Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11970 and HMPREF1078_RS11975 are separated by 3 nucleotides HMPREF1078_RS11975 and HMPREF1078_RS11980 overlap by 17 nucleotides HMPREF1078_RS11980 and HMPREF1078_RS11985 are separated by 173 nucleotides HMPREF1078_RS11985 and HMPREF1078_RS11990 are separated by 101 nucleotides
HMPREF1078_RS11970: HMPREF1078_RS11970 - TonB-dependent receptor plug domain-containing protein, at 353,539 to 355,746
_RS11970
HMPREF1078_RS11975: HMPREF1078_RS11975 - nicotinamide riboside transporter PnuC, at 355,750 to 356,364
_RS11975
HMPREF1078_RS11980: HMPREF1078_RS11980 - thiamine diphosphokinase, at 356,348 to 356,986
_RS11980
HMPREF1078_RS11985: HMPREF1078_RS11985 - hypothetical protein, at 357,160 to 357,504
_RS11985
HMPREF1078_RS11990: HMPREF1078_RS11990 - DUF3868 domain-containing protein, at 357,606 to 359,072
_RS11990
Position (kb) 356
357 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 355.490 kb on - strand, within HMPREF1078_RS11970 at 355.532 kb on - strand at 355.578 kb on + strand at 355.686 kb on - strand at 355.694 kb on - strand at 355.796 kb on - strand at 355.811 kb on + strand at 355.811 kb on + strand at 355.861 kb on + strand, within HMPREF1078_RS11975 at 355.862 kb on - strand, within HMPREF1078_RS11975 at 355.890 kb on - strand, within HMPREF1078_RS11975 at 355.891 kb on + strand, within HMPREF1078_RS11975 at 355.918 kb on + strand, within HMPREF1078_RS11975 at 355.923 kb on - strand, within HMPREF1078_RS11975 at 355.923 kb on - strand, within HMPREF1078_RS11975 at 355.936 kb on + strand, within HMPREF1078_RS11975 at 355.937 kb on - strand, within HMPREF1078_RS11975 at 355.994 kb on + strand, within HMPREF1078_RS11975 at 356.031 kb on + strand, within HMPREF1078_RS11975 at 356.093 kb on - strand, within HMPREF1078_RS11975 at 356.095 kb on + strand, within HMPREF1078_RS11975 at 356.095 kb on + strand, within HMPREF1078_RS11975 at 356.096 kb on - strand, within HMPREF1078_RS11975 at 356.145 kb on + strand, within HMPREF1078_RS11975 at 356.165 kb on + strand, within HMPREF1078_RS11975 at 356.239 kb on + strand, within HMPREF1078_RS11975 at 356.281 kb on + strand, within HMPREF1078_RS11975 at 356.318 kb on - strand at 356.340 kb on - strand at 356.352 kb on + strand at 356.353 kb on - strand at 356.362 kb on + strand at 356.370 kb on + strand at 356.371 kb on - strand at 356.407 kb on - strand at 356.543 kb on + strand, within HMPREF1078_RS11980 at 356.544 kb on - strand, within HMPREF1078_RS11980 at 356.560 kb on + strand, within HMPREF1078_RS11980 at 356.565 kb on + strand, within HMPREF1078_RS11980 at 356.581 kb on - strand, within HMPREF1078_RS11980 at 356.641 kb on - strand, within HMPREF1078_RS11980 at 356.643 kb on + strand, within HMPREF1078_RS11980 at 356.644 kb on - strand, within HMPREF1078_RS11980 at 356.671 kb on + strand, within HMPREF1078_RS11980 at 356.671 kb on + strand, within HMPREF1078_RS11980 at 356.671 kb on + strand, within HMPREF1078_RS11980 at 356.677 kb on - strand, within HMPREF1078_RS11980 at 356.683 kb on + strand, within HMPREF1078_RS11980 at 356.725 kb on - strand, within HMPREF1078_RS11980 at 356.785 kb on + strand, within HMPREF1078_RS11980 at 356.959 kb on - strand at 356.984 kb on + strand at 356.984 kb on + strand at 356.985 kb on - strand at 357.005 kb on - strand at 357.019 kb on - strand at 357.030 kb on - strand at 357.085 kb on + strand at 357.086 kb on - strand at 357.106 kb on + strand at 357.110 kb on - strand at 357.134 kb on + strand at 357.174 kb on + strand at 357.214 kb on - strand, within HMPREF1078_RS11985 at 357.214 kb on - strand, within HMPREF1078_RS11985 at 357.222 kb on - strand, within HMPREF1078_RS11985 at 357.358 kb on + strand, within HMPREF1078_RS11985 at 357.362 kb on - strand, within HMPREF1078_RS11985 at 357.390 kb on - strand, within HMPREF1078_RS11985 at 357.390 kb on - strand, within HMPREF1078_RS11985 at 357.390 kb on - strand, within HMPREF1078_RS11985 at 357.393 kb on - strand, within HMPREF1078_RS11985 at 357.393 kb on - strand, within HMPREF1078_RS11985 at 357.407 kb on + strand, within HMPREF1078_RS11985 at 357.434 kb on + strand, within HMPREF1078_RS11985 at 357.436 kb on + strand, within HMPREF1078_RS11985 at 357.436 kb on + strand, within HMPREF1078_RS11985 at 357.461 kb on - strand, within HMPREF1078_RS11985 at 357.461 kb on - strand, within HMPREF1078_RS11985 at 357.461 kb on - strand, within HMPREF1078_RS11985 at 357.493 kb on + strand at 357.496 kb on - strand at 357.496 kb on - strand at 357.496 kb on - strand at 357.534 kb on + strand at 357.547 kb on + strand at 357.549 kb on + strand at 357.553 kb on - strand at 357.590 kb on - strand at 357.605 kb on - strand at 357.877 kb on + strand, within HMPREF1078_RS11990 at 357.909 kb on - strand, within HMPREF1078_RS11990
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 355,490 - HMPREF1078_RS11970 0.88 -1.9 355,532 - -2.6 355,578 + +0.9 355,686 - -3.8 355,694 - -2.2 355,796 - +0.9 355,811 + -0.9 355,811 + -0.7 355,861 + HMPREF1078_RS11975 0.18 -0.9 355,862 - HMPREF1078_RS11975 0.18 -3.2 355,890 - HMPREF1078_RS11975 0.23 -1.3 355,891 + HMPREF1078_RS11975 0.23 +0.2 355,918 + HMPREF1078_RS11975 0.27 +0.0 355,923 - HMPREF1078_RS11975 0.28 -1.3 355,923 - HMPREF1078_RS11975 0.28 -3.1 355,936 + HMPREF1078_RS11975 0.30 -0.7 355,937 - HMPREF1078_RS11975 0.30 -0.1 355,994 + HMPREF1078_RS11975 0.40 +0.3 356,031 + HMPREF1078_RS11975 0.46 +0.6 356,093 - HMPREF1078_RS11975 0.56 -0.1 356,095 + HMPREF1078_RS11975 0.56 -2.4 356,095 + HMPREF1078_RS11975 0.56 +0.4 356,096 - HMPREF1078_RS11975 0.56 -0.8 356,145 + HMPREF1078_RS11975 0.64 -0.8 356,165 + HMPREF1078_RS11975 0.67 +0.9 356,239 + HMPREF1078_RS11975 0.80 -1.0 356,281 + HMPREF1078_RS11975 0.86 -0.4 356,318 - -3.0 356,340 - -1.1 356,352 + -1.4 356,353 - -3.2 356,362 + -2.3 356,370 + -2.7 356,371 - -2.1 356,407 - -4.0 356,543 + HMPREF1078_RS11980 0.31 -1.1 356,544 - HMPREF1078_RS11980 0.31 -0.7 356,560 + HMPREF1078_RS11980 0.33 -0.1 356,565 + HMPREF1078_RS11980 0.34 -2.8 356,581 - HMPREF1078_RS11980 0.36 -3.4 356,641 - HMPREF1078_RS11980 0.46 -1.1 356,643 + HMPREF1078_RS11980 0.46 -1.4 356,644 - HMPREF1078_RS11980 0.46 -1.7 356,671 + HMPREF1078_RS11980 0.51 -2.7 356,671 + HMPREF1078_RS11980 0.51 -3.6 356,671 + HMPREF1078_RS11980 0.51 -1.7 356,677 - HMPREF1078_RS11980 0.51 -0.7 356,683 + HMPREF1078_RS11980 0.52 -0.1 356,725 - HMPREF1078_RS11980 0.59 -1.9 356,785 + HMPREF1078_RS11980 0.68 -1.4 356,959 - -3.7 356,984 + -0.3 356,984 + +1.0 356,985 - +0.9 357,005 - +0.9 357,019 - -1.0 357,030 - -0.5 357,085 + +1.3 357,086 - +1.8 357,106 + -0.0 357,110 - -0.3 357,134 + +0.1 357,174 + +1.4 357,214 - HMPREF1078_RS11985 0.16 -0.7 357,214 - HMPREF1078_RS11985 0.16 -2.0 357,222 - HMPREF1078_RS11985 0.18 -0.2 357,358 + HMPREF1078_RS11985 0.57 -0.9 357,362 - HMPREF1078_RS11985 0.59 +1.9 357,390 - HMPREF1078_RS11985 0.67 -0.0 357,390 - HMPREF1078_RS11985 0.67 -1.2 357,390 - HMPREF1078_RS11985 0.67 +1.6 357,393 - HMPREF1078_RS11985 0.68 -1.9 357,393 - HMPREF1078_RS11985 0.68 -2.1 357,407 + HMPREF1078_RS11985 0.72 +2.1 357,434 + HMPREF1078_RS11985 0.79 +2.5 357,436 + HMPREF1078_RS11985 0.80 +1.7 357,436 + HMPREF1078_RS11985 0.80 -0.4 357,461 - HMPREF1078_RS11985 0.87 -0.1 357,461 - HMPREF1078_RS11985 0.87 +2.5 357,461 - HMPREF1078_RS11985 0.87 +1.4 357,493 + -0.1 357,496 - -1.4 357,496 - -0.5 357,496 - -0.9 357,534 + -0.2 357,547 + -0.2 357,549 + -1.7 357,553 - -1.0 357,590 - -0.1 357,605 - -2.1 357,877 + HMPREF1078_RS11990 0.18 +1.9 357,909 - HMPREF1078_RS11990 0.21 +0.5
Or see this region's nucleotide sequence