Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11300 and HMPREF1078_RS11305 are separated by 116 nucleotides HMPREF1078_RS11305 and HMPREF1078_RS11310 are separated by 6 nucleotides HMPREF1078_RS11310 and HMPREF1078_RS11315 are separated by 11 nucleotides
HMPREF1078_RS11300: HMPREF1078_RS11300 - phosphoribosyltransferase family protein, at 182,001 to 182,693
_RS11300
HMPREF1078_RS11305: HMPREF1078_RS11305 - orotate phosphoribosyltransferase, at 182,810 to 183,451
_RS11305
HMPREF1078_RS11310: HMPREF1078_RS11310 - polyketide cyclase, at 183,458 to 183,868
_RS11310
HMPREF1078_RS11315: HMPREF1078_RS11315 - argininosuccinate lyase, at 183,880 to 185,217
_RS11315
Position (kb) 183
184 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 182.530 kb on + strand, within HMPREF1078_RS11300 at 182.548 kb on + strand, within HMPREF1078_RS11300 at 182.600 kb on + strand, within HMPREF1078_RS11300 at 182.604 kb on - strand, within HMPREF1078_RS11300 at 182.639 kb on + strand at 182.639 kb on + strand at 182.639 kb on + strand at 182.640 kb on - strand at 182.675 kb on - strand at 182.680 kb on + strand at 182.681 kb on - strand at 182.681 kb on - strand at 182.692 kb on - strand at 182.713 kb on + strand at 182.714 kb on - strand at 182.718 kb on + strand at 182.719 kb on - strand at 182.719 kb on - strand at 182.719 kb on - strand at 182.722 kb on + strand at 182.723 kb on - strand at 182.723 kb on - strand at 182.724 kb on + strand at 182.724 kb on + strand at 183.449 kb on + strand at 183.509 kb on - strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.517 kb on + strand, within HMPREF1078_RS11310 at 183.518 kb on - strand, within HMPREF1078_RS11310 at 183.518 kb on - strand, within HMPREF1078_RS11310 at 183.540 kb on + strand, within HMPREF1078_RS11310 at 183.540 kb on + strand, within HMPREF1078_RS11310 at 183.637 kb on - strand, within HMPREF1078_RS11310 at 183.726 kb on + strand, within HMPREF1078_RS11310 at 183.736 kb on - strand, within HMPREF1078_RS11310 at 183.762 kb on + strand, within HMPREF1078_RS11310 at 183.791 kb on - strand, within HMPREF1078_RS11310 at 183.805 kb on - strand, within HMPREF1078_RS11310 at 183.805 kb on - strand, within HMPREF1078_RS11310 at 183.864 kb on - strand at 183.864 kb on - strand at 183.866 kb on + strand at 183.867 kb on - strand at 183.867 kb on - strand at 183.930 kb on + strand at 183.936 kb on + strand at 183.936 kb on + strand at 183.937 kb on - strand at 183.937 kb on - strand at 183.937 kb on - strand at 183.967 kb on + strand at 183.967 kb on + strand at 183.967 kb on + strand at 183.967 kb on + strand at 183.979 kb on + strand at 183.979 kb on + strand at 183.979 kb on + strand at 183.979 kb on + strand at 184.035 kb on + strand, within HMPREF1078_RS11315 at 184.077 kb on + strand, within HMPREF1078_RS11315 at 184.078 kb on - strand, within HMPREF1078_RS11315 at 184.081 kb on + strand, within HMPREF1078_RS11315 at 184.082 kb on - strand, within HMPREF1078_RS11315 at 184.082 kb on - strand, within HMPREF1078_RS11315 at 184.191 kb on - strand, within HMPREF1078_RS11315 at 184.209 kb on + strand, within HMPREF1078_RS11315 at 184.318 kb on + strand, within HMPREF1078_RS11315 at 184.318 kb on + strand, within HMPREF1078_RS11315 at 184.318 kb on + strand, within HMPREF1078_RS11315 at 184.320 kb on + strand, within HMPREF1078_RS11315 at 184.344 kb on + strand, within HMPREF1078_RS11315 at 184.344 kb on + strand, within HMPREF1078_RS11315 at 184.344 kb on + strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.345 kb on - strand, within HMPREF1078_RS11315 at 184.352 kb on + strand, within HMPREF1078_RS11315 at 184.396 kb on + strand, within HMPREF1078_RS11315 at 184.396 kb on + strand, within HMPREF1078_RS11315 at 184.441 kb on + strand, within HMPREF1078_RS11315 at 184.442 kb on - strand, within HMPREF1078_RS11315 at 184.549 kb on + strand, within HMPREF1078_RS11315 at 184.549 kb on + strand, within HMPREF1078_RS11315 at 184.549 kb on + strand, within HMPREF1078_RS11315 at 184.550 kb on - strand, within HMPREF1078_RS11315 at 184.551 kb on + strand, within HMPREF1078_RS11315 at 184.593 kb on + strand, within HMPREF1078_RS11315 at 184.593 kb on + strand, within HMPREF1078_RS11315 at 184.594 kb on - strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.656 kb on + strand, within HMPREF1078_RS11315 at 184.657 kb on - strand, within HMPREF1078_RS11315 at 184.657 kb on - strand, within HMPREF1078_RS11315 at 184.657 kb on - strand, within HMPREF1078_RS11315 at 184.719 kb on + strand, within HMPREF1078_RS11315 at 184.731 kb on + strand, within HMPREF1078_RS11315 at 184.748 kb on + strand, within HMPREF1078_RS11315 at 184.749 kb on - strand, within HMPREF1078_RS11315 at 184.835 kb on - strand, within HMPREF1078_RS11315 at 184.856 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315 at 184.865 kb on + strand, within HMPREF1078_RS11315
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 182,530 + HMPREF1078_RS11300 0.76 -0.7 182,548 + HMPREF1078_RS11300 0.79 -0.2 182,600 + HMPREF1078_RS11300 0.86 +0.7 182,604 - HMPREF1078_RS11300 0.87 +0.2 182,639 + -1.0 182,639 + -0.3 182,639 + -1.6 182,640 - -0.9 182,675 - +1.2 182,680 + +1.4 182,681 - +0.6 182,681 - +3.9 182,692 - -1.2 182,713 + -2.2 182,714 - -0.8 182,718 + +0.2 182,719 - +0.4 182,719 - +1.3 182,719 - -0.9 182,722 + +2.2 182,723 - -0.3 182,723 - -0.2 182,724 + +1.5 182,724 + -0.1 183,449 + +0.2 183,509 - HMPREF1078_RS11310 0.12 -0.1 183,517 + HMPREF1078_RS11310 0.14 -2.2 183,517 + HMPREF1078_RS11310 0.14 -2.4 183,517 + HMPREF1078_RS11310 0.14 -2.5 183,517 + HMPREF1078_RS11310 0.14 -3.0 183,518 - HMPREF1078_RS11310 0.15 -1.1 183,518 - HMPREF1078_RS11310 0.15 -1.7 183,540 + HMPREF1078_RS11310 0.20 -0.5 183,540 + HMPREF1078_RS11310 0.20 -3.5 183,637 - HMPREF1078_RS11310 0.44 -1.7 183,726 + HMPREF1078_RS11310 0.65 -1.1 183,736 - HMPREF1078_RS11310 0.68 -2.1 183,762 + HMPREF1078_RS11310 0.74 -1.9 183,791 - HMPREF1078_RS11310 0.81 -0.1 183,805 - HMPREF1078_RS11310 0.84 -0.7 183,805 - HMPREF1078_RS11310 0.84 -3.8 183,864 - -2.5 183,864 - -3.7 183,866 + +0.6 183,867 - -2.0 183,867 - -0.7 183,930 + +0.2 183,936 + -1.4 183,936 + -2.1 183,937 - -0.9 183,937 - -1.2 183,937 - +1.2 183,967 + -1.4 183,967 + -3.2 183,967 + -1.1 183,967 + -1.2 183,979 + +0.2 183,979 + -2.3 183,979 + -4.2 183,979 + -3.0 184,035 + HMPREF1078_RS11315 0.12 -1.5 184,077 + HMPREF1078_RS11315 0.15 -0.2 184,078 - HMPREF1078_RS11315 0.15 -2.0 184,081 + HMPREF1078_RS11315 0.15 -0.9 184,082 - HMPREF1078_RS11315 0.15 -0.7 184,082 - HMPREF1078_RS11315 0.15 -2.2 184,191 - HMPREF1078_RS11315 0.23 -0.5 184,209 + HMPREF1078_RS11315 0.25 -2.4 184,318 + HMPREF1078_RS11315 0.33 +0.5 184,318 + HMPREF1078_RS11315 0.33 -2.1 184,318 + HMPREF1078_RS11315 0.33 -2.0 184,320 + HMPREF1078_RS11315 0.33 -1.6 184,344 + HMPREF1078_RS11315 0.35 -1.6 184,344 + HMPREF1078_RS11315 0.35 -1.4 184,344 + HMPREF1078_RS11315 0.35 -0.7 184,345 - HMPREF1078_RS11315 0.35 -1.2 184,345 - HMPREF1078_RS11315 0.35 -1.8 184,345 - HMPREF1078_RS11315 0.35 -1.2 184,345 - HMPREF1078_RS11315 0.35 -0.9 184,345 - HMPREF1078_RS11315 0.35 -3.1 184,352 + HMPREF1078_RS11315 0.35 -1.9 184,396 + HMPREF1078_RS11315 0.39 -1.6 184,396 + HMPREF1078_RS11315 0.39 -2.5 184,441 + HMPREF1078_RS11315 0.42 -2.2 184,442 - HMPREF1078_RS11315 0.42 -0.1 184,549 + HMPREF1078_RS11315 0.50 +0.9 184,549 + HMPREF1078_RS11315 0.50 -3.1 184,549 + HMPREF1078_RS11315 0.50 +0.8 184,550 - HMPREF1078_RS11315 0.50 -1.7 184,551 + HMPREF1078_RS11315 0.50 -0.2 184,593 + HMPREF1078_RS11315 0.53 -0.3 184,593 + HMPREF1078_RS11315 0.53 -3.1 184,594 - HMPREF1078_RS11315 0.53 -0.9 184,656 + HMPREF1078_RS11315 0.58 -1.9 184,656 + HMPREF1078_RS11315 0.58 +0.9 184,656 + HMPREF1078_RS11315 0.58 -1.5 184,656 + HMPREF1078_RS11315 0.58 -1.7 184,656 + HMPREF1078_RS11315 0.58 -2.2 184,656 + HMPREF1078_RS11315 0.58 -1.3 184,656 + HMPREF1078_RS11315 0.58 -1.2 184,656 + HMPREF1078_RS11315 0.58 +0.5 184,657 - HMPREF1078_RS11315 0.58 -0.2 184,657 - HMPREF1078_RS11315 0.58 -2.2 184,657 - HMPREF1078_RS11315 0.58 +0.1 184,719 + HMPREF1078_RS11315 0.63 -0.4 184,731 + HMPREF1078_RS11315 0.64 -0.0 184,748 + HMPREF1078_RS11315 0.65 -0.2 184,749 - HMPREF1078_RS11315 0.65 -0.1 184,835 - HMPREF1078_RS11315 0.71 -0.3 184,856 + HMPREF1078_RS11315 0.73 +0.2 184,865 + HMPREF1078_RS11315 0.74 -1.3 184,865 + HMPREF1078_RS11315 0.74 -1.9 184,865 + HMPREF1078_RS11315 0.74 -0.7 184,865 + HMPREF1078_RS11315 0.74 +0.2
Or see this region's nucleotide sequence