Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11655

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS11645 and HMPREF1078_RS11650 are separated by 68 nucleotidesHMPREF1078_RS11650 and HMPREF1078_RS11655 are separated by 74 nucleotidesHMPREF1078_RS11655 and HMPREF1078_RS11660 are separated by 36 nucleotidesHMPREF1078_RS11660 and HMPREF1078_RS11665 are separated by 95 nucleotides HMPREF1078_RS11645: HMPREF1078_RS11645 - tetratricopeptide repeat protein, at 273,269 to 273,532 _RS11645 HMPREF1078_RS11650: HMPREF1078_RS11650 - glucosamine-6-phosphate deaminase, at 273,601 to 274,413 _RS11650 HMPREF1078_RS11655: HMPREF1078_RS11655 - FprA family A-type flavoprotein, at 274,488 to 275,684 _RS11655 HMPREF1078_RS11660: HMPREF1078_RS11660 - prolipoprotein diacylglyceryl transferase, at 275,721 to 276,554 _RS11660 HMPREF1078_RS11665: HMPREF1078_RS11665 - diaminopimelate dehydrogenase, at 276,650 to 277,546 _RS11665 Position (kb) 274 275 276Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 273.530 kb on + strandat 273.547 kb on - strandat 273.571 kb on + strandat 273.585 kb on + strandat 273.586 kb on - strandat 273.591 kb on + strandat 273.594 kb on + strandat 273.610 kb on + strandat 274.451 kb on - strandat 274.546 kb on + strandat 274.547 kb on - strandat 274.547 kb on - strandat 274.676 kb on - strand, within HMPREF1078_RS11655at 274.751 kb on - strand, within HMPREF1078_RS11655at 274.751 kb on - strand, within HMPREF1078_RS11655at 274.751 kb on - strand, within HMPREF1078_RS11655at 274.778 kb on + strand, within HMPREF1078_RS11655at 274.778 kb on + strand, within HMPREF1078_RS11655at 274.778 kb on + strand, within HMPREF1078_RS11655at 274.790 kb on + strand, within HMPREF1078_RS11655at 274.791 kb on - strand, within HMPREF1078_RS11655at 274.805 kb on - strand, within HMPREF1078_RS11655at 274.805 kb on - strand, within HMPREF1078_RS11655at 274.906 kb on + strand, within HMPREF1078_RS11655at 274.907 kb on - strand, within HMPREF1078_RS11655at 274.958 kb on + strand, within HMPREF1078_RS11655at 274.958 kb on + strand, within HMPREF1078_RS11655at 274.958 kb on + strand, within HMPREF1078_RS11655at 274.966 kb on + strand, within HMPREF1078_RS11655at 274.966 kb on + strand, within HMPREF1078_RS11655at 274.967 kb on - strand, within HMPREF1078_RS11655at 274.967 kb on - strand, within HMPREF1078_RS11655at 274.990 kb on + strand, within HMPREF1078_RS11655at 275.080 kb on + strand, within HMPREF1078_RS11655at 275.093 kb on + strand, within HMPREF1078_RS11655at 275.094 kb on - strand, within HMPREF1078_RS11655at 275.101 kb on + strand, within HMPREF1078_RS11655at 275.105 kb on - strand, within HMPREF1078_RS11655at 275.126 kb on - strand, within HMPREF1078_RS11655at 275.177 kb on - strand, within HMPREF1078_RS11655at 275.177 kb on - strand, within HMPREF1078_RS11655at 275.181 kb on - strand, within HMPREF1078_RS11655at 275.225 kb on - strand, within HMPREF1078_RS11655at 275.225 kb on - strand, within HMPREF1078_RS11655at 275.264 kb on + strand, within HMPREF1078_RS11655at 275.265 kb on - strand, within HMPREF1078_RS11655at 275.265 kb on - strand, within HMPREF1078_RS11655at 275.266 kb on + strand, within HMPREF1078_RS11655at 275.266 kb on + strand, within HMPREF1078_RS11655at 275.307 kb on + strand, within HMPREF1078_RS11655at 275.321 kb on - strand, within HMPREF1078_RS11655at 275.321 kb on - strand, within HMPREF1078_RS11655at 275.321 kb on - strand, within HMPREF1078_RS11655at 275.321 kb on - strand, within HMPREF1078_RS11655at 275.337 kb on - strand, within HMPREF1078_RS11655at 275.345 kb on - strand, within HMPREF1078_RS11655at 275.518 kb on + strand, within HMPREF1078_RS11655at 275.519 kb on - strand, within HMPREF1078_RS11655at 275.519 kb on - strand, within HMPREF1078_RS11655at 275.570 kb on - strandat 275.570 kb on - strandat 275.576 kb on + strandat 275.576 kb on + strandat 275.576 kb on + strandat 275.578 kb on + strandat 275.578 kb on + strandat 275.579 kb on - strandat 275.579 kb on - strandat 275.583 kb on + strandat 275.583 kb on + strandat 275.584 kb on - strandat 275.584 kb on - strandat 275.584 kb on - strandat 275.590 kb on + strandat 275.591 kb on - strandat 275.607 kb on - strandat 275.643 kb on + strandat 275.644 kb on - strandat 275.644 kb on - strandat 275.647 kb on + strandat 275.647 kb on + strandat 275.648 kb on - strandat 275.648 kb on - strandat 275.648 kb on - strandat 275.648 kb on - strandat 275.648 kb on - strandat 275.648 kb on - strandat 275.648 kb on - strandat 275.648 kb on - strandat 275.657 kb on + strandat 275.694 kb on + strandat 275.763 kb on + strandat 275.764 kb on - strandat 275.764 kb on - strandat 276.633 kb on - strandat 276.669 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
remove
273,530 + +0.9
273,547 - -0.0
273,571 + -0.1
273,585 + +0.4
273,586 - -1.9
273,591 + -0.0
273,594 + -0.8
273,610 + -1.2
274,451 - -0.6
274,546 + -0.7
274,547 - -0.4
274,547 - -1.9
274,676 - HMPREF1078_RS11655 0.16 -1.2
274,751 - HMPREF1078_RS11655 0.22 -2.0
274,751 - HMPREF1078_RS11655 0.22 -0.9
274,751 - HMPREF1078_RS11655 0.22 -1.6
274,778 + HMPREF1078_RS11655 0.24 -3.5
274,778 + HMPREF1078_RS11655 0.24 -1.7
274,778 + HMPREF1078_RS11655 0.24 -0.1
274,790 + HMPREF1078_RS11655 0.25 -4.1
274,791 - HMPREF1078_RS11655 0.25 -1.2
274,805 - HMPREF1078_RS11655 0.26 -0.4
274,805 - HMPREF1078_RS11655 0.26 -1.8
274,906 + HMPREF1078_RS11655 0.35 -1.4
274,907 - HMPREF1078_RS11655 0.35 -2.4
274,958 + HMPREF1078_RS11655 0.39 -1.4
274,958 + HMPREF1078_RS11655 0.39 -2.7
274,958 + HMPREF1078_RS11655 0.39 -2.8
274,966 + HMPREF1078_RS11655 0.40 -0.7
274,966 + HMPREF1078_RS11655 0.40 -2.1
274,967 - HMPREF1078_RS11655 0.40 -2.7
274,967 - HMPREF1078_RS11655 0.40 +0.5
274,990 + HMPREF1078_RS11655 0.42 -3.6
275,080 + HMPREF1078_RS11655 0.49 -2.6
275,093 + HMPREF1078_RS11655 0.51 -1.1
275,094 - HMPREF1078_RS11655 0.51 -3.1
275,101 + HMPREF1078_RS11655 0.51 -0.9
275,105 - HMPREF1078_RS11655 0.52 -3.7
275,126 - HMPREF1078_RS11655 0.53 -3.3
275,177 - HMPREF1078_RS11655 0.58 -3.3
275,177 - HMPREF1078_RS11655 0.58 -2.9
275,181 - HMPREF1078_RS11655 0.58 -3.2
275,225 - HMPREF1078_RS11655 0.62 -1.5
275,225 - HMPREF1078_RS11655 0.62 -3.5
275,264 + HMPREF1078_RS11655 0.65 -1.9
275,265 - HMPREF1078_RS11655 0.65 -1.9
275,265 - HMPREF1078_RS11655 0.65 -1.4
275,266 + HMPREF1078_RS11655 0.65 -0.7
275,266 + HMPREF1078_RS11655 0.65 -1.1
275,307 + HMPREF1078_RS11655 0.68 -2.2
275,321 - HMPREF1078_RS11655 0.70 -1.0
275,321 - HMPREF1078_RS11655 0.70 +1.2
275,321 - HMPREF1078_RS11655 0.70 -0.7
275,321 - HMPREF1078_RS11655 0.70 -2.7
275,337 - HMPREF1078_RS11655 0.71 -1.7
275,345 - HMPREF1078_RS11655 0.72 -2.8
275,518 + HMPREF1078_RS11655 0.86 -2.3
275,519 - HMPREF1078_RS11655 0.86 -1.3
275,519 - HMPREF1078_RS11655 0.86 -4.3
275,570 - +0.2
275,570 - -1.6
275,576 + -0.5
275,576 + +1.2
275,576 + -3.1
275,578 + -2.8
275,578 + -1.3
275,579 - -1.9
275,579 - -2.7
275,583 + -2.4
275,583 + -3.6
275,584 - -2.4
275,584 - -2.8
275,584 - -3.0
275,590 + -1.4
275,591 - -0.9
275,607 - -1.7
275,643 + -1.7
275,644 - -3.0
275,644 - -0.1
275,647 + -2.3
275,647 + -1.7
275,648 - -2.0
275,648 - -3.7
275,648 - +1.2
275,648 - -3.4
275,648 - -2.7
275,648 - -0.1
275,648 - -2.3
275,648 - -0.9
275,657 + -3.2
275,694 + -0.5
275,763 + -2.6
275,764 - +0.6
275,764 - -1.1
276,633 - -1.8
276,669 - -2.6

Or see this region's nucleotide sequence