Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13930

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS13920 and HMPREF1078_RS13925 are separated by 8 nucleotidesHMPREF1078_RS13925 and HMPREF1078_RS13930 are separated by 79 nucleotidesHMPREF1078_RS13930 and HMPREF1078_RS13935 are separated by 3 nucleotidesHMPREF1078_RS13935 and HMPREF1078_RS13940 are separated by 131 nucleotides HMPREF1078_RS13920: HMPREF1078_RS13920 - tRNA 2-thiocytidine biosynthesis TtcA family protein, at 242,257 to 243,012 _RS13920 HMPREF1078_RS13925: HMPREF1078_RS13925 - DMT family protein, at 243,021 to 243,392 _RS13925 HMPREF1078_RS13930: HMPREF1078_RS13930 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 243,472 to 244,380 _RS13930 HMPREF1078_RS13935: HMPREF1078_RS13935 - hypothetical protein, at 244,384 to 244,944 _RS13935 HMPREF1078_RS13940: HMPREF1078_RS13940 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 245,076 to 245,861 _RS13940 Position (kb) 243 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 242.476 kb on - strand, within HMPREF1078_RS13920at 242.482 kb on + strand, within HMPREF1078_RS13920at 242.686 kb on - strand, within HMPREF1078_RS13920at 242.686 kb on - strand, within HMPREF1078_RS13920at 242.761 kb on - strand, within HMPREF1078_RS13920at 242.903 kb on + strand, within HMPREF1078_RS13920at 242.944 kb on - strandat 242.958 kb on + strandat 242.958 kb on + strandat 242.959 kb on - strandat 242.959 kb on - strandat 242.981 kb on - strandat 242.994 kb on + strandat 243.003 kb on + strandat 243.004 kb on - strandat 243.010 kb on + strandat 243.038 kb on + strandat 243.039 kb on - strandat 243.046 kb on + strandat 243.063 kb on - strand, within HMPREF1078_RS13925at 243.068 kb on + strand, within HMPREF1078_RS13925at 243.069 kb on - strand, within HMPREF1078_RS13925at 243.272 kb on + strand, within HMPREF1078_RS13925at 243.326 kb on + strand, within HMPREF1078_RS13925at 243.391 kb on - strandat 243.402 kb on - strandat 243.430 kb on + strandat 243.500 kb on - strandat 243.503 kb on + strandat 243.512 kb on - strandat 243.628 kb on + strand, within HMPREF1078_RS13930at 243.650 kb on + strand, within HMPREF1078_RS13930at 243.651 kb on - strand, within HMPREF1078_RS13930at 243.754 kb on + strand, within HMPREF1078_RS13930at 243.806 kb on - strand, within HMPREF1078_RS13930at 243.816 kb on + strand, within HMPREF1078_RS13930at 243.817 kb on - strand, within HMPREF1078_RS13930at 243.846 kb on + strand, within HMPREF1078_RS13930at 243.911 kb on + strand, within HMPREF1078_RS13930at 243.933 kb on + strand, within HMPREF1078_RS13930at 243.933 kb on + strand, within HMPREF1078_RS13930at 243.934 kb on - strand, within HMPREF1078_RS13930at 243.940 kb on + strand, within HMPREF1078_RS13930at 243.941 kb on - strand, within HMPREF1078_RS13930at 243.941 kb on - strand, within HMPREF1078_RS13930at 243.942 kb on + strand, within HMPREF1078_RS13930at 243.942 kb on + strand, within HMPREF1078_RS13930at 243.942 kb on + strand, within HMPREF1078_RS13930at 244.042 kb on - strand, within HMPREF1078_RS13930at 244.073 kb on + strand, within HMPREF1078_RS13930at 244.073 kb on + strand, within HMPREF1078_RS13930at 244.073 kb on + strand, within HMPREF1078_RS13930at 244.074 kb on - strand, within HMPREF1078_RS13930at 244.074 kb on - strand, within HMPREF1078_RS13930at 244.074 kb on - strand, within HMPREF1078_RS13930at 244.074 kb on - strand, within HMPREF1078_RS13930at 244.074 kb on - strand, within HMPREF1078_RS13930at 244.074 kb on - strand, within HMPREF1078_RS13930at 244.074 kb on - strand, within HMPREF1078_RS13930at 244.170 kb on - strand, within HMPREF1078_RS13930at 244.173 kb on - strand, within HMPREF1078_RS13930at 244.200 kb on + strand, within HMPREF1078_RS13930at 244.201 kb on - strand, within HMPREF1078_RS13930at 244.201 kb on - strand, within HMPREF1078_RS13930at 244.201 kb on - strand, within HMPREF1078_RS13930at 244.202 kb on + strand, within HMPREF1078_RS13930at 244.202 kb on + strand, within HMPREF1078_RS13930at 244.202 kb on + strand, within HMPREF1078_RS13930at 244.203 kb on - strand, within HMPREF1078_RS13930at 244.203 kb on - strand, within HMPREF1078_RS13930at 244.203 kb on - strand, within HMPREF1078_RS13930at 244.211 kb on - strand, within HMPREF1078_RS13930at 244.234 kb on - strand, within HMPREF1078_RS13930at 244.316 kb on - strandat 244.363 kb on + strandat 244.364 kb on - strandat 244.381 kb on + strandat 244.382 kb on - strandat 244.382 kb on - strandat 244.382 kb on - strandat 244.404 kb on - strandat 244.449 kb on + strand, within HMPREF1078_RS13935at 244.469 kb on + strand, within HMPREF1078_RS13935at 244.469 kb on + strand, within HMPREF1078_RS13935at 244.484 kb on + strand, within HMPREF1078_RS13935at 244.499 kb on - strand, within HMPREF1078_RS13935at 244.510 kb on - strand, within HMPREF1078_RS13935at 244.650 kb on - strand, within HMPREF1078_RS13935at 244.650 kb on - strand, within HMPREF1078_RS13935at 244.707 kb on + strand, within HMPREF1078_RS13935at 244.707 kb on + strand, within HMPREF1078_RS13935at 244.708 kb on - strand, within HMPREF1078_RS13935at 244.708 kb on - strand, within HMPREF1078_RS13935at 244.708 kb on - strand, within HMPREF1078_RS13935at 244.708 kb on - strand, within HMPREF1078_RS13935at 244.718 kb on - strand, within HMPREF1078_RS13935at 244.719 kb on + strand, within HMPREF1078_RS13935at 244.719 kb on + strand, within HMPREF1078_RS13935at 244.719 kb on + strand, within HMPREF1078_RS13935at 244.719 kb on + strand, within HMPREF1078_RS13935at 244.720 kb on - strand, within HMPREF1078_RS13935at 244.720 kb on - strand, within HMPREF1078_RS13935at 244.721 kb on + strand, within HMPREF1078_RS13935at 244.722 kb on - strand, within HMPREF1078_RS13935at 244.722 kb on - strand, within HMPREF1078_RS13935at 244.722 kb on - strand, within HMPREF1078_RS13935at 244.722 kb on - strand, within HMPREF1078_RS13935at 244.722 kb on - strand, within HMPREF1078_RS13935at 244.722 kb on - strand, within HMPREF1078_RS13935at 244.743 kb on + strand, within HMPREF1078_RS13935at 244.771 kb on - strand, within HMPREF1078_RS13935at 244.771 kb on - strand, within HMPREF1078_RS13935at 244.824 kb on + strand, within HMPREF1078_RS13935at 244.824 kb on + strand, within HMPREF1078_RS13935at 244.854 kb on - strand, within HMPREF1078_RS13935at 244.927 kb on + strandat 244.940 kb on - strandat 244.940 kb on - strandat 244.940 kb on - strandat 244.940 kb on - strandat 244.944 kb on + strandat 244.951 kb on + strandat 244.951 kb on + strandat 244.954 kb on + strandat 245.004 kb on + strandat 245.005 kb on - strandat 245.005 kb on - strandat 245.015 kb on + strandat 245.016 kb on - strandat 245.017 kb on + strandat 245.018 kb on - strandat 245.018 kb on - strandat 245.018 kb on - strandat 245.074 kb on + strandat 245.074 kb on + strandat 245.074 kb on + strandat 245.074 kb on + strandat 245.077 kb on + strandat 245.078 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
remove
242,476 - HMPREF1078_RS13920 0.29 -0.1
242,482 + HMPREF1078_RS13920 0.30 -1.2
242,686 - HMPREF1078_RS13920 0.57 -2.3
242,686 - HMPREF1078_RS13920 0.57 -0.2
242,761 - HMPREF1078_RS13920 0.67 +2.0
242,903 + HMPREF1078_RS13920 0.85 +1.0
242,944 - +0.9
242,958 + -0.4
242,958 + -0.4
242,959 - +1.7
242,959 - -1.1
242,981 - +1.5
242,994 + +0.2
243,003 + -0.4
243,004 - +1.0
243,010 + +0.0
243,038 + +0.9
243,039 - -1.4
243,046 + -0.6
243,063 - HMPREF1078_RS13925 0.11 +0.3
243,068 + HMPREF1078_RS13925 0.13 +0.5
243,069 - HMPREF1078_RS13925 0.13 -0.2
243,272 + HMPREF1078_RS13925 0.67 -1.2
243,326 + HMPREF1078_RS13925 0.82 +0.6
243,391 - +2.8
243,402 - +0.4
243,430 + -0.6
243,500 - -1.5
243,503 + +0.2
243,512 - -1.4
243,628 + HMPREF1078_RS13930 0.17 -1.6
243,650 + HMPREF1078_RS13930 0.20 +0.9
243,651 - HMPREF1078_RS13930 0.20 -1.2
243,754 + HMPREF1078_RS13930 0.31 -1.4
243,806 - HMPREF1078_RS13930 0.37 -1.6
243,816 + HMPREF1078_RS13930 0.38 -0.1
243,817 - HMPREF1078_RS13930 0.38 -0.6
243,846 + HMPREF1078_RS13930 0.41 -2.5
243,911 + HMPREF1078_RS13930 0.48 +0.9
243,933 + HMPREF1078_RS13930 0.51 -2.5
243,933 + HMPREF1078_RS13930 0.51 -1.6
243,934 - HMPREF1078_RS13930 0.51 -2.1
243,940 + HMPREF1078_RS13930 0.51 -1.1
243,941 - HMPREF1078_RS13930 0.52 -2.6
243,941 - HMPREF1078_RS13930 0.52 +2.5
243,942 + HMPREF1078_RS13930 0.52 -2.5
243,942 + HMPREF1078_RS13930 0.52 -1.6
243,942 + HMPREF1078_RS13930 0.52 +0.9
244,042 - HMPREF1078_RS13930 0.63 -1.4
244,073 + HMPREF1078_RS13930 0.66 -1.6
244,073 + HMPREF1078_RS13930 0.66 -1.1
244,073 + HMPREF1078_RS13930 0.66 -1.1
244,074 - HMPREF1078_RS13930 0.66 -0.1
244,074 - HMPREF1078_RS13930 0.66 +0.9
244,074 - HMPREF1078_RS13930 0.66 -1.2
244,074 - HMPREF1078_RS13930 0.66 +0.9
244,074 - HMPREF1078_RS13930 0.66 -0.1
244,074 - HMPREF1078_RS13930 0.66 -0.6
244,074 - HMPREF1078_RS13930 0.66 -0.6
244,170 - HMPREF1078_RS13930 0.77 -3.0
244,173 - HMPREF1078_RS13930 0.77 -0.6
244,200 + HMPREF1078_RS13930 0.80 -2.1
244,201 - HMPREF1078_RS13930 0.80 -1.6
244,201 - HMPREF1078_RS13930 0.80 -1.1
244,201 - HMPREF1078_RS13930 0.80 -0.1
244,202 + HMPREF1078_RS13930 0.80 -0.6
244,202 + HMPREF1078_RS13930 0.80 -1.4
244,202 + HMPREF1078_RS13930 0.80 -1.4
244,203 - HMPREF1078_RS13930 0.80 -1.6
244,203 - HMPREF1078_RS13930 0.80 -1.4
244,203 - HMPREF1078_RS13930 0.80 -1.1
244,211 - HMPREF1078_RS13930 0.81 -0.6
244,234 - HMPREF1078_RS13930 0.84 -0.6
244,316 - -3.1
244,363 + -1.4
244,364 - -1.0
244,381 + -1.4
244,382 - -0.6
244,382 - +0.7
244,382 - +0.5
244,404 - -2.1
244,449 + HMPREF1078_RS13935 0.12 -2.4
244,469 + HMPREF1078_RS13935 0.15 -2.2
244,469 + HMPREF1078_RS13935 0.15 -1.4
244,484 + HMPREF1078_RS13935 0.18 +0.9
244,499 - HMPREF1078_RS13935 0.20 -0.3
244,510 - HMPREF1078_RS13935 0.22 -0.8
244,650 - HMPREF1078_RS13935 0.47 -1.5
244,650 - HMPREF1078_RS13935 0.47 -2.2
244,707 + HMPREF1078_RS13935 0.58 -0.1
244,707 + HMPREF1078_RS13935 0.58 -0.1
244,708 - HMPREF1078_RS13935 0.58 -0.2
244,708 - HMPREF1078_RS13935 0.58 -2.5
244,708 - HMPREF1078_RS13935 0.58 -2.9
244,708 - HMPREF1078_RS13935 0.58 -0.4
244,718 - HMPREF1078_RS13935 0.60 -0.9
244,719 + HMPREF1078_RS13935 0.60 -0.6
244,719 + HMPREF1078_RS13935 0.60 -0.6
244,719 + HMPREF1078_RS13935 0.60 -0.6
244,719 + HMPREF1078_RS13935 0.60 +0.9
244,720 - HMPREF1078_RS13935 0.60 -2.1
244,720 - HMPREF1078_RS13935 0.60 -1.0
244,721 + HMPREF1078_RS13935 0.60 -1.1
244,722 - HMPREF1078_RS13935 0.60 -2.2
244,722 - HMPREF1078_RS13935 0.60 -2.2
244,722 - HMPREF1078_RS13935 0.60 -0.3
244,722 - HMPREF1078_RS13935 0.60 -1.1
244,722 - HMPREF1078_RS13935 0.60 +1.9
244,722 - HMPREF1078_RS13935 0.60 -1.5
244,743 + HMPREF1078_RS13935 0.64 -0.6
244,771 - HMPREF1078_RS13935 0.69 -0.1
244,771 - HMPREF1078_RS13935 0.69 -1.1
244,824 + HMPREF1078_RS13935 0.78 -1.4
244,824 + HMPREF1078_RS13935 0.78 -0.1
244,854 - HMPREF1078_RS13935 0.84 -0.5
244,927 + -0.1
244,940 - -2.8
244,940 - -0.9
244,940 - +2.1
244,940 - -2.2
244,944 + -1.9
244,951 + -0.1
244,951 + -1.6
244,954 + -1.1
245,004 + -0.2
245,005 - -1.5
245,005 - +0.5
245,015 + -0.8
245,016 - +1.6
245,017 + +0.5
245,018 - -3.0
245,018 - -0.1
245,018 - -1.4
245,074 + -3.3
245,074 + +0.9
245,074 + -0.3
245,074 + +1.0
245,077 + -0.2
245,078 - -1.5

Or see this region's nucleotide sequence