Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS12600

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS12595 and HMPREF1078_RS12600 are separated by 174 nucleotidesHMPREF1078_RS12600 and HMPREF1078_RS12605 overlap by 4 nucleotides HMPREF1078_RS12595: HMPREF1078_RS12595 - inositol monophosphatase family protein, at 534,061 to 534,849 _RS12595 HMPREF1078_RS12600: HMPREF1078_RS12600 - translocation/assembly module TamB domain-containing protein, at 535,024 to 539,652 _RS12600 HMPREF1078_RS12605: HMPREF1078_RS12605 - BamA/TamA family outer membrane protein, at 539,649 to 541,952 _RS12605 Position (kb) 535 536 537 538 539 540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 534.039 kb on - strandat 534.060 kb on - strandat 534.062 kb on + strandat 534.082 kb on - strandat 534.088 kb on + strandat 534.088 kb on + strandat 534.254 kb on + strand, within HMPREF1078_RS12595at 534.254 kb on + strand, within HMPREF1078_RS12595at 534.303 kb on - strand, within HMPREF1078_RS12595at 534.308 kb on + strand, within HMPREF1078_RS12595at 534.309 kb on - strand, within HMPREF1078_RS12595at 534.400 kb on + strand, within HMPREF1078_RS12595at 534.401 kb on - strand, within HMPREF1078_RS12595at 534.441 kb on + strand, within HMPREF1078_RS12595at 534.442 kb on - strand, within HMPREF1078_RS12595at 534.442 kb on - strand, within HMPREF1078_RS12595at 534.442 kb on - strand, within HMPREF1078_RS12595at 534.485 kb on + strand, within HMPREF1078_RS12595at 534.485 kb on + strand, within HMPREF1078_RS12595at 534.487 kb on + strand, within HMPREF1078_RS12595at 534.528 kb on + strand, within HMPREF1078_RS12595at 534.540 kb on - strand, within HMPREF1078_RS12595at 534.549 kb on + strand, within HMPREF1078_RS12595at 534.549 kb on + strand, within HMPREF1078_RS12595at 534.549 kb on + strand, within HMPREF1078_RS12595at 534.557 kb on - strand, within HMPREF1078_RS12595at 534.558 kb on + strand, within HMPREF1078_RS12595at 534.560 kb on + strand, within HMPREF1078_RS12595at 534.561 kb on - strand, within HMPREF1078_RS12595at 534.599 kb on + strand, within HMPREF1078_RS12595at 534.599 kb on + strand, within HMPREF1078_RS12595at 534.599 kb on + strand, within HMPREF1078_RS12595at 534.599 kb on + strand, within HMPREF1078_RS12595at 534.599 kb on + strand, within HMPREF1078_RS12595at 534.600 kb on - strand, within HMPREF1078_RS12595at 534.600 kb on - strand, within HMPREF1078_RS12595at 534.600 kb on - strand, within HMPREF1078_RS12595at 534.707 kb on + strand, within HMPREF1078_RS12595at 534.708 kb on - strand, within HMPREF1078_RS12595at 534.708 kb on - strand, within HMPREF1078_RS12595at 534.717 kb on - strand, within HMPREF1078_RS12595at 534.717 kb on - strand, within HMPREF1078_RS12595at 534.717 kb on - strand, within HMPREF1078_RS12595at 534.717 kb on - strand, within HMPREF1078_RS12595at 534.800 kb on - strandat 534.863 kb on + strandat 534.875 kb on + strandat 534.876 kb on - strandat 534.881 kb on - strandat 534.897 kb on + strandat 534.900 kb on + strandat 534.991 kb on + strandat 535.015 kb on + strandat 535.055 kb on + strandat 535.056 kb on - strandat 535.073 kb on + strandat 535.074 kb on - strandat 535.101 kb on - strandat 535.101 kb on - strandat 535.101 kb on - strandat 535.102 kb on + strandat 535.103 kb on - strandat 535.105 kb on - strandat 535.106 kb on + strandat 535.106 kb on + strandat 535.107 kb on - strandat 535.107 kb on - strandat 535.107 kb on - strandat 535.190 kb on + strandat 535.190 kb on + strandat 535.191 kb on - strandat 535.238 kb on + strandat 535.357 kb on - strandat 535.392 kb on + strandat 535.393 kb on - strandat 535.413 kb on + strandat 535.425 kb on + strandat 535.425 kb on + strandat 535.427 kb on + strandat 535.428 kb on - strandat 535.627 kb on + strand, within HMPREF1078_RS12600at 535.628 kb on - strand, within HMPREF1078_RS12600at 535.681 kb on + strand, within HMPREF1078_RS12600at 535.735 kb on + strand, within HMPREF1078_RS12600at 535.737 kb on + strand, within HMPREF1078_RS12600at 535.738 kb on - strand, within HMPREF1078_RS12600at 535.770 kb on + strand, within HMPREF1078_RS12600at 535.770 kb on + strand, within HMPREF1078_RS12600at 535.771 kb on - strand, within HMPREF1078_RS12600at 535.772 kb on + strand, within HMPREF1078_RS12600at 535.773 kb on - strand, within HMPREF1078_RS12600at 535.954 kb on + strand, within HMPREF1078_RS12600at 535.954 kb on + strand, within HMPREF1078_RS12600at 536.004 kb on + strand, within HMPREF1078_RS12600at 536.026 kb on - strand, within HMPREF1078_RS12600at 536.060 kb on + strand, within HMPREF1078_RS12600at 536.060 kb on + strand, within HMPREF1078_RS12600at 536.060 kb on + strand, within HMPREF1078_RS12600at 536.566 kb on + strand, within HMPREF1078_RS12600at 536.600 kb on + strand, within HMPREF1078_RS12600at 536.651 kb on + strand, within HMPREF1078_RS12600at 536.727 kb on + strand, within HMPREF1078_RS12600at 536.728 kb on - strand, within HMPREF1078_RS12600at 536.893 kb on + strand, within HMPREF1078_RS12600at 536.894 kb on - strand, within HMPREF1078_RS12600at 536.894 kb on - strand, within HMPREF1078_RS12600at 536.894 kb on - strand, within HMPREF1078_RS12600at 536.934 kb on + strand, within HMPREF1078_RS12600at 537.099 kb on - strand, within HMPREF1078_RS12600at 537.208 kb on + strand, within HMPREF1078_RS12600at 537.211 kb on + strand, within HMPREF1078_RS12600at 537.212 kb on - strand, within HMPREF1078_RS12600at 537.574 kb on - strand, within HMPREF1078_RS12600at 537.598 kb on + strand, within HMPREF1078_RS12600at 537.598 kb on - strand, within HMPREF1078_RS12600at 537.737 kb on + strand, within HMPREF1078_RS12600at 537.805 kb on + strand, within HMPREF1078_RS12600at 537.849 kb on + strand, within HMPREF1078_RS12600at 537.849 kb on + strand, within HMPREF1078_RS12600at 537.866 kb on - strand, within HMPREF1078_RS12600at 538.058 kb on + strand, within HMPREF1078_RS12600at 538.059 kb on - strand, within HMPREF1078_RS12600at 538.156 kb on + strand, within HMPREF1078_RS12600at 538.181 kb on + strand, within HMPREF1078_RS12600at 538.183 kb on + strand, within HMPREF1078_RS12600at 538.183 kb on + strand, within HMPREF1078_RS12600at 538.184 kb on - strand, within HMPREF1078_RS12600at 538.265 kb on - strand, within HMPREF1078_RS12600at 538.265 kb on - strand, within HMPREF1078_RS12600at 538.274 kb on - strand, within HMPREF1078_RS12600at 538.274 kb on - strand, within HMPREF1078_RS12600at 538.396 kb on - strand, within HMPREF1078_RS12600at 538.396 kb on - strand, within HMPREF1078_RS12600at 538.411 kb on + strand, within HMPREF1078_RS12600at 538.411 kb on + strand, within HMPREF1078_RS12600at 538.411 kb on + strand, within HMPREF1078_RS12600at 538.484 kb on + strand, within HMPREF1078_RS12600at 538.484 kb on + strand, within HMPREF1078_RS12600at 538.513 kb on + strand, within HMPREF1078_RS12600at 538.587 kb on + strand, within HMPREF1078_RS12600at 538.693 kb on - strand, within HMPREF1078_RS12600at 538.693 kb on - strand, within HMPREF1078_RS12600at 538.755 kb on + strand, within HMPREF1078_RS12600at 538.755 kb on + strand, within HMPREF1078_RS12600at 538.756 kb on - strand, within HMPREF1078_RS12600at 539.028 kb on + strand, within HMPREF1078_RS12600at 539.132 kb on - strand, within HMPREF1078_RS12600at 539.364 kb on + strandat 539.364 kb on + strandat 539.365 kb on - strandat 539.369 kb on + strandat 539.370 kb on - strandat 539.504 kb on - strandat 539.595 kb on + strandat 539.665 kb on - strandat 539.674 kb on - strandat 539.737 kb on + strandat 539.743 kb on - strandat 539.864 kb on + strandat 539.871 kb on - strandat 539.899 kb on - strand, within HMPREF1078_RS12605at 539.941 kb on + strand, within HMPREF1078_RS12605at 540.012 kb on + strand, within HMPREF1078_RS12605at 540.013 kb on - strand, within HMPREF1078_RS12605at 540.036 kb on + strand, within HMPREF1078_RS12605at 540.105 kb on + strand, within HMPREF1078_RS12605at 540.129 kb on + strand, within HMPREF1078_RS12605at 540.129 kb on + strand, within HMPREF1078_RS12605at 540.130 kb on - strand, within HMPREF1078_RS12605at 540.135 kb on + strand, within HMPREF1078_RS12605at 540.135 kb on + strand, within HMPREF1078_RS12605at 540.135 kb on + strand, within HMPREF1078_RS12605at 540.136 kb on - strand, within HMPREF1078_RS12605at 540.136 kb on - strand, within HMPREF1078_RS12605at 540.150 kb on + strand, within HMPREF1078_RS12605at 540.150 kb on + strand, within HMPREF1078_RS12605at 540.266 kb on - strand, within HMPREF1078_RS12605at 540.298 kb on - strand, within HMPREF1078_RS12605at 540.322 kb on - strand, within HMPREF1078_RS12605at 540.332 kb on + strand, within HMPREF1078_RS12605at 540.366 kb on - strand, within HMPREF1078_RS12605at 540.642 kb on + strand, within HMPREF1078_RS12605at 540.643 kb on - strand, within HMPREF1078_RS12605

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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534,039 - +0.6
534,060 - +0.7
534,062 + +0.6
534,082 - +0.2
534,088 + -0.4
534,088 + -0.2
534,254 + HMPREF1078_RS12595 0.24 +1.7
534,254 + HMPREF1078_RS12595 0.24 +0.9
534,303 - HMPREF1078_RS12595 0.31 +0.5
534,308 + HMPREF1078_RS12595 0.31 -0.2
534,309 - HMPREF1078_RS12595 0.31 +0.4
534,400 + HMPREF1078_RS12595 0.43 -0.6
534,401 - HMPREF1078_RS12595 0.43 -0.4
534,441 + HMPREF1078_RS12595 0.48 -0.3
534,442 - HMPREF1078_RS12595 0.48 -0.6
534,442 - HMPREF1078_RS12595 0.48 -0.7
534,442 - HMPREF1078_RS12595 0.48 +0.1
534,485 + HMPREF1078_RS12595 0.54 -1.2
534,485 + HMPREF1078_RS12595 0.54 -0.1
534,487 + HMPREF1078_RS12595 0.54 -0.3
534,528 + HMPREF1078_RS12595 0.59 -0.8
534,540 - HMPREF1078_RS12595 0.61 +0.5
534,549 + HMPREF1078_RS12595 0.62 -0.1
534,549 + HMPREF1078_RS12595 0.62 +0.2
534,549 + HMPREF1078_RS12595 0.62 -1.1
534,557 - HMPREF1078_RS12595 0.63 -0.4
534,558 + HMPREF1078_RS12595 0.63 +0.7
534,560 + HMPREF1078_RS12595 0.63 -0.2
534,561 - HMPREF1078_RS12595 0.63 -1.6
534,599 + HMPREF1078_RS12595 0.68 +0.9
534,599 + HMPREF1078_RS12595 0.68 +0.2
534,599 + HMPREF1078_RS12595 0.68 +2.5
534,599 + HMPREF1078_RS12595 0.68 +0.9
534,599 + HMPREF1078_RS12595 0.68 -0.1
534,600 - HMPREF1078_RS12595 0.68 +0.3
534,600 - HMPREF1078_RS12595 0.68 -1.1
534,600 - HMPREF1078_RS12595 0.68 +0.9
534,707 + HMPREF1078_RS12595 0.82 +0.9
534,708 - HMPREF1078_RS12595 0.82 +1.5
534,708 - HMPREF1078_RS12595 0.82 -1.7
534,717 - HMPREF1078_RS12595 0.83 +3.6
534,717 - HMPREF1078_RS12595 0.83 +0.5
534,717 - HMPREF1078_RS12595 0.83 -1.3
534,717 - HMPREF1078_RS12595 0.83 +0.7
534,800 - -0.5
534,863 + +0.3
534,875 + -1.7
534,876 - +0.6
534,881 - +0.2
534,897 + -0.7
534,900 + +0.9
534,991 + -1.4
535,015 + +3.5
535,055 + +0.2
535,056 - -0.4
535,073 + -1.9
535,074 - -3.3
535,101 - -1.4
535,101 - -0.1
535,101 - -1.7
535,102 + -2.6
535,103 - -1.1
535,105 - -1.4
535,106 + -0.5
535,106 + -1.9
535,107 - -0.5
535,107 - -0.9
535,107 - -1.7
535,190 + -2.8
535,190 + +0.9
535,191 - -2.5
535,238 + -1.2
535,357 - -0.9
535,392 + +0.4
535,393 - -1.4
535,413 + -0.9
535,425 + -2.1
535,425 + -1.9
535,427 + -2.1
535,428 - -0.9
535,627 + HMPREF1078_RS12600 0.13 -0.7
535,628 - HMPREF1078_RS12600 0.13 -0.1
535,681 + HMPREF1078_RS12600 0.14 +0.9
535,735 + HMPREF1078_RS12600 0.15 -2.7
535,737 + HMPREF1078_RS12600 0.15 -4.2
535,738 - HMPREF1078_RS12600 0.15 -1.7
535,770 + HMPREF1078_RS12600 0.16 -2.8
535,770 + HMPREF1078_RS12600 0.16 -0.2
535,771 - HMPREF1078_RS12600 0.16 -0.1
535,772 + HMPREF1078_RS12600 0.16 +1.9
535,773 - HMPREF1078_RS12600 0.16 -0.1
535,954 + HMPREF1078_RS12600 0.20 -1.1
535,954 + HMPREF1078_RS12600 0.20 -1.9
536,004 + HMPREF1078_RS12600 0.21 -3.6
536,026 - HMPREF1078_RS12600 0.22 -1.1
536,060 + HMPREF1078_RS12600 0.22 +0.3
536,060 + HMPREF1078_RS12600 0.22 -0.9
536,060 + HMPREF1078_RS12600 0.22 -1.4
536,566 + HMPREF1078_RS12600 0.33 -1.5
536,600 + HMPREF1078_RS12600 0.34 -1.4
536,651 + HMPREF1078_RS12600 0.35 -0.7
536,727 + HMPREF1078_RS12600 0.37 -0.9
536,728 - HMPREF1078_RS12600 0.37 +0.2
536,893 + HMPREF1078_RS12600 0.40 -0.3
536,894 - HMPREF1078_RS12600 0.40 -1.4
536,894 - HMPREF1078_RS12600 0.40 -2.5
536,894 - HMPREF1078_RS12600 0.40 -1.7
536,934 + HMPREF1078_RS12600 0.41 -1.1
537,099 - HMPREF1078_RS12600 0.45 -1.4
537,208 + HMPREF1078_RS12600 0.47 -1.5
537,211 + HMPREF1078_RS12600 0.47 -2.9
537,212 - HMPREF1078_RS12600 0.47 -2.9
537,574 - HMPREF1078_RS12600 0.55 -1.7
537,598 + HMPREF1078_RS12600 0.56 -2.7
537,598 - HMPREF1078_RS12600 0.56 -0.1
537,737 + HMPREF1078_RS12600 0.59 -2.2
537,805 + HMPREF1078_RS12600 0.60 -2.2
537,849 + HMPREF1078_RS12600 0.61 -2.3
537,849 + HMPREF1078_RS12600 0.61 -1.2
537,866 - HMPREF1078_RS12600 0.61 -1.1
538,058 + HMPREF1078_RS12600 0.66 -0.9
538,059 - HMPREF1078_RS12600 0.66 -1.9
538,156 + HMPREF1078_RS12600 0.68 -2.5
538,181 + HMPREF1078_RS12600 0.68 -2.8
538,183 + HMPREF1078_RS12600 0.68 +0.8
538,183 + HMPREF1078_RS12600 0.68 -1.3
538,184 - HMPREF1078_RS12600 0.68 -0.1
538,265 - HMPREF1078_RS12600 0.70 -2.4
538,265 - HMPREF1078_RS12600 0.70 +0.9
538,274 - HMPREF1078_RS12600 0.70 +0.5
538,274 - HMPREF1078_RS12600 0.70 -0.7
538,396 - HMPREF1078_RS12600 0.73 -1.4
538,396 - HMPREF1078_RS12600 0.73 -0.3
538,411 + HMPREF1078_RS12600 0.73 -1.1
538,411 + HMPREF1078_RS12600 0.73 -2.2
538,411 + HMPREF1078_RS12600 0.73 -2.1
538,484 + HMPREF1078_RS12600 0.75 -2.4
538,484 + HMPREF1078_RS12600 0.75 -3.3
538,513 + HMPREF1078_RS12600 0.75 -0.7
538,587 + HMPREF1078_RS12600 0.77 +0.2
538,693 - HMPREF1078_RS12600 0.79 +0.9
538,693 - HMPREF1078_RS12600 0.79 +0.3
538,755 + HMPREF1078_RS12600 0.81 -3.0
538,755 + HMPREF1078_RS12600 0.81 -2.1
538,756 - HMPREF1078_RS12600 0.81 -2.2
539,028 + HMPREF1078_RS12600 0.86 -1.7
539,132 - HMPREF1078_RS12600 0.89 -0.7
539,364 + -0.7
539,364 + -3.7
539,365 - -1.9
539,369 + -3.2
539,370 - -0.8
539,504 - -2.6
539,595 + +0.6
539,665 - -3.9
539,674 - -1.9
539,737 + -1.7
539,743 - -0.9
539,864 + -1.7
539,871 - -0.7
539,899 - HMPREF1078_RS12605 0.11 +0.3
539,941 + HMPREF1078_RS12605 0.13 +0.2
540,012 + HMPREF1078_RS12605 0.16 -1.4
540,013 - HMPREF1078_RS12605 0.16 -1.5
540,036 + HMPREF1078_RS12605 0.17 -2.6
540,105 + HMPREF1078_RS12605 0.20 -1.5
540,129 + HMPREF1078_RS12605 0.21 -2.7
540,129 + HMPREF1078_RS12605 0.21 +0.9
540,130 - HMPREF1078_RS12605 0.21 -3.8
540,135 + HMPREF1078_RS12605 0.21 -1.7
540,135 + HMPREF1078_RS12605 0.21 -2.5
540,135 + HMPREF1078_RS12605 0.21 -2.2
540,136 - HMPREF1078_RS12605 0.21 -3.5
540,136 - HMPREF1078_RS12605 0.21 -2.4
540,150 + HMPREF1078_RS12605 0.22 -1.0
540,150 + HMPREF1078_RS12605 0.22 +0.9
540,266 - HMPREF1078_RS12605 0.27 -1.2
540,298 - HMPREF1078_RS12605 0.28 -1.2
540,322 - HMPREF1078_RS12605 0.29 -1.9
540,332 + HMPREF1078_RS12605 0.30 -0.1
540,366 - HMPREF1078_RS12605 0.31 -2.0
540,642 + HMPREF1078_RS12605 0.43 -2.5
540,643 - HMPREF1078_RS12605 0.43 -1.2

Or see this region's nucleotide sequence