Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12110 and HMPREF1078_RS12115 are separated by 68 nucleotides HMPREF1078_RS12115 and HMPREF1078_RS12120 overlap by 6 nucleotides HMPREF1078_RS12120 and HMPREF1078_RS12125 are separated by 80 nucleotides
HMPREF1078_RS12110: HMPREF1078_RS12110 - DNA polymerase III subunit alpha, at 388,356 to 392,156
_RS12110
HMPREF1078_RS12115: HMPREF1078_RS12115 - thioredoxin, at 392,225 to 392,539
_RS12115
HMPREF1078_RS12120: HMPREF1078_RS12120 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 392,534 to 393,214
_RS12120
HMPREF1078_RS12125: HMPREF1078_RS12125 - TonB-dependent receptor, at 393,295 to 395,685
_RS12125
Position (kb) 392
393 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 392.157 kb on + strand at 392.158 kb on - strand at 392.158 kb on - strand at 392.163 kb on + strand at 392.164 kb on - strand at 392.164 kb on - strand at 392.168 kb on + strand at 392.204 kb on - strand at 392.204 kb on - strand at 392.205 kb on + strand at 392.205 kb on + strand at 392.206 kb on - strand at 392.208 kb on - strand at 392.215 kb on - strand at 392.219 kb on - strand at 392.224 kb on + strand at 392.225 kb on - strand at 392.275 kb on + strand, within HMPREF1078_RS12115 at 392.276 kb on - strand, within HMPREF1078_RS12115 at 392.360 kb on + strand, within HMPREF1078_RS12115 at 392.394 kb on + strand, within HMPREF1078_RS12115 at 392.394 kb on + strand, within HMPREF1078_RS12115 at 392.394 kb on + strand, within HMPREF1078_RS12115 at 392.395 kb on - strand, within HMPREF1078_RS12115 at 392.395 kb on - strand, within HMPREF1078_RS12115 at 392.395 kb on - strand, within HMPREF1078_RS12115 at 392.472 kb on + strand, within HMPREF1078_RS12115 at 392.472 kb on + strand, within HMPREF1078_RS12115 at 392.473 kb on - strand, within HMPREF1078_RS12115 at 392.475 kb on + strand, within HMPREF1078_RS12115 at 392.475 kb on + strand, within HMPREF1078_RS12115 at 392.475 kb on + strand, within HMPREF1078_RS12115 at 392.476 kb on - strand, within HMPREF1078_RS12115 at 392.476 kb on - strand, within HMPREF1078_RS12115 at 392.479 kb on + strand, within HMPREF1078_RS12115 at 392.488 kb on - strand, within HMPREF1078_RS12115 at 392.488 kb on - strand, within HMPREF1078_RS12115 at 392.488 kb on - strand, within HMPREF1078_RS12115 at 392.500 kb on + strand, within HMPREF1078_RS12115 at 392.514 kb on + strand at 392.518 kb on + strand at 392.523 kb on + strand at 392.524 kb on - strand at 392.537 kb on + strand at 392.538 kb on - strand at 392.542 kb on + strand at 392.543 kb on - strand at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.617 kb on + strand, within HMPREF1078_RS12120 at 392.618 kb on - strand, within HMPREF1078_RS12120 at 392.618 kb on - strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.643 kb on + strand, within HMPREF1078_RS12120 at 392.644 kb on - strand, within HMPREF1078_RS12120 at 392.644 kb on - strand, within HMPREF1078_RS12120 at 392.679 kb on + strand, within HMPREF1078_RS12120 at 392.679 kb on + strand, within HMPREF1078_RS12120 at 392.679 kb on + strand, within HMPREF1078_RS12120 at 392.680 kb on - strand, within HMPREF1078_RS12120 at 392.745 kb on + strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.780 kb on - strand, within HMPREF1078_RS12120 at 392.795 kb on + strand, within HMPREF1078_RS12120 at 392.796 kb on - strand, within HMPREF1078_RS12120 at 392.952 kb on + strand, within HMPREF1078_RS12120 at 392.953 kb on - strand, within HMPREF1078_RS12120 at 393.065 kb on + strand, within HMPREF1078_RS12120 at 393.065 kb on + strand, within HMPREF1078_RS12120 at 393.124 kb on - strand, within HMPREF1078_RS12120 at 393.154 kb on + strand at 393.193 kb on + strand at 393.193 kb on + strand at 393.216 kb on + strand at 393.217 kb on - strand at 393.217 kb on - strand at 393.223 kb on - strand at 393.224 kb on + strand at 393.225 kb on - strand at 393.228 kb on - strand at 393.263 kb on - strand at 393.264 kb on + strand at 393.280 kb on + strand at 393.281 kb on - strand at 393.321 kb on - strand at 393.347 kb on + strand at 393.367 kb on + strand at 393.367 kb on + strand at 393.367 kb on + strand at 393.368 kb on - strand at 393.368 kb on - strand at 393.386 kb on + strand at 393.387 kb on - strand at 393.446 kb on + strand at 393.447 kb on - strand at 393.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 392,157 + +1.2 392,158 - -0.0 392,158 - -0.7 392,163 + +0.3 392,164 - -3.2 392,164 - -2.2 392,168 + +0.7 392,204 - -3.4 392,204 - -3.2 392,205 + -0.5 392,205 + +0.1 392,206 - -4.2 392,208 - -2.4 392,215 - -3.8 392,219 - -4.1 392,224 + -1.8 392,225 - -3.5 392,275 + HMPREF1078_RS12115 0.16 -3.2 392,276 - HMPREF1078_RS12115 0.16 -4.0 392,360 + HMPREF1078_RS12115 0.43 -2.5 392,394 + HMPREF1078_RS12115 0.54 -0.1 392,394 + HMPREF1078_RS12115 0.54 -3.9 392,394 + HMPREF1078_RS12115 0.54 -3.2 392,395 - HMPREF1078_RS12115 0.54 -2.8 392,395 - HMPREF1078_RS12115 0.54 -0.7 392,395 - HMPREF1078_RS12115 0.54 -0.7 392,472 + HMPREF1078_RS12115 0.78 -4.5 392,472 + HMPREF1078_RS12115 0.78 -3.3 392,473 - HMPREF1078_RS12115 0.79 -3.8 392,475 + HMPREF1078_RS12115 0.79 -1.9 392,475 + HMPREF1078_RS12115 0.79 -3.0 392,475 + HMPREF1078_RS12115 0.79 -3.7 392,476 - HMPREF1078_RS12115 0.80 -3.5 392,476 - HMPREF1078_RS12115 0.80 -2.7 392,479 + HMPREF1078_RS12115 0.81 -1.7 392,488 - HMPREF1078_RS12115 0.83 -3.5 392,488 - HMPREF1078_RS12115 0.83 -2.4 392,488 - HMPREF1078_RS12115 0.83 -3.2 392,500 + HMPREF1078_RS12115 0.87 -3.1 392,514 + -3.2 392,518 + -4.3 392,523 + -0.2 392,524 - -4.0 392,537 + +0.5 392,538 - -0.7 392,542 + +0.9 392,543 - +0.0 392,617 + HMPREF1078_RS12120 0.12 -0.9 392,617 + HMPREF1078_RS12120 0.12 +0.0 392,617 + HMPREF1078_RS12120 0.12 -1.5 392,617 + HMPREF1078_RS12120 0.12 +0.2 392,618 - HMPREF1078_RS12120 0.12 +0.2 392,618 - HMPREF1078_RS12120 0.12 +0.9 392,643 + HMPREF1078_RS12120 0.16 +1.3 392,643 + HMPREF1078_RS12120 0.16 +0.4 392,643 + HMPREF1078_RS12120 0.16 +1.9 392,643 + HMPREF1078_RS12120 0.16 -2.0 392,643 + HMPREF1078_RS12120 0.16 +0.3 392,643 + HMPREF1078_RS12120 0.16 -1.2 392,644 - HMPREF1078_RS12120 0.16 +0.7 392,644 - HMPREF1078_RS12120 0.16 -0.1 392,679 + HMPREF1078_RS12120 0.21 -0.9 392,679 + HMPREF1078_RS12120 0.21 +0.6 392,679 + HMPREF1078_RS12120 0.21 +1.5 392,680 - HMPREF1078_RS12120 0.21 -0.7 392,745 + HMPREF1078_RS12120 0.31 -0.3 392,780 - HMPREF1078_RS12120 0.36 -0.6 392,780 - HMPREF1078_RS12120 0.36 -2.7 392,780 - HMPREF1078_RS12120 0.36 -0.2 392,780 - HMPREF1078_RS12120 0.36 +2.0 392,795 + HMPREF1078_RS12120 0.38 +0.1 392,796 - HMPREF1078_RS12120 0.38 -0.4 392,952 + HMPREF1078_RS12120 0.61 +0.9 392,953 - HMPREF1078_RS12120 0.62 +0.2 393,065 + HMPREF1078_RS12120 0.78 +1.2 393,065 + HMPREF1078_RS12120 0.78 +0.3 393,124 - HMPREF1078_RS12120 0.87 +0.4 393,154 + -0.0 393,193 + +1.2 393,193 + +0.3 393,216 + +1.4 393,217 - -1.1 393,217 - +1.9 393,223 - +1.5 393,224 + +0.6 393,225 - +0.3 393,228 - -1.2 393,263 - +0.4 393,264 + +1.6 393,280 + -0.2 393,281 - -0.6 393,321 - -0.7 393,347 + -0.1 393,367 + -1.7 393,367 + +0.6 393,367 + +0.7 393,368 - +0.8 393,368 - -0.1 393,386 + +1.1 393,387 - +0.9 393,446 + -0.3 393,447 - +0.8 393,447 - +1.1
Or see this region's nucleotide sequence