Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13640

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13635 and HMPREF1078_RS13640 are separated by 24 nucleotidesHMPREF1078_RS13640 and HMPREF1078_RS13645 are separated by 132 nucleotides HMPREF1078_RS13635: HMPREF1078_RS13635 - mannonate dehydratase, at 175,247 to 176,419 _RS13635 HMPREF1078_RS13640: HMPREF1078_RS13640 - SDR family oxidoreductase, at 176,444 to 177,256 _RS13640 HMPREF1078_RS13645: HMPREF1078_RS13645 - LacI family DNA-binding transcriptional regulator, at 177,389 to 178,444 _RS13645 Position (kb) 176 177 178Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 175.444 kb on - strand, within HMPREF1078_RS13635at 175.451 kb on + strand, within HMPREF1078_RS13635at 175.452 kb on - strand, within HMPREF1078_RS13635at 175.452 kb on - strand, within HMPREF1078_RS13635at 175.507 kb on + strand, within HMPREF1078_RS13635at 175.511 kb on - strand, within HMPREF1078_RS13635at 175.511 kb on - strand, within HMPREF1078_RS13635at 175.511 kb on - strand, within HMPREF1078_RS13635at 175.511 kb on - strand, within HMPREF1078_RS13635at 175.514 kb on + strand, within HMPREF1078_RS13635at 175.515 kb on - strand, within HMPREF1078_RS13635at 175.515 kb on - strand, within HMPREF1078_RS13635at 175.515 kb on - strand, within HMPREF1078_RS13635at 175.515 kb on - strand, within HMPREF1078_RS13635at 175.515 kb on - strand, within HMPREF1078_RS13635at 175.516 kb on + strand, within HMPREF1078_RS13635at 175.685 kb on + strand, within HMPREF1078_RS13635at 175.723 kb on + strand, within HMPREF1078_RS13635at 175.724 kb on - strand, within HMPREF1078_RS13635at 175.733 kb on + strand, within HMPREF1078_RS13635at 175.813 kb on - strand, within HMPREF1078_RS13635at 175.882 kb on + strand, within HMPREF1078_RS13635at 175.890 kb on - strand, within HMPREF1078_RS13635at 175.890 kb on - strand, within HMPREF1078_RS13635at 175.892 kb on + strand, within HMPREF1078_RS13635at 175.892 kb on + strand, within HMPREF1078_RS13635at 175.892 kb on + strand, within HMPREF1078_RS13635at 175.960 kb on + strand, within HMPREF1078_RS13635at 175.960 kb on + strand, within HMPREF1078_RS13635at 175.961 kb on - strand, within HMPREF1078_RS13635at 175.996 kb on - strand, within HMPREF1078_RS13635at 176.034 kb on - strand, within HMPREF1078_RS13635at 176.074 kb on + strand, within HMPREF1078_RS13635at 176.099 kb on - strand, within HMPREF1078_RS13635at 176.099 kb on - strand, within HMPREF1078_RS13635at 176.110 kb on + strand, within HMPREF1078_RS13635at 176.158 kb on - strand, within HMPREF1078_RS13635at 176.170 kb on - strand, within HMPREF1078_RS13635at 176.241 kb on - strand, within HMPREF1078_RS13635at 176.260 kb on + strand, within HMPREF1078_RS13635at 176.261 kb on - strand, within HMPREF1078_RS13635at 176.294 kb on + strand, within HMPREF1078_RS13635at 176.294 kb on + strand, within HMPREF1078_RS13635at 176.295 kb on - strand, within HMPREF1078_RS13635at 176.295 kb on - strand, within HMPREF1078_RS13635at 176.302 kb on - strandat 176.311 kb on + strandat 176.415 kb on + strandat 176.416 kb on - strandat 176.416 kb on - strandat 176.419 kb on + strandat 176.419 kb on + strandat 176.420 kb on - strandat 176.420 kb on - strandat 176.445 kb on + strandat 176.450 kb on - strandat 176.475 kb on - strandat 176.523 kb on + strandat 176.554 kb on + strand, within HMPREF1078_RS13640at 176.575 kb on + strand, within HMPREF1078_RS13640at 176.576 kb on - strand, within HMPREF1078_RS13640at 176.576 kb on - strand, within HMPREF1078_RS13640at 176.635 kb on + strand, within HMPREF1078_RS13640at 176.763 kb on + strand, within HMPREF1078_RS13640at 176.855 kb on + strand, within HMPREF1078_RS13640at 176.855 kb on + strand, within HMPREF1078_RS13640at 176.895 kb on - strand, within HMPREF1078_RS13640at 176.965 kb on + strand, within HMPREF1078_RS13640at 176.998 kb on + strand, within HMPREF1078_RS13640at 176.999 kb on - strand, within HMPREF1078_RS13640at 177.020 kb on - strand, within HMPREF1078_RS13640at 177.020 kb on - strand, within HMPREF1078_RS13640at 177.020 kb on - strand, within HMPREF1078_RS13640at 177.053 kb on + strand, within HMPREF1078_RS13640at 177.053 kb on + strand, within HMPREF1078_RS13640at 177.054 kb on - strand, within HMPREF1078_RS13640at 177.091 kb on + strand, within HMPREF1078_RS13640at 177.108 kb on - strand, within HMPREF1078_RS13640at 177.146 kb on - strand, within HMPREF1078_RS13640at 177.155 kb on - strand, within HMPREF1078_RS13640at 177.184 kb on + strandat 177.185 kb on - strandat 177.214 kb on + strandat 177.218 kb on - strandat 177.257 kb on - strandat 177.269 kb on + strandat 177.292 kb on + strandat 177.292 kb on + strandat 177.293 kb on - strandat 177.296 kb on - strandat 177.394 kb on + strandat 177.396 kb on + strandat 177.397 kb on - strandat 177.404 kb on - strandat 177.404 kb on - strandat 177.406 kb on - strandat 177.408 kb on + strandat 177.408 kb on + strandat 177.445 kb on + strandat 177.448 kb on - strandat 177.468 kb on + strandat 177.501 kb on - strand, within HMPREF1078_RS13645at 177.501 kb on - strand, within HMPREF1078_RS13645at 177.563 kb on + strand, within HMPREF1078_RS13645at 177.589 kb on + strand, within HMPREF1078_RS13645at 177.595 kb on - strand, within HMPREF1078_RS13645at 177.634 kb on - strand, within HMPREF1078_RS13645at 177.644 kb on + strand, within HMPREF1078_RS13645at 177.645 kb on - strand, within HMPREF1078_RS13645at 177.665 kb on + strand, within HMPREF1078_RS13645at 177.666 kb on - strand, within HMPREF1078_RS13645at 177.666 kb on - strand, within HMPREF1078_RS13645at 177.666 kb on - strand, within HMPREF1078_RS13645at 177.707 kb on - strand, within HMPREF1078_RS13645at 177.714 kb on - strand, within HMPREF1078_RS13645at 177.719 kb on + strand, within HMPREF1078_RS13645at 177.720 kb on - strand, within HMPREF1078_RS13645at 177.720 kb on - strand, within HMPREF1078_RS13645at 177.747 kb on - strand, within HMPREF1078_RS13645at 177.747 kb on - strand, within HMPREF1078_RS13645at 177.747 kb on - strand, within HMPREF1078_RS13645at 177.759 kb on + strand, within HMPREF1078_RS13645at 177.759 kb on + strand, within HMPREF1078_RS13645at 177.763 kb on + strand, within HMPREF1078_RS13645at 177.763 kb on + strand, within HMPREF1078_RS13645at 177.763 kb on + strand, within HMPREF1078_RS13645at 177.774 kb on + strand, within HMPREF1078_RS13645at 177.792 kb on + strand, within HMPREF1078_RS13645at 177.830 kb on + strand, within HMPREF1078_RS13645at 177.830 kb on + strand, within HMPREF1078_RS13645at 177.898 kb on - strand, within HMPREF1078_RS13645at 177.898 kb on - strand, within HMPREF1078_RS13645at 177.930 kb on + strand, within HMPREF1078_RS13645at 177.931 kb on - strand, within HMPREF1078_RS13645at 177.937 kb on + strand, within HMPREF1078_RS13645at 177.989 kb on + strand, within HMPREF1078_RS13645at 177.989 kb on + strand, within HMPREF1078_RS13645at 177.989 kb on + strand, within HMPREF1078_RS13645at 177.990 kb on - strand, within HMPREF1078_RS13645at 177.990 kb on - strand, within HMPREF1078_RS13645at 177.990 kb on - strand, within HMPREF1078_RS13645at 177.990 kb on - strand, within HMPREF1078_RS13645at 177.990 kb on - strand, within HMPREF1078_RS13645at 177.990 kb on - strand, within HMPREF1078_RS13645at 177.990 kb on - strand, within HMPREF1078_RS13645at 177.993 kb on + strand, within HMPREF1078_RS13645at 177.993 kb on + strand, within HMPREF1078_RS13645at 177.993 kb on + strand, within HMPREF1078_RS13645at 177.993 kb on + strand, within HMPREF1078_RS13645at 177.993 kb on + strand, within HMPREF1078_RS13645at 177.993 kb on + strand, within HMPREF1078_RS13645at 177.994 kb on - strand, within HMPREF1078_RS13645at 177.994 kb on - strand, within HMPREF1078_RS13645at 177.994 kb on - strand, within HMPREF1078_RS13645at 177.994 kb on - strand, within HMPREF1078_RS13645at 177.994 kb on - strand, within HMPREF1078_RS13645at 177.994 kb on - strand, within HMPREF1078_RS13645at 178.005 kb on - strand, within HMPREF1078_RS13645at 178.005 kb on - strand, within HMPREF1078_RS13645at 178.125 kb on + strand, within HMPREF1078_RS13645at 178.141 kb on + strand, within HMPREF1078_RS13645at 178.142 kb on - strand, within HMPREF1078_RS13645at 178.142 kb on - strand, within HMPREF1078_RS13645at 178.142 kb on - strand, within HMPREF1078_RS13645at 178.142 kb on - strand, within HMPREF1078_RS13645at 178.161 kb on + strand, within HMPREF1078_RS13645at 178.187 kb on - strand, within HMPREF1078_RS13645at 178.229 kb on - strand, within HMPREF1078_RS13645

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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175,444 - HMPREF1078_RS13635 0.17 -3.6
175,451 + HMPREF1078_RS13635 0.17 -3.5
175,452 - HMPREF1078_RS13635 0.17 +0.3
175,452 - HMPREF1078_RS13635 0.17 -1.7
175,507 + HMPREF1078_RS13635 0.22 -2.6
175,511 - HMPREF1078_RS13635 0.23 -2.7
175,511 - HMPREF1078_RS13635 0.23 -3.2
175,511 - HMPREF1078_RS13635 0.23 -1.1
175,511 - HMPREF1078_RS13635 0.23 -2.5
175,514 + HMPREF1078_RS13635 0.23 -2.8
175,515 - HMPREF1078_RS13635 0.23 -3.7
175,515 - HMPREF1078_RS13635 0.23 -2.1
175,515 - HMPREF1078_RS13635 0.23 -0.9
175,515 - HMPREF1078_RS13635 0.23 -2.9
175,515 - HMPREF1078_RS13635 0.23 -3.7
175,516 + HMPREF1078_RS13635 0.23 -1.4
175,685 + HMPREF1078_RS13635 0.37 -2.7
175,723 + HMPREF1078_RS13635 0.41 -2.7
175,724 - HMPREF1078_RS13635 0.41 -2.3
175,733 + HMPREF1078_RS13635 0.41 -0.4
175,813 - HMPREF1078_RS13635 0.48 -1.2
175,882 + HMPREF1078_RS13635 0.54 -3.4
175,890 - HMPREF1078_RS13635 0.55 -2.4
175,890 - HMPREF1078_RS13635 0.55 -1.7
175,892 + HMPREF1078_RS13635 0.55 -2.9
175,892 + HMPREF1078_RS13635 0.55 -0.6
175,892 + HMPREF1078_RS13635 0.55 -2.3
175,960 + HMPREF1078_RS13635 0.61 -1.4
175,960 + HMPREF1078_RS13635 0.61 -2.1
175,961 - HMPREF1078_RS13635 0.61 -1.3
175,996 - HMPREF1078_RS13635 0.64 -1.1
176,034 - HMPREF1078_RS13635 0.67 -2.0
176,074 + HMPREF1078_RS13635 0.71 -3.2
176,099 - HMPREF1078_RS13635 0.73 -2.9
176,099 - HMPREF1078_RS13635 0.73 -1.8
176,110 + HMPREF1078_RS13635 0.74 +1.9
176,158 - HMPREF1078_RS13635 0.78 -2.4
176,170 - HMPREF1078_RS13635 0.79 -2.3
176,241 - HMPREF1078_RS13635 0.85 -2.2
176,260 + HMPREF1078_RS13635 0.86 -1.2
176,261 - HMPREF1078_RS13635 0.86 -2.6
176,294 + HMPREF1078_RS13635 0.89 -2.1
176,294 + HMPREF1078_RS13635 0.89 -3.7
176,295 - HMPREF1078_RS13635 0.89 +0.5
176,295 - HMPREF1078_RS13635 0.89 -1.9
176,302 - +0.9
176,311 + -1.1
176,415 + -2.0
176,416 - -1.1
176,416 - -1.0
176,419 + -2.3
176,419 + -3.0
176,420 - -2.6
176,420 - -2.3
176,445 + -2.6
176,450 - -0.9
176,475 - -2.6
176,523 + +2.5
176,554 + HMPREF1078_RS13640 0.14 -2.1
176,575 + HMPREF1078_RS13640 0.16 -1.3
176,576 - HMPREF1078_RS13640 0.16 -2.3
176,576 - HMPREF1078_RS13640 0.16 -3.3
176,635 + HMPREF1078_RS13640 0.23 -1.7
176,763 + HMPREF1078_RS13640 0.39 -4.4
176,855 + HMPREF1078_RS13640 0.51 -2.3
176,855 + HMPREF1078_RS13640 0.51 -1.7
176,895 - HMPREF1078_RS13640 0.55 -2.5
176,965 + HMPREF1078_RS13640 0.64 -1.8
176,998 + HMPREF1078_RS13640 0.68 -1.1
176,999 - HMPREF1078_RS13640 0.68 -1.9
177,020 - HMPREF1078_RS13640 0.71 -4.7
177,020 - HMPREF1078_RS13640 0.71 -4.6
177,020 - HMPREF1078_RS13640 0.71 -3.5
177,053 + HMPREF1078_RS13640 0.75 -1.7
177,053 + HMPREF1078_RS13640 0.75 -3.3
177,054 - HMPREF1078_RS13640 0.75 -3.0
177,091 + HMPREF1078_RS13640 0.80 -3.6
177,108 - HMPREF1078_RS13640 0.82 -3.6
177,146 - HMPREF1078_RS13640 0.86 -0.3
177,155 - HMPREF1078_RS13640 0.87 -4.0
177,184 + -0.3
177,185 - -3.2
177,214 + -2.2
177,218 - -2.1
177,257 - -0.4
177,269 + -1.1
177,292 + -3.6
177,292 + -3.2
177,293 - +1.1
177,296 - -0.2
177,394 + -2.6
177,396 + -3.3
177,397 - -1.8
177,404 - -1.3
177,404 - -3.1
177,406 - -0.6
177,408 + -1.4
177,408 + -3.0
177,445 + -1.7
177,448 - -1.9
177,468 + -1.4
177,501 - HMPREF1078_RS13645 0.11 -3.4
177,501 - HMPREF1078_RS13645 0.11 -3.5
177,563 + HMPREF1078_RS13645 0.16 -1.8
177,589 + HMPREF1078_RS13645 0.19 -2.1
177,595 - HMPREF1078_RS13645 0.20 -2.1
177,634 - HMPREF1078_RS13645 0.23 -2.4
177,644 + HMPREF1078_RS13645 0.24 -3.3
177,645 - HMPREF1078_RS13645 0.24 -4.2
177,665 + HMPREF1078_RS13645 0.26 -2.1
177,666 - HMPREF1078_RS13645 0.26 -1.1
177,666 - HMPREF1078_RS13645 0.26 -1.8
177,666 - HMPREF1078_RS13645 0.26 -1.4
177,707 - HMPREF1078_RS13645 0.30 -0.7
177,714 - HMPREF1078_RS13645 0.31 -2.4
177,719 + HMPREF1078_RS13645 0.31 -1.8
177,720 - HMPREF1078_RS13645 0.31 -2.9
177,720 - HMPREF1078_RS13645 0.31 -1.4
177,747 - HMPREF1078_RS13645 0.34 -0.9
177,747 - HMPREF1078_RS13645 0.34 -0.8
177,747 - HMPREF1078_RS13645 0.34 -1.9
177,759 + HMPREF1078_RS13645 0.35 -3.7
177,759 + HMPREF1078_RS13645 0.35 -2.7
177,763 + HMPREF1078_RS13645 0.35 -2.2
177,763 + HMPREF1078_RS13645 0.35 -0.1
177,763 + HMPREF1078_RS13645 0.35 -1.6
177,774 + HMPREF1078_RS13645 0.36 +0.1
177,792 + HMPREF1078_RS13645 0.38 -1.4
177,830 + HMPREF1078_RS13645 0.42 -3.2
177,830 + HMPREF1078_RS13645 0.42 -0.8
177,898 - HMPREF1078_RS13645 0.48 -3.0
177,898 - HMPREF1078_RS13645 0.48 +0.9
177,930 + HMPREF1078_RS13645 0.51 -4.0
177,931 - HMPREF1078_RS13645 0.51 -1.4
177,937 + HMPREF1078_RS13645 0.52 -1.7
177,989 + HMPREF1078_RS13645 0.57 -0.9
177,989 + HMPREF1078_RS13645 0.57 -4.1
177,989 + HMPREF1078_RS13645 0.57 -2.2
177,990 - HMPREF1078_RS13645 0.57 -0.5
177,990 - HMPREF1078_RS13645 0.57 -2.1
177,990 - HMPREF1078_RS13645 0.57 -1.4
177,990 - HMPREF1078_RS13645 0.57 -4.1
177,990 - HMPREF1078_RS13645 0.57 -2.1
177,990 - HMPREF1078_RS13645 0.57 -0.7
177,990 - HMPREF1078_RS13645 0.57 -4.8
177,993 + HMPREF1078_RS13645 0.57 -2.4
177,993 + HMPREF1078_RS13645 0.57 -3.2
177,993 + HMPREF1078_RS13645 0.57 -2.1
177,993 + HMPREF1078_RS13645 0.57 -2.6
177,993 + HMPREF1078_RS13645 0.57 -1.1
177,993 + HMPREF1078_RS13645 0.57 -2.9
177,994 - HMPREF1078_RS13645 0.57 +0.9
177,994 - HMPREF1078_RS13645 0.57 +0.9
177,994 - HMPREF1078_RS13645 0.57 -4.1
177,994 - HMPREF1078_RS13645 0.57 -2.0
177,994 - HMPREF1078_RS13645 0.57 -1.7
177,994 - HMPREF1078_RS13645 0.57 -1.9
178,005 - HMPREF1078_RS13645 0.58 -2.7
178,005 - HMPREF1078_RS13645 0.58 -1.7
178,125 + HMPREF1078_RS13645 0.70 -1.9
178,141 + HMPREF1078_RS13645 0.71 -4.0
178,142 - HMPREF1078_RS13645 0.71 -4.4
178,142 - HMPREF1078_RS13645 0.71 -1.6
178,142 - HMPREF1078_RS13645 0.71 -2.1
178,142 - HMPREF1078_RS13645 0.71 -3.0
178,161 + HMPREF1078_RS13645 0.73 -3.6
178,187 - HMPREF1078_RS13645 0.76 -3.4
178,229 - HMPREF1078_RS13645 0.80 -1.0

Or see this region's nucleotide sequence