078_RS14090at 280.912 kb on - strand, within HMPREF1078_RS14090at 280.912 kb on - strand, within HMPREF1078_RS14090at 280.924 kb on - strand, within HMPREF1078_RS14090at 280.943 kb on - strand, within HMPREF1078_RS14090at 280.987 kb on + strand, within HMPREF1078_RS14090at 280.987 kb on + strand, within HMPREF1078_RS14090at 280.987 kb on + strand, within HMPREF1078_RS14090at 280.987 kb on + strand, within HMPREF1078_RS14090at 280.988 kb on - strand, within HMPREF1078_RS14090at 280.988 kb on - strand, within HMPREF1078_RS14090at 281.002 kb on + strand, within HMPREF1078_RS14090at 281.002 kb on + strand, within HMPREF1078_RS14090at 281.003 kb on - strand, within HMPREF1078_RS14090at 281.003 kb on - strand, within HMPREF1078_RS14090at 281.036 kb on + strand, within HMPREF1078_RS14090at 281.075 kb on - strand, within HMPREF1078_RS14090at 281.080 kb on + strand, within HMPREF1078_RS14090at 281.211 kb on + strand, within HMPREF1078_RS14090at 281.211 kb on + strand, within HMPREF1078_RS14090at 281.211 kb on + strand, within HMPREF1078_RS14090at 281.211 kb on + strand, within HMPREF1078_RS14090at 281.212 kb on - strand, within HMPREF1078_RS14090at 281.212 kb on - strand, within HMPREF1078_RS14090at 281.212 kb on - strand, within HMPREF1078_RS14090at 281.240 kb on + strandat 281.241 kb on - strandat 281.382 kb on - strandat 281.387 kb on + strandat 281.388 kb on - strandat 281.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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279,024 - HMPREF1078_RS14075 0.69 +0.2
279,117 + HMPREF1078_RS14075 0.75 -2.1
279,117 + HMPREF1078_RS14075 0.75 +0.8
279,117 + HMPREF1078_RS14075 0.75 +2.3
279,118 - HMPREF1078_RS14075 0.75 -1.8
279,118 - HMPREF1078_RS14075 0.75 +0.5
279,118 - HMPREF1078_RS14075 0.75 +0.3
279,118 - HMPREF1078_RS14075 0.75 -0.9
279,118 - HMPREF1078_RS14075 0.75 +0.6
279,122 - HMPREF1078_RS14075 0.75 -0.0
279,138 + HMPREF1078_RS14075 0.76 -1.4
279,138 + HMPREF1078_RS14075 0.76 -1.0
279,161 + HMPREF1078_RS14075 0.77 -1.4
279,162 - HMPREF1078_RS14075 0.77 +0.1
279,247 + HMPREF1078_RS14075 0.82 -0.6
279,318 + HMPREF1078_RS14075 0.87 -1.8
279,400 - +0.9
279,411 + +0.1
279,418 - -0.8
279,435 + +0.6
279,461 + +1.3
279,462 - +0.8
279,466 - -2.1
279,477 + -2.4
279,480 + +0.4
279,484 + +1.9
279,484 + -2.2
279,485 - -0.4
279,485 - +0.9
279,510 - +0.9
279,528 + -2.5
279,528 + -0.6
279,551 + +1.4
279,630 + -0.9
279,646 + +0.2
279,664 + +2.1
279,665 - -2.8
279,739 + HMPREF1078_RS14080 0.26 +1.1
279,747 - HMPREF1078_RS14080 0.29 -1.4
279,795 + HMPREF1078_RS14080 0.46 -0.2
279,796 - HMPREF1078_RS14080 0.46 -3.2
279,802 + HMPREF1078_RS14080 0.48 -0.2
279,872 + HMPREF1078_RS14080 0.73 -0.6
279,876 - HMPREF1078_RS14080 0.74 -1.6
279,910 - HMPREF1078_RS14080 0.86 -2.6
279,919 - HMPREF1078_RS14080 0.89 -2.7
279,955 - -2.2
279,973 + -1.1
279,977 + -2.5
279,977 + -1.6
279,978 - -0.6
280,045 + HMPREF1078_RS14085 0.16 -2.5
280,046 - HMPREF1078_RS14085 0.16 -2.4
280,046 - HMPREF1078_RS14085 0.16 -0.1
280,046 - HMPREF1078_RS14085 0.16 -3.1
280,098 + HMPREF1078_RS14085 0.25 -1.6
280,098 + HMPREF1078_RS14085 0.25 -1.6
280,098 + HMPREF1078_RS14085 0.25 -2.5
280,365 + HMPREF1078_RS14085 0.74 -2.8
280,374 + HMPREF1078_RS14085 0.76 -0.6
280,405 + HMPREF1078_RS14085 0.82 -1.9
280,415 + HMPREF1078_RS14085 0.83 -2.4
280,437 - HMPREF1078_RS14085 0.87 -3.2
280,507 - -0.1
280,533 + +0.8
280,533 + -1.8
280,548 + +0.8
280,625 + HMPREF1078_RS14090 0.15 +0.9
280,625 + HMPREF1078_RS14090 0.15 +1.6
280,626 - HMPREF1078_RS14090 0.15 -0.3
280,626 - HMPREF1078_RS14090 0.15 +0.4
280,647 + HMPREF1078_RS14090 0.17 +2.0
280,663 - HMPREF1078_RS14090 0.20 -0.6
280,702 - HMPREF1078_RS14090 0.25 +0.1
280,702 - HMPREF1078_RS14090 0.25 -1.4
280,704 + HMPREF1078_RS14090 0.25 +1.5
280,704 + HMPREF1078_RS14090 0.25 +0.6
280,704 + HMPREF1078_RS14090 0.25 +0.3
280,704 + HMPREF1078_RS14090 0.25 +0.3
280,704 + HMPREF1078_RS14090 0.25 +0.2
280,705 - HMPREF1078_RS14090 0.25 +0.9
280,705 - HMPREF1078_RS14090 0.25 -1.1
280,711 - HMPREF1078_RS14090 0.26 +1.5
280,713 + HMPREF1078_RS14090 0.26 -0.0
280,713 + HMPREF1078_RS14090 0.26 +0.3
280,713 + HMPREF1078_RS14090 0.26 +0.9
280,714 - HMPREF1078_RS14090 0.26 +1.5
280,714 - HMPREF1078_RS14090 0.26 -0.6
280,715 + HMPREF1078_RS14090 0.26 -1.2
280,716 - HMPREF1078_RS14090 0.26 -0.1
280,735 + HMPREF1078_RS14090 0.29 +0.2
280,735 + HMPREF1078_RS14090 0.29 -0.6
280,737 + HMPREF1078_RS14090 0.29 -1.6
280,737 + HMPREF1078_RS14090 0.29 +0.2
280,738 - HMPREF1078_RS14090 0.29 +0.3
280,826 - HMPREF1078_RS14090 0.40 +0.3
280,826 - HMPREF1078_RS14090 0.40 +0.6
280,826 - HMPREF1078_RS14090 0.40 -1.6
280,831 + HMPREF1078_RS14090 0.41 -0.1
280,904 + HMPREF1078_RS14090 0.50 +0.5
280,909 + HMPREF1078_RS14090 0.51 -0.3
280,910 - HMPREF1078_RS14090 0.51 -0.7
280,910 - HMPREF1078_RS14090 0.51 -2.5
280,911 + HMPREF1078_RS14090 0.51 -2.0
280,911 + HMPREF1078_RS14090 0.51 -1.9
280,911 + HMPREF1078_RS14090 0.51 -0.1
280,912 - HMPREF1078_RS14090 0.51 +0.0
280,912 - HMPREF1078_RS14090 0.51 -0.4
280,924 - HMPREF1078_RS14090 0.53 -0.6
280,943 - HMPREF1078_RS14090 0.55 +0.7
280,987 + HMPREF1078_RS14090 0.61 +0.9
280,987 + HMPREF1078_RS14090 0.61 +0.8
280,987 + HMPREF1078_RS14090 0.61 -0.6
280,987 + HMPREF1078_RS14090 0.61 +0.9
280,988 - HMPREF1078_RS14090 0.61 -0.1
280,988 - HMPREF1078_RS14090 0.61 +1.4
281,002 + HMPREF1078_RS14090 0.63 +0.5
281,002 + HMPREF1078_RS14090 0.63 +0.1
281,003 - HMPREF1078_RS14090 0.63 +0.8
281,003 - HMPREF1078_RS14090 0.63 +0.8
281,036 + HMPREF1078_RS14090 0.67 -0.4
281,075 - HMPREF1078_RS14090 0.72 +0.9
281,080 + HMPREF1078_RS14090 0.73 -2.1
281,211 + HMPREF1078_RS14090 0.90 -2.0
281,211 + HMPREF1078_RS14090 0.90 +0.1
281,211 + HMPREF1078_RS14090 0.90 +0.8
281,211 + HMPREF1078_RS14090 0.90 -0.6
281,212 - HMPREF1078_RS14090 0.90 -2.8
281,212 - HMPREF1078_RS14090 0.90 +0.8
281,212 - HMPREF1078_RS14090 0.90 -0.6
281,240 + +0.4
281,241 - -2.6
281,382 - +1.9
281,387 + -0.1
281,388 - +0.6
281,417 - -1.0

Or see this region's nucleotide sequence