Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12785 and HMPREF1078_RS12790 are separated by 96 nucleotides HMPREF1078_RS12790 and HMPREF1078_RS12795 are separated by 170 nucleotides HMPREF1078_RS12795 and HMPREF1078_RS12800 are separated by 14 nucleotides
HMPREF1078_RS12785: HMPREF1078_RS12785 - S8 family serine peptidase, at 584,175 to 585,545
_RS12785
HMPREF1078_RS12790: HMPREF1078_RS12790 - Lrp/AsnC ligand binding domain-containing protein, at 585,642 to 586,109
_RS12790
HMPREF1078_RS12795: HMPREF1078_RS12795 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 586,280 to 587,005
_RS12795
HMPREF1078_RS12800: HMPREF1078_RS12800 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 587,020 to 587,607
_RS12800
Position (kb) 585
586
587 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 584.823 kb on - strand, within HMPREF1078_RS12785 at 584.823 kb on - strand, within HMPREF1078_RS12785 at 584.834 kb on - strand, within HMPREF1078_RS12785 at 584.874 kb on - strand, within HMPREF1078_RS12785 at 584.944 kb on - strand, within HMPREF1078_RS12785 at 584.962 kb on - strand, within HMPREF1078_RS12785 at 585.006 kb on - strand, within HMPREF1078_RS12785 at 585.121 kb on - strand, within HMPREF1078_RS12785 at 585.246 kb on - strand, within HMPREF1078_RS12785 at 585.332 kb on - strand, within HMPREF1078_RS12785 at 585.332 kb on - strand, within HMPREF1078_RS12785 at 585.479 kb on - strand at 585.496 kb on - strand at 585.555 kb on - strand at 585.582 kb on - strand at 585.582 kb on - strand at 585.591 kb on - strand at 585.626 kb on + strand at 585.626 kb on + strand at 585.626 kb on + strand at 585.627 kb on - strand at 585.627 kb on - strand at 585.627 kb on - strand at 585.627 kb on - strand at 585.628 kb on + strand at 585.628 kb on + strand at 585.629 kb on - strand at 585.629 kb on - strand at 585.629 kb on - strand at 585.634 kb on - strand at 585.634 kb on - strand at 585.634 kb on - strand at 585.634 kb on - strand at 585.654 kb on - strand at 585.663 kb on - strand at 585.678 kb on + strand at 585.679 kb on - strand at 585.679 kb on - strand at 585.726 kb on + strand, within HMPREF1078_RS12790 at 585.735 kb on + strand, within HMPREF1078_RS12790 at 585.735 kb on + strand, within HMPREF1078_RS12790 at 585.781 kb on + strand, within HMPREF1078_RS12790 at 585.781 kb on + strand, within HMPREF1078_RS12790 at 585.783 kb on + strand, within HMPREF1078_RS12790 at 585.783 kb on + strand, within HMPREF1078_RS12790 at 585.783 kb on + strand, within HMPREF1078_RS12790 at 585.784 kb on - strand, within HMPREF1078_RS12790 at 585.784 kb on - strand, within HMPREF1078_RS12790 at 585.800 kb on + strand, within HMPREF1078_RS12790 at 585.816 kb on - strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.871 kb on + strand, within HMPREF1078_RS12790 at 585.872 kb on - strand, within HMPREF1078_RS12790 at 585.872 kb on - strand, within HMPREF1078_RS12790 at 585.895 kb on - strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.904 kb on + strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.905 kb on - strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.908 kb on + strand, within HMPREF1078_RS12790 at 585.909 kb on - strand, within HMPREF1078_RS12790 at 585.917 kb on + strand, within HMPREF1078_RS12790 at 585.917 kb on + strand, within HMPREF1078_RS12790 at 585.917 kb on + strand, within HMPREF1078_RS12790 at 585.918 kb on - strand, within HMPREF1078_RS12790 at 585.918 kb on - strand, within HMPREF1078_RS12790 at 585.918 kb on - strand, within HMPREF1078_RS12790 at 585.919 kb on + strand, within HMPREF1078_RS12790 at 585.919 kb on + strand, within HMPREF1078_RS12790 at 585.938 kb on + strand, within HMPREF1078_RS12790 at 585.941 kb on + strand, within HMPREF1078_RS12790 at 585.941 kb on + strand, within HMPREF1078_RS12790 at 585.941 kb on + strand, within HMPREF1078_RS12790 at 585.942 kb on - strand, within HMPREF1078_RS12790 at 585.942 kb on - strand, within HMPREF1078_RS12790 at 585.947 kb on - strand, within HMPREF1078_RS12790 at 585.971 kb on + strand, within HMPREF1078_RS12790 at 585.971 kb on + strand, within HMPREF1078_RS12790 at 585.972 kb on - strand, within HMPREF1078_RS12790 at 585.972 kb on - strand, within HMPREF1078_RS12790 at 586.068 kb on - strand at 586.068 kb on - strand at 586.077 kb on + strand at 586.115 kb on - strand at 586.115 kb on - strand at 586.118 kb on + strand at 586.119 kb on - strand at 586.119 kb on - strand at 586.124 kb on - strand at 586.124 kb on - strand at 586.137 kb on - strand at 586.147 kb on + strand at 586.159 kb on - strand at 586.159 kb on - strand at 586.161 kb on - strand at 586.173 kb on + strand at 586.234 kb on - strand at 586.237 kb on + strand at 586.238 kb on - strand at 586.263 kb on + strand at 586.264 kb on - strand at 586.307 kb on + strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.308 kb on - strand at 586.343 kb on - strand at 586.343 kb on - strand at 586.411 kb on + strand, within HMPREF1078_RS12795 at 586.414 kb on - strand, within HMPREF1078_RS12795 at 586.414 kb on - strand, within HMPREF1078_RS12795 at 586.523 kb on - strand, within HMPREF1078_RS12795 at 586.541 kb on - strand, within HMPREF1078_RS12795 at 586.541 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.549 kb on - strand, within HMPREF1078_RS12795 at 586.565 kb on - strand, within HMPREF1078_RS12795 at 586.592 kb on - strand, within HMPREF1078_RS12795 at 586.592 kb on - strand, within HMPREF1078_RS12795 at 586.592 kb on - strand, within HMPREF1078_RS12795 at 586.600 kb on + strand, within HMPREF1078_RS12795 at 586.601 kb on - strand, within HMPREF1078_RS12795 at 586.601 kb on - strand, within HMPREF1078_RS12795 at 586.604 kb on + strand, within HMPREF1078_RS12795 at 586.604 kb on + strand, within HMPREF1078_RS12795 at 586.604 kb on + strand, within HMPREF1078_RS12795 at 586.605 kb on - strand, within HMPREF1078_RS12795 at 586.611 kb on + strand, within HMPREF1078_RS12795 at 586.637 kb on - strand, within HMPREF1078_RS12795 at 586.725 kb on + strand, within HMPREF1078_RS12795 at 586.725 kb on + strand, within HMPREF1078_RS12795 at 586.726 kb on - strand, within HMPREF1078_RS12795 at 586.737 kb on + strand, within HMPREF1078_RS12795 at 586.738 kb on - strand, within HMPREF1078_RS12795 at 586.765 kb on - strand, within HMPREF1078_RS12795 at 586.825 kb on + strand, within HMPREF1078_RS12795 at 586.904 kb on - strand, within HMPREF1078_RS12795 at 586.954 kb on + strand at 586.954 kb on + strand at 586.954 kb on + strand at 586.954 kb on + strand at 586.955 kb on - strand at 586.955 kb on - strand at 586.955 kb on - strand at 586.955 kb on - strand at 586.957 kb on + strand at 586.958 kb on - strand at 586.963 kb on + strand at 586.963 kb on + strand at 586.963 kb on + strand at 586.963 kb on + strand at 586.964 kb on - strand at 586.968 kb on - strand at 586.968 kb on - strand at 586.978 kb on + strand at 586.988 kb on + strand at 586.989 kb on - strand at 586.989 kb on - strand at 586.989 kb on - strand at 587.013 kb on + strand at 587.016 kb on + strand at 587.016 kb on + strand at 587.016 kb on + strand at 587.017 kb on - strand at 587.026 kb on + strand at 587.026 kb on + strand at 587.026 kb on + strand at 587.026 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.029 kb on + strand at 587.030 kb on - strand at 587.030 kb on - strand at 587.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 584,823 - HMPREF1078_RS12785 0.47 -0.1 584,823 - HMPREF1078_RS12785 0.47 -0.5 584,834 - HMPREF1078_RS12785 0.48 -0.3 584,874 - HMPREF1078_RS12785 0.51 -0.7 584,944 - HMPREF1078_RS12785 0.56 -0.4 584,962 - HMPREF1078_RS12785 0.57 +0.1 585,006 - HMPREF1078_RS12785 0.61 +0.4 585,121 - HMPREF1078_RS12785 0.69 -0.7 585,246 - HMPREF1078_RS12785 0.78 -0.5 585,332 - HMPREF1078_RS12785 0.84 -0.1 585,332 - HMPREF1078_RS12785 0.84 -1.4 585,479 - -0.3 585,496 - -2.2 585,555 - +2.1 585,582 - -0.1 585,582 - -0.8 585,591 - +0.4 585,626 + +0.5 585,626 + +0.1 585,626 + -2.7 585,627 - -0.9 585,627 - +0.1 585,627 - +0.1 585,627 - -0.2 585,628 + +0.0 585,628 + +0.1 585,629 - +2.3 585,629 - +0.6 585,629 - -0.1 585,634 - -0.3 585,634 - +1.5 585,634 - -0.0 585,634 - -0.5 585,654 - -0.5 585,663 - -1.3 585,678 + -1.1 585,679 - -1.7 585,679 - -1.2 585,726 + HMPREF1078_RS12790 0.18 -1.4 585,735 + HMPREF1078_RS12790 0.20 -2.8 585,735 + HMPREF1078_RS12790 0.20 -3.1 585,781 + HMPREF1078_RS12790 0.30 -1.1 585,781 + HMPREF1078_RS12790 0.30 -0.9 585,783 + HMPREF1078_RS12790 0.30 -2.1 585,783 + HMPREF1078_RS12790 0.30 +0.9 585,783 + HMPREF1078_RS12790 0.30 -2.4 585,784 - HMPREF1078_RS12790 0.30 -2.2 585,784 - HMPREF1078_RS12790 0.30 -0.9 585,800 + HMPREF1078_RS12790 0.34 -2.2 585,816 - HMPREF1078_RS12790 0.37 +0.7 585,871 + HMPREF1078_RS12790 0.49 -2.1 585,871 + HMPREF1078_RS12790 0.49 +0.9 585,871 + HMPREF1078_RS12790 0.49 -2.7 585,871 + HMPREF1078_RS12790 0.49 -2.2 585,872 - HMPREF1078_RS12790 0.49 -2.4 585,872 - HMPREF1078_RS12790 0.49 -1.1 585,895 - HMPREF1078_RS12790 0.54 -2.7 585,904 + HMPREF1078_RS12790 0.56 -1.4 585,904 + HMPREF1078_RS12790 0.56 -0.1 585,904 + HMPREF1078_RS12790 0.56 -0.1 585,904 + HMPREF1078_RS12790 0.56 +0.9 585,905 - HMPREF1078_RS12790 0.56 -3.4 585,905 - HMPREF1078_RS12790 0.56 -0.9 585,905 - HMPREF1078_RS12790 0.56 -1.4 585,905 - HMPREF1078_RS12790 0.56 -3.2 585,908 + HMPREF1078_RS12790 0.57 +0.9 585,908 + HMPREF1078_RS12790 0.57 -1.2 585,908 + HMPREF1078_RS12790 0.57 -2.8 585,908 + HMPREF1078_RS12790 0.57 -1.1 585,908 + HMPREF1078_RS12790 0.57 -1.9 585,909 - HMPREF1078_RS12790 0.57 -0.1 585,917 + HMPREF1078_RS12790 0.59 -3.3 585,917 + HMPREF1078_RS12790 0.59 -2.4 585,917 + HMPREF1078_RS12790 0.59 -1.7 585,918 - HMPREF1078_RS12790 0.59 -1.4 585,918 - HMPREF1078_RS12790 0.59 -2.0 585,918 - HMPREF1078_RS12790 0.59 -3.1 585,919 + HMPREF1078_RS12790 0.59 -1.2 585,919 + HMPREF1078_RS12790 0.59 -0.5 585,938 + HMPREF1078_RS12790 0.63 -2.5 585,941 + HMPREF1078_RS12790 0.64 -2.5 585,941 + HMPREF1078_RS12790 0.64 +0.3 585,941 + HMPREF1078_RS12790 0.64 -0.1 585,942 - HMPREF1078_RS12790 0.64 -0.9 585,942 - HMPREF1078_RS12790 0.64 -1.9 585,947 - HMPREF1078_RS12790 0.65 -1.1 585,971 + HMPREF1078_RS12790 0.70 -1.7 585,971 + HMPREF1078_RS12790 0.70 -4.0 585,972 - HMPREF1078_RS12790 0.71 -2.3 585,972 - HMPREF1078_RS12790 0.71 -1.4 586,068 - -0.3 586,068 - -1.7 586,077 + -1.6 586,115 - -1.1 586,115 - -0.8 586,118 + -2.4 586,119 - -0.8 586,119 - -2.7 586,124 - -1.1 586,124 - +1.9 586,137 - -1.4 586,147 + -0.7 586,159 - +0.3 586,159 - -2.3 586,161 - +1.5 586,173 + -1.1 586,234 - +0.6 586,237 + +0.6 586,238 - -1.4 586,263 + +1.5 586,264 - +1.7 586,307 + +0.9 586,308 - -0.2 586,308 - -1.1 586,308 - +1.2 586,308 - +3.3 586,308 - +0.2 586,343 - -0.6 586,343 - -1.1 586,411 + HMPREF1078_RS12795 0.18 -0.5 586,414 - HMPREF1078_RS12795 0.18 -0.4 586,414 - HMPREF1078_RS12795 0.18 -2.9 586,523 - HMPREF1078_RS12795 0.33 +0.9 586,541 - HMPREF1078_RS12795 0.36 -2.7 586,541 - HMPREF1078_RS12795 0.36 +0.4 586,549 - HMPREF1078_RS12795 0.37 +0.1 586,549 - HMPREF1078_RS12795 0.37 -0.7 586,549 - HMPREF1078_RS12795 0.37 -0.2 586,549 - HMPREF1078_RS12795 0.37 +0.0 586,565 - HMPREF1078_RS12795 0.39 +0.2 586,592 - HMPREF1078_RS12795 0.43 +0.5 586,592 - HMPREF1078_RS12795 0.43 -0.4 586,592 - HMPREF1078_RS12795 0.43 -0.9 586,600 + HMPREF1078_RS12795 0.44 -0.3 586,601 - HMPREF1078_RS12795 0.44 -0.3 586,601 - HMPREF1078_RS12795 0.44 -0.3 586,604 + HMPREF1078_RS12795 0.45 +0.6 586,604 + HMPREF1078_RS12795 0.45 +0.6 586,604 + HMPREF1078_RS12795 0.45 -1.3 586,605 - HMPREF1078_RS12795 0.45 -3.1 586,611 + HMPREF1078_RS12795 0.46 -0.2 586,637 - HMPREF1078_RS12795 0.49 -1.4 586,725 + HMPREF1078_RS12795 0.61 -0.9 586,725 + HMPREF1078_RS12795 0.61 -2.7 586,726 - HMPREF1078_RS12795 0.61 +0.9 586,737 + HMPREF1078_RS12795 0.63 -0.2 586,738 - HMPREF1078_RS12795 0.63 -0.9 586,765 - HMPREF1078_RS12795 0.67 -0.4 586,825 + HMPREF1078_RS12795 0.75 -0.6 586,904 - HMPREF1078_RS12795 0.86 -0.9 586,954 + -0.6 586,954 + -0.5 586,954 + -0.7 586,954 + -0.2 586,955 - -0.4 586,955 - -2.1 586,955 - -1.4 586,955 - -0.5 586,957 + +0.3 586,958 - +1.1 586,963 + +0.6 586,963 + +1.5 586,963 + -0.1 586,963 + +0.0 586,964 - +0.1 586,968 - -2.0 586,968 - -1.0 586,978 + -1.4 586,988 + -2.0 586,989 - -0.1 586,989 - +0.2 586,989 - -0.5 587,013 + -0.5 587,016 + -1.1 587,016 + +0.2 587,016 + +1.3 587,017 - -1.4 587,026 + +1.5 587,026 + -1.2 587,026 + -2.2 587,026 + -0.7 587,029 + +0.6 587,029 + -2.7 587,029 + -0.1 587,029 + -0.4 587,029 + +0.7 587,030 - +0.8 587,030 - -1.2 587,030 - +1.3
Or see this region's nucleotide sequence