Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13300 and HMPREF1078_RS13305 are separated by 63 nucleotides HMPREF1078_RS13305 and HMPREF1078_RS13310 are separated by 82 nucleotides HMPREF1078_RS13310 and HMPREF1078_RS13315 overlap by 4 nucleotides HMPREF1078_RS13315 and HMPREF1078_RS13320 are separated by 80 nucleotides
HMPREF1078_RS13300: HMPREF1078_RS13300 - sulfatase, at 92,056 to 93,630
_RS13300
HMPREF1078_RS13305: HMPREF1078_RS13305 - tRNA-Ala, at 93,694 to 93,767
_RS13305
HMPREF1078_RS13310: HMPREF1078_RS13310 - DUF4286 family protein, at 93,850 to 94,164
_RS13310
HMPREF1078_RS13315: HMPREF1078_RS13315 - crossover junction endodeoxyribonuclease RuvC, at 94,161 to 94,718
_RS13315
HMPREF1078_RS13320: HMPREF1078_RS13320 - NADP-specific glutamate dehydrogenase, at 94,799 to 96,133
_RS13320
Position (kb) 94
95 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 93.163 kb on + strand, within HMPREF1078_RS13300 at 93.164 kb on - strand, within HMPREF1078_RS13300 at 93.164 kb on - strand, within HMPREF1078_RS13300 at 93.164 kb on - strand, within HMPREF1078_RS13300 at 93.313 kb on + strand, within HMPREF1078_RS13300 at 93.313 kb on + strand, within HMPREF1078_RS13300 at 93.314 kb on - strand, within HMPREF1078_RS13300 at 93.348 kb on - strand, within HMPREF1078_RS13300 at 93.362 kb on + strand, within HMPREF1078_RS13300 at 93.365 kb on - strand, within HMPREF1078_RS13300 at 93.401 kb on + strand, within HMPREF1078_RS13300 at 93.441 kb on - strand, within HMPREF1078_RS13300 at 93.452 kb on - strand, within HMPREF1078_RS13300 at 93.457 kb on + strand, within HMPREF1078_RS13300 at 93.479 kb on - strand at 93.513 kb on + strand at 93.513 kb on + strand at 93.514 kb on - strand at 93.514 kb on - strand at 93.514 kb on - strand at 93.517 kb on + strand at 93.628 kb on + strand at 93.628 kb on + strand at 93.634 kb on - strand at 93.677 kb on + strand at 93.677 kb on + strand at 93.678 kb on - strand at 93.681 kb on + strand at 93.681 kb on + strand at 93.682 kb on - strand at 93.687 kb on - strand at 93.701 kb on + strand at 93.701 kb on + strand at 93.746 kb on + strand, within HMPREF1078_RS13305 at 93.747 kb on - strand, within HMPREF1078_RS13305 at 93.747 kb on - strand, within HMPREF1078_RS13305 at 93.759 kb on + strand, within HMPREF1078_RS13305 at 93.759 kb on + strand, within HMPREF1078_RS13305 at 93.760 kb on - strand at 93.793 kb on - strand at 93.809 kb on + strand at 93.811 kb on + strand at 93.811 kb on + strand at 93.811 kb on + strand at 93.812 kb on - strand at 93.812 kb on - strand at 93.812 kb on - strand at 93.812 kb on - strand at 93.847 kb on - strand at 93.864 kb on + strand at 93.865 kb on - strand at 93.865 kb on - strand at 93.865 kb on - strand at 93.877 kb on - strand at 93.922 kb on + strand, within HMPREF1078_RS13310 at 93.925 kb on + strand, within HMPREF1078_RS13310 at 93.956 kb on + strand, within HMPREF1078_RS13310 at 94.077 kb on + strand, within HMPREF1078_RS13310 at 94.078 kb on - strand, within HMPREF1078_RS13310 at 94.114 kb on - strand, within HMPREF1078_RS13310 at 94.131 kb on + strand, within HMPREF1078_RS13310 at 94.136 kb on + strand at 94.137 kb on - strand at 94.137 kb on - strand at 94.148 kb on + strand at 94.148 kb on + strand at 94.149 kb on - strand at 94.180 kb on + strand at 94.259 kb on + strand, within HMPREF1078_RS13315 at 94.260 kb on - strand, within HMPREF1078_RS13315 at 94.280 kb on + strand, within HMPREF1078_RS13315 at 94.296 kb on + strand, within HMPREF1078_RS13315 at 94.296 kb on + strand, within HMPREF1078_RS13315 at 94.296 kb on + strand, within HMPREF1078_RS13315 at 94.347 kb on + strand, within HMPREF1078_RS13315 at 94.348 kb on - strand, within HMPREF1078_RS13315 at 94.396 kb on + strand, within HMPREF1078_RS13315 at 94.397 kb on - strand, within HMPREF1078_RS13315 at 94.403 kb on + strand, within HMPREF1078_RS13315 at 94.403 kb on + strand, within HMPREF1078_RS13315 at 94.404 kb on - strand, within HMPREF1078_RS13315 at 94.404 kb on - strand, within HMPREF1078_RS13315 at 94.404 kb on - strand, within HMPREF1078_RS13315 at 94.476 kb on + strand, within HMPREF1078_RS13315 at 94.550 kb on - strand, within HMPREF1078_RS13315 at 94.550 kb on - strand, within HMPREF1078_RS13315 at 94.742 kb on - strand at 94.761 kb on + strand at 94.761 kb on + strand at 94.762 kb on - strand at 94.775 kb on + strand at 94.775 kb on + strand at 94.776 kb on - strand at 94.776 kb on - strand at 94.779 kb on + strand at 94.779 kb on + strand at 94.779 kb on + strand at 94.781 kb on + strand at 94.781 kb on + strand at 94.781 kb on + strand at 94.781 kb on + strand at 94.782 kb on - strand at 94.800 kb on + strand at 94.800 kb on + strand at 94.800 kb on + strand at 94.802 kb on + strand at 94.869 kb on + strand at 94.869 kb on + strand at 94.870 kb on - strand at 94.875 kb on + strand at 94.876 kb on + strand at 94.876 kb on + strand at 94.877 kb on - strand at 94.877 kb on - strand at 94.878 kb on + strand at 94.878 kb on + strand at 94.879 kb on - strand at 94.879 kb on - strand at 94.879 kb on - strand at 94.879 kb on - strand at 94.972 kb on + strand, within HMPREF1078_RS13320 at 94.972 kb on + strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 94.973 kb on - strand, within HMPREF1078_RS13320 at 95.089 kb on + strand, within HMPREF1078_RS13320 at 95.089 kb on + strand, within HMPREF1078_RS13320 at 95.106 kb on - strand, within HMPREF1078_RS13320 at 95.114 kb on + strand, within HMPREF1078_RS13320 at 95.260 kb on - strand, within HMPREF1078_RS13320 at 95.267 kb on + strand, within HMPREF1078_RS13320 at 95.267 kb on + strand, within HMPREF1078_RS13320 at 95.268 kb on - strand, within HMPREF1078_RS13320 at 95.268 kb on - strand, within HMPREF1078_RS13320 at 95.272 kb on + strand, within HMPREF1078_RS13320 at 95.279 kb on - strand, within HMPREF1078_RS13320 at 95.288 kb on - strand, within HMPREF1078_RS13320 at 95.303 kb on - strand, within HMPREF1078_RS13320 at 95.304 kb on + strand, within HMPREF1078_RS13320 at 95.341 kb on - strand, within HMPREF1078_RS13320 at 95.341 kb on - strand, within HMPREF1078_RS13320 at 95.344 kb on + strand, within HMPREF1078_RS13320 at 95.344 kb on + strand, within HMPREF1078_RS13320 at 95.344 kb on + strand, within HMPREF1078_RS13320 at 95.345 kb on - strand, within HMPREF1078_RS13320 at 95.345 kb on - strand, within HMPREF1078_RS13320 at 95.345 kb on - strand, within HMPREF1078_RS13320 at 95.345 kb on - strand, within HMPREF1078_RS13320 at 95.345 kb on - strand, within HMPREF1078_RS13320 at 95.345 kb on - strand, within HMPREF1078_RS13320 at 95.345 kb on - strand, within HMPREF1078_RS13320 at 95.346 kb on + strand, within HMPREF1078_RS13320 at 95.347 kb on - strand, within HMPREF1078_RS13320 at 95.438 kb on - strand, within HMPREF1078_RS13320 at 95.455 kb on + strand, within HMPREF1078_RS13320 at 95.455 kb on + strand, within HMPREF1078_RS13320 at 95.458 kb on + strand, within HMPREF1078_RS13320 at 95.458 kb on + strand, within HMPREF1078_RS13320 at 95.459 kb on - strand, within HMPREF1078_RS13320 at 95.462 kb on + strand, within HMPREF1078_RS13320 at 95.462 kb on + strand, within HMPREF1078_RS13320 at 95.463 kb on - strand, within HMPREF1078_RS13320 at 95.463 kb on - strand, within HMPREF1078_RS13320 at 95.464 kb on + strand, within HMPREF1078_RS13320 at 95.465 kb on - strand, within HMPREF1078_RS13320 at 95.533 kb on + strand, within HMPREF1078_RS13320 at 95.534 kb on - strand, within HMPREF1078_RS13320 at 95.569 kb on + strand, within HMPREF1078_RS13320 at 95.599 kb on - strand, within HMPREF1078_RS13320 at 95.599 kb on - strand, within HMPREF1078_RS13320 at 95.599 kb on - strand, within HMPREF1078_RS13320 at 95.599 kb on - strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.602 kb on + strand, within HMPREF1078_RS13320 at 95.603 kb on - strand, within HMPREF1078_RS13320 at 95.603 kb on - strand, within HMPREF1078_RS13320 at 95.603 kb on - strand, within HMPREF1078_RS13320 at 95.603 kb on - strand, within HMPREF1078_RS13320 at 95.607 kb on + strand, within HMPREF1078_RS13320 at 95.608 kb on - strand, within HMPREF1078_RS13320 at 95.608 kb on - strand, within HMPREF1078_RS13320 at 95.608 kb on - strand, within HMPREF1078_RS13320 at 95.611 kb on + strand, within HMPREF1078_RS13320 at 95.611 kb on + strand, within HMPREF1078_RS13320 at 95.611 kb on + strand, within HMPREF1078_RS13320 at 95.611 kb on + strand, within HMPREF1078_RS13320 at 95.611 kb on + strand, within HMPREF1078_RS13320 at 95.612 kb on - strand, within HMPREF1078_RS13320 at 95.612 kb on - strand, within HMPREF1078_RS13320 at 95.612 kb on - strand, within HMPREF1078_RS13320 at 95.612 kb on - strand, within HMPREF1078_RS13320 at 95.612 kb on - strand, within HMPREF1078_RS13320 at 95.613 kb on + strand, within HMPREF1078_RS13320 at 95.613 kb on + strand, within HMPREF1078_RS13320 at 95.613 kb on + strand, within HMPREF1078_RS13320 at 95.614 kb on - strand, within HMPREF1078_RS13320 at 95.614 kb on - strand, within HMPREF1078_RS13320 at 95.633 kb on + strand, within HMPREF1078_RS13320
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 93,163 + HMPREF1078_RS13300 0.70 +0.4 93,164 - HMPREF1078_RS13300 0.70 +0.1 93,164 - HMPREF1078_RS13300 0.70 -0.7 93,164 - HMPREF1078_RS13300 0.70 +0.7 93,313 + HMPREF1078_RS13300 0.80 +1.6 93,313 + HMPREF1078_RS13300 0.80 +0.4 93,314 - HMPREF1078_RS13300 0.80 +0.1 93,348 - HMPREF1078_RS13300 0.82 -0.1 93,362 + HMPREF1078_RS13300 0.83 +0.5 93,365 - HMPREF1078_RS13300 0.83 -0.4 93,401 + HMPREF1078_RS13300 0.85 +0.8 93,441 - HMPREF1078_RS13300 0.88 -1.9 93,452 - HMPREF1078_RS13300 0.89 +1.9 93,457 + HMPREF1078_RS13300 0.89 -3.3 93,479 - -1.5 93,513 + -0.2 93,513 + -0.1 93,514 - -0.3 93,514 - +0.4 93,514 - +0.7 93,517 + -2.3 93,628 + -1.7 93,628 + -0.1 93,634 - -2.3 93,677 + +0.8 93,677 + -0.1 93,678 - +0.5 93,681 + +0.8 93,681 + -0.7 93,682 - -1.8 93,687 - +0.6 93,701 + -1.4 93,701 + -3.9 93,746 + HMPREF1078_RS13305 0.70 +0.5 93,747 - HMPREF1078_RS13305 0.72 -0.3 93,747 - HMPREF1078_RS13305 0.72 +0.5 93,759 + HMPREF1078_RS13305 0.88 -2.4 93,759 + HMPREF1078_RS13305 0.88 -0.1 93,760 - -0.2 93,793 - +2.1 93,809 + -0.8 93,811 + -1.1 93,811 + +0.7 93,811 + +0.9 93,812 - -2.1 93,812 - -1.4 93,812 - +0.9 93,812 - +0.9 93,847 - -2.1 93,864 + -2.9 93,865 - -3.4 93,865 - -1.9 93,865 - -2.3 93,877 - -2.6 93,922 + HMPREF1078_RS13310 0.23 -2.6 93,925 + HMPREF1078_RS13310 0.24 -0.7 93,956 + HMPREF1078_RS13310 0.34 +0.7 94,077 + HMPREF1078_RS13310 0.72 -0.1 94,078 - HMPREF1078_RS13310 0.72 -1.4 94,114 - HMPREF1078_RS13310 0.84 -0.7 94,131 + HMPREF1078_RS13310 0.89 -0.4 94,136 + -0.3 94,137 - -2.6 94,137 - -0.7 94,148 + -0.1 94,148 + +0.9 94,149 - -0.7 94,180 + -1.7 94,259 + HMPREF1078_RS13315 0.18 -2.4 94,260 - HMPREF1078_RS13315 0.18 +0.9 94,280 + HMPREF1078_RS13315 0.21 +0.9 94,296 + HMPREF1078_RS13315 0.24 -3.6 94,296 + HMPREF1078_RS13315 0.24 -1.7 94,296 + HMPREF1078_RS13315 0.24 -2.3 94,347 + HMPREF1078_RS13315 0.33 +0.9 94,348 - HMPREF1078_RS13315 0.34 -4.2 94,396 + HMPREF1078_RS13315 0.42 -1.4 94,397 - HMPREF1078_RS13315 0.42 -2.7 94,403 + HMPREF1078_RS13315 0.43 -1.7 94,403 + HMPREF1078_RS13315 0.43 -0.7 94,404 - HMPREF1078_RS13315 0.44 -0.1 94,404 - HMPREF1078_RS13315 0.44 +0.9 94,404 - HMPREF1078_RS13315 0.44 -3.1 94,476 + HMPREF1078_RS13315 0.56 -1.4 94,550 - HMPREF1078_RS13315 0.70 -0.1 94,550 - HMPREF1078_RS13315 0.70 -2.4 94,742 - -1.1 94,761 + -0.7 94,761 + -2.0 94,762 - +0.7 94,775 + -0.2 94,775 + +0.4 94,776 - -0.8 94,776 - -0.6 94,779 + +0.9 94,779 + +1.0 94,779 + +0.2 94,781 + -1.1 94,781 + +0.0 94,781 + -0.5 94,781 + -0.2 94,782 - -0.5 94,800 + -2.4 94,800 + +0.2 94,800 + -0.0 94,802 + -0.2 94,869 + +1.6 94,869 + -0.1 94,870 - -1.7 94,875 + +1.5 94,876 + +1.7 94,876 + -1.1 94,877 - -0.1 94,877 - -0.1 94,878 + -0.7 94,878 + -1.4 94,879 - -1.0 94,879 - +0.9 94,879 - -0.6 94,879 - +0.1 94,972 + HMPREF1078_RS13320 0.13 -2.1 94,972 + HMPREF1078_RS13320 0.13 +0.5 94,973 - HMPREF1078_RS13320 0.13 -0.6 94,973 - HMPREF1078_RS13320 0.13 -0.7 94,973 - HMPREF1078_RS13320 0.13 -0.3 94,973 - HMPREF1078_RS13320 0.13 -1.9 95,089 + HMPREF1078_RS13320 0.22 -1.9 95,089 + HMPREF1078_RS13320 0.22 +0.5 95,106 - HMPREF1078_RS13320 0.23 -2.3 95,114 + HMPREF1078_RS13320 0.24 -0.8 95,260 - HMPREF1078_RS13320 0.35 -0.3 95,267 + HMPREF1078_RS13320 0.35 -0.1 95,267 + HMPREF1078_RS13320 0.35 -0.2 95,268 - HMPREF1078_RS13320 0.35 +0.9 95,268 - HMPREF1078_RS13320 0.35 -1.4 95,272 + HMPREF1078_RS13320 0.35 -2.3 95,279 - HMPREF1078_RS13320 0.36 -2.4 95,288 - HMPREF1078_RS13320 0.37 -1.1 95,303 - HMPREF1078_RS13320 0.38 +2.1 95,304 + HMPREF1078_RS13320 0.38 -0.9 95,341 - HMPREF1078_RS13320 0.41 -1.3 95,341 - HMPREF1078_RS13320 0.41 +1.9 95,344 + HMPREF1078_RS13320 0.41 -0.6 95,344 + HMPREF1078_RS13320 0.41 -0.4 95,344 + HMPREF1078_RS13320 0.41 +0.0 95,345 - HMPREF1078_RS13320 0.41 -0.4 95,345 - HMPREF1078_RS13320 0.41 -2.7 95,345 - HMPREF1078_RS13320 0.41 -2.5 95,345 - HMPREF1078_RS13320 0.41 -1.1 95,345 - HMPREF1078_RS13320 0.41 +0.2 95,345 - HMPREF1078_RS13320 0.41 -0.5 95,345 - HMPREF1078_RS13320 0.41 -0.2 95,346 + HMPREF1078_RS13320 0.41 -0.1 95,347 - HMPREF1078_RS13320 0.41 -1.9 95,438 - HMPREF1078_RS13320 0.48 -0.6 95,455 + HMPREF1078_RS13320 0.49 -1.1 95,455 + HMPREF1078_RS13320 0.49 -0.8 95,458 + HMPREF1078_RS13320 0.49 -0.4 95,458 + HMPREF1078_RS13320 0.49 -3.9 95,459 - HMPREF1078_RS13320 0.49 -0.1 95,462 + HMPREF1078_RS13320 0.50 +1.5 95,462 + HMPREF1078_RS13320 0.50 -1.9 95,463 - HMPREF1078_RS13320 0.50 -0.7 95,463 - HMPREF1078_RS13320 0.50 +0.6 95,464 + HMPREF1078_RS13320 0.50 +1.5 95,465 - HMPREF1078_RS13320 0.50 +1.3 95,533 + HMPREF1078_RS13320 0.55 +0.9 95,534 - HMPREF1078_RS13320 0.55 +0.5 95,569 + HMPREF1078_RS13320 0.58 +0.9 95,599 - HMPREF1078_RS13320 0.60 -0.0 95,599 - HMPREF1078_RS13320 0.60 -0.8 95,599 - HMPREF1078_RS13320 0.60 +0.9 95,599 - HMPREF1078_RS13320 0.60 -0.7 95,602 + HMPREF1078_RS13320 0.60 -0.8 95,602 + HMPREF1078_RS13320 0.60 -0.7 95,602 + HMPREF1078_RS13320 0.60 +0.9 95,602 + HMPREF1078_RS13320 0.60 +0.2 95,602 + HMPREF1078_RS13320 0.60 +0.3 95,602 + HMPREF1078_RS13320 0.60 -2.6 95,602 + HMPREF1078_RS13320 0.60 -1.9 95,602 + HMPREF1078_RS13320 0.60 -3.2 95,602 + HMPREF1078_RS13320 0.60 +0.3 95,602 + HMPREF1078_RS13320 0.60 -0.1 95,602 + HMPREF1078_RS13320 0.60 -1.1 95,603 - HMPREF1078_RS13320 0.60 -0.1 95,603 - HMPREF1078_RS13320 0.60 +0.0 95,603 - HMPREF1078_RS13320 0.60 +0.1 95,603 - HMPREF1078_RS13320 0.60 +0.6 95,607 + HMPREF1078_RS13320 0.61 -1.4 95,608 - HMPREF1078_RS13320 0.61 -1.4 95,608 - HMPREF1078_RS13320 0.61 +0.8 95,608 - HMPREF1078_RS13320 0.61 +0.3 95,611 + HMPREF1078_RS13320 0.61 +0.3 95,611 + HMPREF1078_RS13320 0.61 +1.9 95,611 + HMPREF1078_RS13320 0.61 -1.7 95,611 + HMPREF1078_RS13320 0.61 -0.9 95,611 + HMPREF1078_RS13320 0.61 -1.1 95,612 - HMPREF1078_RS13320 0.61 +0.1 95,612 - HMPREF1078_RS13320 0.61 -1.1 95,612 - HMPREF1078_RS13320 0.61 -1.4 95,612 - HMPREF1078_RS13320 0.61 +2.2 95,612 - HMPREF1078_RS13320 0.61 -1.0 95,613 + HMPREF1078_RS13320 0.61 -2.1 95,613 + HMPREF1078_RS13320 0.61 -0.7 95,613 + HMPREF1078_RS13320 0.61 -1.6 95,614 - HMPREF1078_RS13320 0.61 -0.9 95,614 - HMPREF1078_RS13320 0.61 -0.1 95,633 + HMPREF1078_RS13320 0.62 -0.1
Or see this region's nucleotide sequence