Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13410 and HMPREF1078_RS13415 are separated by 84 nucleotides HMPREF1078_RS13415 and HMPREF1078_RS13420 are separated by 11 nucleotides HMPREF1078_RS13420 and HMPREF1078_RS13425 are separated by 24 nucleotides
HMPREF1078_RS13410: HMPREF1078_RS13410 - TonB-dependent receptor, at 120,027 to 122,351
_RS13410
HMPREF1078_RS13415: HMPREF1078_RS13415 - LuxR C-terminal-related transcriptional regulator, at 122,436 to 123,014
_RS13415
HMPREF1078_RS13420: HMPREF1078_RS13420 - hypothetical protein, at 123,026 to 123,715
_RS13420
HMPREF1078_RS13425: HMPREF1078_RS13425 - sugar phosphate isomerase/epimerase, at 123,740 to 124,681
_RS13425
Position (kb) 122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 122.369 kb on - strand at 122.437 kb on + strand at 122.483 kb on - strand at 122.667 kb on - strand, within HMPREF1078_RS13415 at 122.667 kb on - strand, within HMPREF1078_RS13415 at 122.858 kb on - strand, within HMPREF1078_RS13415 at 123.129 kb on - strand, within HMPREF1078_RS13420 at 123.129 kb on - strand, within HMPREF1078_RS13420 at 123.129 kb on - strand, within HMPREF1078_RS13420 at 123.144 kb on - strand, within HMPREF1078_RS13420 at 123.144 kb on - strand, within HMPREF1078_RS13420 at 123.144 kb on - strand, within HMPREF1078_RS13420 at 123.144 kb on - strand, within HMPREF1078_RS13420 at 123.144 kb on - strand, within HMPREF1078_RS13420 at 123.157 kb on - strand, within HMPREF1078_RS13420 at 123.413 kb on - strand, within HMPREF1078_RS13420 at 123.447 kb on - strand, within HMPREF1078_RS13420 at 123.447 kb on - strand, within HMPREF1078_RS13420 at 123.447 kb on - strand, within HMPREF1078_RS13420 at 123.449 kb on - strand, within HMPREF1078_RS13420 at 123.475 kb on - strand, within HMPREF1078_RS13420 at 123.475 kb on - strand, within HMPREF1078_RS13420 at 123.496 kb on - strand, within HMPREF1078_RS13420 at 123.547 kb on - strand, within HMPREF1078_RS13420 at 123.768 kb on - strand at 123.768 kb on - strand at 123.828 kb on - strand at 123.832 kb on - strand at 123.877 kb on - strand, within HMPREF1078_RS13425 at 123.881 kb on - strand, within HMPREF1078_RS13425 at 123.881 kb on - strand, within HMPREF1078_RS13425 at 123.881 kb on - strand, within HMPREF1078_RS13425
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 122,369 - -0.2 122,437 + -0.6 122,483 - +1.0 122,667 - HMPREF1078_RS13415 0.40 -1.7 122,667 - HMPREF1078_RS13415 0.40 -1.7 122,858 - HMPREF1078_RS13415 0.73 +0.9 123,129 - HMPREF1078_RS13420 0.15 +0.1 123,129 - HMPREF1078_RS13420 0.15 -0.9 123,129 - HMPREF1078_RS13420 0.15 +1.3 123,144 - HMPREF1078_RS13420 0.17 +0.7 123,144 - HMPREF1078_RS13420 0.17 -0.2 123,144 - HMPREF1078_RS13420 0.17 +0.4 123,144 - HMPREF1078_RS13420 0.17 -0.4 123,144 - HMPREF1078_RS13420 0.17 -0.7 123,157 - HMPREF1078_RS13420 0.19 +0.1 123,413 - HMPREF1078_RS13420 0.56 +0.9 123,447 - HMPREF1078_RS13420 0.61 +1.3 123,447 - HMPREF1078_RS13420 0.61 +0.1 123,447 - HMPREF1078_RS13420 0.61 -0.1 123,449 - HMPREF1078_RS13420 0.61 -1.4 123,475 - HMPREF1078_RS13420 0.65 +0.9 123,475 - HMPREF1078_RS13420 0.65 -1.4 123,496 - HMPREF1078_RS13420 0.68 -0.7 123,547 - HMPREF1078_RS13420 0.76 -0.9 123,768 - -1.1 123,768 - -1.1 123,828 - +0.9 123,832 - -0.7 123,877 - HMPREF1078_RS13425 0.15 -0.7 123,881 - HMPREF1078_RS13425 0.15 -2.8 123,881 - HMPREF1078_RS13425 0.15 -1.3 123,881 - HMPREF1078_RS13425 0.15 -1.7
Or see this region's nucleotide sequence