Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13905 and HMPREF1078_RS13910 are separated by 38 nucleotides HMPREF1078_RS13910 and HMPREF1078_RS13915 are separated by 11 nucleotides HMPREF1078_RS13915 and HMPREF1078_RS13920 are separated by 150 nucleotides HMPREF1078_RS13920 and HMPREF1078_RS13925 are separated by 8 nucleotides
HMPREF1078_RS13905: HMPREF1078_RS13905 - flotillin-like protein FloA, at 239,154 to 240,146
_RS13905
HMPREF1078_RS13910: HMPREF1078_RS13910 - NfeD family protein, at 240,185 to 240,655
_RS13910
HMPREF1078_RS13915: HMPREF1078_RS13915 - tetratricopeptide repeat protein, at 240,667 to 242,106
_RS13915
HMPREF1078_RS13920: HMPREF1078_RS13920 - tRNA 2-thiocytidine biosynthesis TtcA family protein, at 242,257 to 243,012
_RS13920
HMPREF1078_RS13925: HMPREF1078_RS13925 - DMT family protein, at 243,021 to 243,392
_RS13925
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 239.902 kb on + strand, within HMPREF1078_RS13905 at 239.902 kb on + strand, within HMPREF1078_RS13905 at 239.902 kb on + strand, within HMPREF1078_RS13905 at 240.019 kb on - strand, within HMPREF1078_RS13905 at 240.019 kb on - strand, within HMPREF1078_RS13905 at 240.076 kb on + strand at 240.077 kb on - strand at 240.080 kb on - strand at 240.090 kb on + strand at 240.091 kb on - strand at 240.129 kb on + strand at 240.207 kb on - strand at 240.207 kb on - strand at 240.213 kb on + strand at 240.214 kb on - strand at 240.228 kb on - strand at 240.228 kb on - strand at 240.228 kb on - strand at 240.230 kb on + strand at 240.281 kb on + strand, within HMPREF1078_RS13910 at 240.282 kb on - strand, within HMPREF1078_RS13910 at 240.513 kb on + strand, within HMPREF1078_RS13910 at 240.513 kb on + strand, within HMPREF1078_RS13910 at 240.519 kb on + strand, within HMPREF1078_RS13910 at 240.519 kb on + strand, within HMPREF1078_RS13910 at 240.519 kb on + strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.520 kb on - strand, within HMPREF1078_RS13910 at 240.614 kb on + strand at 240.623 kb on + strand at 240.624 kb on - strand at 240.634 kb on + strand at 240.638 kb on - strand at 240.638 kb on - strand at 240.655 kb on + strand at 240.655 kb on + strand at 240.655 kb on + strand at 240.656 kb on - strand at 240.656 kb on - strand at 240.668 kb on + strand at 240.816 kb on - strand, within HMPREF1078_RS13915 at 240.933 kb on - strand, within HMPREF1078_RS13915 at 240.933 kb on - strand, within HMPREF1078_RS13915 at 240.939 kb on + strand, within HMPREF1078_RS13915 at 240.939 kb on + strand, within HMPREF1078_RS13915 at 240.939 kb on + strand, within HMPREF1078_RS13915 at 240.940 kb on - strand, within HMPREF1078_RS13915 at 240.943 kb on - strand, within HMPREF1078_RS13915 at 240.943 kb on - strand, within HMPREF1078_RS13915 at 240.945 kb on + strand, within HMPREF1078_RS13915 at 240.954 kb on + strand, within HMPREF1078_RS13915 at 240.989 kb on + strand, within HMPREF1078_RS13915 at 240.994 kb on + strand, within HMPREF1078_RS13915 at 240.995 kb on - strand, within HMPREF1078_RS13915 at 241.093 kb on + strand, within HMPREF1078_RS13915 at 241.094 kb on - strand, within HMPREF1078_RS13915 at 241.180 kb on + strand, within HMPREF1078_RS13915 at 241.221 kb on + strand, within HMPREF1078_RS13915 at 241.222 kb on - strand, within HMPREF1078_RS13915 at 241.224 kb on - strand, within HMPREF1078_RS13915 at 241.274 kb on + strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.275 kb on - strand, within HMPREF1078_RS13915 at 241.296 kb on - strand, within HMPREF1078_RS13915 at 241.317 kb on - strand, within HMPREF1078_RS13915 at 241.352 kb on + strand, within HMPREF1078_RS13915 at 241.352 kb on + strand, within HMPREF1078_RS13915 at 241.386 kb on - strand, within HMPREF1078_RS13915 at 241.420 kb on + strand, within HMPREF1078_RS13915 at 241.420 kb on + strand, within HMPREF1078_RS13915 at 241.420 kb on + strand, within HMPREF1078_RS13915 at 241.421 kb on - strand, within HMPREF1078_RS13915 at 241.450 kb on - strand, within HMPREF1078_RS13915 at 241.503 kb on - strand, within HMPREF1078_RS13915 at 241.505 kb on + strand, within HMPREF1078_RS13915 at 241.506 kb on - strand, within HMPREF1078_RS13915 at 241.577 kb on + strand, within HMPREF1078_RS13915 at 241.577 kb on + strand, within HMPREF1078_RS13915 at 241.606 kb on + strand, within HMPREF1078_RS13915 at 241.611 kb on + strand, within HMPREF1078_RS13915 at 241.613 kb on + strand, within HMPREF1078_RS13915 at 241.613 kb on + strand, within HMPREF1078_RS13915 at 241.614 kb on - strand, within HMPREF1078_RS13915 at 241.614 kb on - strand, within HMPREF1078_RS13915 at 241.651 kb on - strand, within HMPREF1078_RS13915 at 241.654 kb on + strand, within HMPREF1078_RS13915 at 241.654 kb on + strand, within HMPREF1078_RS13915 at 241.655 kb on - strand, within HMPREF1078_RS13915 at 241.655 kb on - strand, within HMPREF1078_RS13915 at 241.764 kb on + strand, within HMPREF1078_RS13915 at 241.765 kb on - strand, within HMPREF1078_RS13915 at 241.765 kb on - strand, within HMPREF1078_RS13915 at 241.765 kb on - strand, within HMPREF1078_RS13915 at 241.767 kb on - strand, within HMPREF1078_RS13915 at 241.767 kb on - strand, within HMPREF1078_RS13915 at 241.802 kb on + strand, within HMPREF1078_RS13915 at 241.802 kb on + strand, within HMPREF1078_RS13915 at 241.806 kb on - strand, within HMPREF1078_RS13915 at 241.814 kb on + strand, within HMPREF1078_RS13915 at 241.815 kb on - strand, within HMPREF1078_RS13915 at 241.815 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.828 kb on - strand, within HMPREF1078_RS13915 at 241.830 kb on - strand, within HMPREF1078_RS13915 at 241.835 kb on + strand, within HMPREF1078_RS13915 at 241.847 kb on - strand, within HMPREF1078_RS13915 at 241.864 kb on + strand, within HMPREF1078_RS13915 at 241.864 kb on + strand, within HMPREF1078_RS13915 at 241.864 kb on + strand, within HMPREF1078_RS13915 at 241.865 kb on - strand, within HMPREF1078_RS13915 at 241.923 kb on - strand, within HMPREF1078_RS13915 at 241.933 kb on - strand, within HMPREF1078_RS13915 at 241.935 kb on - strand, within HMPREF1078_RS13915 at 241.998 kb on + strand at 241.998 kb on + strand at 241.999 kb on - strand at 242.091 kb on + strand at 242.091 kb on + strand at 242.091 kb on + strand at 242.113 kb on - strand at 242.120 kb on - strand at 242.120 kb on - strand at 242.140 kb on - strand at 242.155 kb on - strand at 242.249 kb on - strand at 242.251 kb on + strand at 242.251 kb on + strand at 242.297 kb on + strand at 242.330 kb on - strand at 242.355 kb on + strand, within HMPREF1078_RS13920 at 242.355 kb on + strand, within HMPREF1078_RS13920 at 242.355 kb on + strand, within HMPREF1078_RS13920 at 242.356 kb on - strand, within HMPREF1078_RS13920 at 242.426 kb on + strand, within HMPREF1078_RS13920 at 242.427 kb on - strand, within HMPREF1078_RS13920 at 242.427 kb on - strand, within HMPREF1078_RS13920 at 242.461 kb on - strand, within HMPREF1078_RS13920 at 242.476 kb on - strand, within HMPREF1078_RS13920 at 242.482 kb on + strand, within HMPREF1078_RS13920 at 242.686 kb on - strand, within HMPREF1078_RS13920 at 242.686 kb on - strand, within HMPREF1078_RS13920 at 242.761 kb on - strand, within HMPREF1078_RS13920 at 242.903 kb on + strand, within HMPREF1078_RS13920 at 242.944 kb on - strand at 242.958 kb on + strand at 242.958 kb on + strand at 242.959 kb on - strand at 242.959 kb on - strand at 242.981 kb on - strand at 242.994 kb on + strand at 243.003 kb on + strand at 243.004 kb on - strand at 243.010 kb on + strand at 243.038 kb on + strand at 243.039 kb on - strand at 243.046 kb on + strand at 243.063 kb on - strand, within HMPREF1078_RS13925 at 243.068 kb on + strand, within HMPREF1078_RS13925 at 243.069 kb on - strand, within HMPREF1078_RS13925
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 239,902 + HMPREF1078_RS13905 0.75 -1.6 239,902 + HMPREF1078_RS13905 0.75 -0.1 239,902 + HMPREF1078_RS13905 0.75 -0.1 240,019 - HMPREF1078_RS13905 0.87 +1.5 240,019 - HMPREF1078_RS13905 0.87 -0.9 240,076 + -1.1 240,077 - +1.4 240,080 - -0.7 240,090 + -1.7 240,091 - -3.3 240,129 + +1.2 240,207 - -1.4 240,207 - -0.4 240,213 + +0.7 240,214 - -1.0 240,228 - -0.9 240,228 - +0.2 240,228 - -2.5 240,230 + -1.1 240,281 + HMPREF1078_RS13910 0.20 -1.1 240,282 - HMPREF1078_RS13910 0.21 -3.8 240,513 + HMPREF1078_RS13910 0.70 +3.5 240,513 + HMPREF1078_RS13910 0.70 -0.2 240,519 + HMPREF1078_RS13910 0.71 +0.4 240,519 + HMPREF1078_RS13910 0.71 -0.2 240,519 + HMPREF1078_RS13910 0.71 +0.9 240,520 - HMPREF1078_RS13910 0.71 -1.7 240,520 - HMPREF1078_RS13910 0.71 -0.7 240,520 - HMPREF1078_RS13910 0.71 -0.9 240,520 - HMPREF1078_RS13910 0.71 -0.7 240,614 + +0.0 240,623 + +0.9 240,624 - -0.1 240,634 + -0.7 240,638 - +0.6 240,638 - -0.6 240,655 + -1.9 240,655 + +0.6 240,655 + +1.5 240,656 - -2.5 240,656 - +3.6 240,668 + +0.9 240,816 - HMPREF1078_RS13915 0.10 -0.7 240,933 - HMPREF1078_RS13915 0.18 -2.8 240,933 - HMPREF1078_RS13915 0.18 +0.2 240,939 + HMPREF1078_RS13915 0.19 +0.9 240,939 + HMPREF1078_RS13915 0.19 -1.7 240,939 + HMPREF1078_RS13915 0.19 -1.4 240,940 - HMPREF1078_RS13915 0.19 -2.8 240,943 - HMPREF1078_RS13915 0.19 -2.1 240,943 - HMPREF1078_RS13915 0.19 -1.7 240,945 + HMPREF1078_RS13915 0.19 -1.4 240,954 + HMPREF1078_RS13915 0.20 -2.4 240,989 + HMPREF1078_RS13915 0.22 -0.7 240,994 + HMPREF1078_RS13915 0.23 -1.2 240,995 - HMPREF1078_RS13915 0.23 -1.4 241,093 + HMPREF1078_RS13915 0.30 -1.5 241,094 - HMPREF1078_RS13915 0.30 -2.3 241,180 + HMPREF1078_RS13915 0.36 -3.8 241,221 + HMPREF1078_RS13915 0.38 -2.5 241,222 - HMPREF1078_RS13915 0.39 -1.7 241,224 - HMPREF1078_RS13915 0.39 -0.1 241,274 + HMPREF1078_RS13915 0.42 -3.0 241,275 - HMPREF1078_RS13915 0.42 -2.1 241,275 - HMPREF1078_RS13915 0.42 -2.3 241,275 - HMPREF1078_RS13915 0.42 -2.4 241,275 - HMPREF1078_RS13915 0.42 -1.9 241,296 - HMPREF1078_RS13915 0.44 -1.4 241,317 - HMPREF1078_RS13915 0.45 -2.5 241,352 + HMPREF1078_RS13915 0.48 -2.4 241,352 + HMPREF1078_RS13915 0.48 -1.4 241,386 - HMPREF1078_RS13915 0.50 -2.1 241,420 + HMPREF1078_RS13915 0.52 -0.1 241,420 + HMPREF1078_RS13915 0.52 -1.4 241,420 + HMPREF1078_RS13915 0.52 +0.9 241,421 - HMPREF1078_RS13915 0.52 -0.7 241,450 - HMPREF1078_RS13915 0.54 -0.7 241,503 - HMPREF1078_RS13915 0.58 -2.3 241,505 + HMPREF1078_RS13915 0.58 -1.4 241,506 - HMPREF1078_RS13915 0.58 -2.8 241,577 + HMPREF1078_RS13915 0.63 -0.7 241,577 + HMPREF1078_RS13915 0.63 -1.1 241,606 + HMPREF1078_RS13915 0.65 -2.7 241,611 + HMPREF1078_RS13915 0.66 -2.9 241,613 + HMPREF1078_RS13915 0.66 -2.5 241,613 + HMPREF1078_RS13915 0.66 -1.7 241,614 - HMPREF1078_RS13915 0.66 -0.1 241,614 - HMPREF1078_RS13915 0.66 -2.1 241,651 - HMPREF1078_RS13915 0.68 -1.1 241,654 + HMPREF1078_RS13915 0.69 -1.4 241,654 + HMPREF1078_RS13915 0.69 -1.1 241,655 - HMPREF1078_RS13915 0.69 -3.1 241,655 - HMPREF1078_RS13915 0.69 -0.1 241,764 + HMPREF1078_RS13915 0.76 -1.2 241,765 - HMPREF1078_RS13915 0.76 -2.3 241,765 - HMPREF1078_RS13915 0.76 -3.0 241,765 - HMPREF1078_RS13915 0.76 -1.1 241,767 - HMPREF1078_RS13915 0.76 -2.3 241,767 - HMPREF1078_RS13915 0.76 -0.1 241,802 + HMPREF1078_RS13915 0.79 -0.7 241,802 + HMPREF1078_RS13915 0.79 -2.8 241,806 - HMPREF1078_RS13915 0.79 -4.1 241,814 + HMPREF1078_RS13915 0.80 -0.1 241,815 - HMPREF1078_RS13915 0.80 +0.9 241,815 - HMPREF1078_RS13915 0.80 -3.5 241,828 - HMPREF1078_RS13915 0.81 -2.0 241,828 - HMPREF1078_RS13915 0.81 -2.8 241,828 - HMPREF1078_RS13915 0.81 -1.9 241,828 - HMPREF1078_RS13915 0.81 -1.7 241,830 - HMPREF1078_RS13915 0.81 -3.4 241,835 + HMPREF1078_RS13915 0.81 +0.9 241,847 - HMPREF1078_RS13915 0.82 -0.9 241,864 + HMPREF1078_RS13915 0.83 -3.4 241,864 + HMPREF1078_RS13915 0.83 -3.3 241,864 + HMPREF1078_RS13915 0.83 -2.1 241,865 - HMPREF1078_RS13915 0.83 -2.1 241,923 - HMPREF1078_RS13915 0.87 +1.9 241,933 - HMPREF1078_RS13915 0.88 -2.1 241,935 - HMPREF1078_RS13915 0.88 -2.1 241,998 + -2.7 241,998 + -1.9 241,999 - -3.5 242,091 + -1.7 242,091 + -0.4 242,091 + -2.5 242,113 - -0.6 242,120 - -0.5 242,120 - -0.5 242,140 - -0.4 242,155 - +1.3 242,249 - -1.2 242,251 + -1.5 242,251 + -0.1 242,297 + -1.4 242,330 - -0.9 242,355 + HMPREF1078_RS13920 0.13 -0.8 242,355 + HMPREF1078_RS13920 0.13 -0.2 242,355 + HMPREF1078_RS13920 0.13 -1.2 242,356 - HMPREF1078_RS13920 0.13 -1.9 242,426 + HMPREF1078_RS13920 0.22 -0.4 242,427 - HMPREF1078_RS13920 0.22 +1.1 242,427 - HMPREF1078_RS13920 0.22 -0.4 242,461 - HMPREF1078_RS13920 0.27 +0.5 242,476 - HMPREF1078_RS13920 0.29 -0.1 242,482 + HMPREF1078_RS13920 0.30 -1.2 242,686 - HMPREF1078_RS13920 0.57 -2.3 242,686 - HMPREF1078_RS13920 0.57 -0.2 242,761 - HMPREF1078_RS13920 0.67 +2.0 242,903 + HMPREF1078_RS13920 0.85 +1.0 242,944 - +0.9 242,958 + -0.4 242,958 + -0.4 242,959 - +1.7 242,959 - -1.1 242,981 - +1.5 242,994 + +0.2 243,003 + -0.4 243,004 - +1.0 243,010 + +0.0 243,038 + +0.9 243,039 - -1.4 243,046 + -0.6 243,063 - HMPREF1078_RS13925 0.11 +0.3 243,068 + HMPREF1078_RS13925 0.13 +0.5 243,069 - HMPREF1078_RS13925 0.13 -0.2
Or see this region's nucleotide sequence